Rroxscaffold_4G00293700

OTU domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0005498
Physical Location & Seq
Forward (+)
13903203 .. 13907302
4100 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00293700.1

Sequence Viewer

Length: 1098 bp
ATGTTATACAAGAACATGGCAAGTTGGGACCTTGATCAGGATGTTGTTCGTTGGGGTTTGCATCATCTCTTGGATTGTACTCTTTCGAATGATTTTTCTCGAAGTACTGTTACTGAATATCAATGGGACTCTAGTCAAGTAGAGTGTGTAAACGAGGGTTATGTTGAGCCTTGTAGTGTGGAGAACGATGAGGTTTTAGCTCGTGCGTTGCAAGAAGAGCTATCTAGACTTGCAAAGGAAGAGGCCGTGGGAGTTTCTAGTTATGAAGATGCGCCTATGCAAGCGTCGATTCTTGCACAGGATTGGCTCGGTCCTTCAAGCAGACACAATGGTTCTGGGCTTGAAAATATTCAGGATGCAGTGAATGATTTTGGCAGGACGATGGACAACAATGATTATAGAAATCAGGAAAATGAGGGGGATGGTCCTAGGAGAAATGGAAATGGGGAAGCATATGAAAACAGTGATGGAGAGCACTTGGTGGATGGGGAAGAATTGTTGCATCCGTGGGATATAACAGATGAGTATGCTCTTGATGGTGAAGTAGGGAGAAGATTGAATCAGATGGTTCCTGTTCCTCATATTCCTAAAACGAATGAGAAAATACCCACAGTTGATGAAGAGATATCAGATCATCAGAGGCTTATTGAAAGACTGAAGTTGTATGAGTTGGTGGAGTGTAAGATCCAGGGAGATGGGAACTGTCAGTTTCGCGCTTTATCAGATCAACTATATCGTTCTTCTGAATACCATGACCTTGTAAGAGCTCAAATTATTCAACAGCTCAAGAATCAACCCGAAATATATGATGGTTACGTTCCGATGGGCTATGCTGATTACGTAAAGAAAATGAGCAAGAGTGGTGAATGGGGCGACCATGTCACGTTGCAGGCTGCTGCAGATTCGTATGGTGTCAAGATATTTGTTATCACTTCTTTCAAGGATACATGCTATATTGAGATCCTTCCACATGTTTCAAAATCTAGTAGAGTTATCTGCTTGAGCTTTTGGGCTGAGGTGCACTACAATTCTATCTATCCTGAAGGAGAACTTCCTCCGCCCAGCTTAAAGAAAAAGAAGCATTGGTGGAACTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
OTU

Protein Analysis

365

Amino Acids

41.79

Weight (kDa)

4.7

Isoelectric Point (pI)

45.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
OTU PF02338 230 - 318 1.4e-10 OTU-like cysteine protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 714
AciI CCGC 1 cut(s) 1058
AclWI GGATC 2 cut(s) 679, 955
AcuI CTGAAG 2 cut(s) 677, 1062
AdeI CACNNNGTG 1 cut(s) 481
AfaI GTAC 2 cut(s) 79, 106
AfiI CCNNNNNNNGG 1 cut(s) 37
AflIII ACRYGT 1 cut(s) 970
AgsI TTSAA 7 cut(s) 318, 344, 559, 650, 779, 940, 978
AjnI CCWGG 1 cut(s) 687
AluBI AGCT 6 cut(s) 200, 220, 767, 784, 1005, 1065
AluI AGCT 6 cut(s) 200, 220, 767, 784, 1005, 1065
Alw21I GWGCWC 3 cut(s) 477, 769, 1023
Alw44I GTGCAC 1 cut(s) 1019
AlwI GGATC 2 cut(s) 679, 955
AoxI GGCC 1 cut(s) 243
ApaLI GTGCAC 1 cut(s) 1019
ApeKI GCWGC 2 cut(s) 893, 896
Asp700I GAANNNNTTC 1 cut(s) 348
AspA2I CCTAGG 1 cut(s) 428
AspLEI GCGC 2 cut(s) 274, 716
AspS9I GGNCC 3 cut(s) 28, 311, 425
AsuHPI GGTGA 2 cut(s) 551, 875
AsuII TTCGAA 1 cut(s) 86
AvaII GGWCC 3 cut(s) 28, 311, 425
AvrII CCTAGG 1 cut(s) 428
BaeGI GKGCMC 1 cut(s) 1023
BanII GRGCYC 1 cut(s) 769
BarI GAAGNNNNNNTAC 2 cut(s) 94, 126
BauI CACGAG 1 cut(s) 201
Bbv12I GWGCWC 3 cut(s) 477, 769, 1023
BbvCI CCTCAGC 1 cut(s) 1014
BbvI GCAGC 2 cut(s) 880, 883
BccI CCATC 9 cut(s) 376, 416, 461, 479, 530, 559, 689, 803, 817
BceAI ACGGC 1 cut(s) 230
BciT130I CCWGG 1 cut(s) 689
BciVI GTATCC 1 cut(s) 937
BclI TGATCA 1 cut(s) 34
BfaI CTAG 5 cut(s) 132, 225, 258, 429, 984
BfmI CTRYAG 1 cut(s) 897
BfuI GTATCC 1 cut(s) 937
BisI GCNGC 2 cut(s) 894, 897
BlnI CCTAGG 1 cut(s) 428
BlsI GCNGC 2 cut(s) 895, 898
BmcAI AGTACT 1 cut(s) 106
Bme1390I CCNGG 1 cut(s) 689
Bme18I GGWCC 3 cut(s) 28, 311, 425
BmgT120I GGNCC 3 cut(s) 28, 311, 425
BmiI GGNNCC 2 cut(s) 29, 570
BmrFI CCNGG 1 cut(s) 689
BmsI GCATC 4 cut(s) 70, 259, 346, 511
BoxI GACNNNNGTC 1 cut(s) 132
Bpu10I CCTNAGC 1 cut(s) 1014
Bpu14I TTCGAA 1 cut(s) 86
BpuEI CTTGAG 2 cut(s) 770, 1021
BsaAI YACGTR 1 cut(s) 841
BsaJI CCNNGG 4 cut(s) 246, 428, 506, 688
Bsc4I CCNNNNNNNGG 1 cut(s) 37
BseBI CCWGG 1 cut(s) 689
BseDI CCNNGG 4 cut(s) 246, 428, 506, 688
BseGI GGATG 5 cut(s) 46, 361, 427, 490, 502
BseLI CCNNNNNNNGG 1 cut(s) 37
BseMII CTCAG 1 cut(s) 1005
BseSI GKGCMC 1 cut(s) 1023
BseXI GCAGC 2 cut(s) 880, 883
BseYI CCCAGC 1 cut(s) 1061
Bsh1236I CGCG 1 cut(s) 714
BshFI GGCC 1 cut(s) 245
BsiHKAI GWGCWC 3 cut(s) 477, 769, 1023
BslFI GGGAC 2 cut(s) 41, 140
BslI CCNNNNNNNGG 1 cut(s) 37
BsmFI GGGAC 2 cut(s) 41, 140
BsnI GGCC 1 cut(s) 245
Bsp119I TTCGAA 1 cut(s) 86
Bsp1286I GDGCHC 3 cut(s) 477, 769, 1023
Bsp143I GATC 5 cut(s) 34, 631, 684, 724, 960
BspACI CCGC 1 cut(s) 1058
BspANI GGCC 1 cut(s) 245
BspCNI CTCAG 1 cut(s) 1006
BspFNI CGCG 1 cut(s) 714
BspLI GGNNCC 2 cut(s) 29, 570
BspMAI CTGCAG 1 cut(s) 901
BspPI GGATC 2 cut(s) 679, 955
BspQI GCTCTTC 1 cut(s) 210
BspT104I TTCGAA 1 cut(s) 86
BssECI CCNNGG 4 cut(s) 246, 428, 506, 688
BssMI GATC 5 cut(s) 34, 631, 684, 724, 960
BssSI CACGAG 1 cut(s) 201
BssT1I CCWWGG 1 cut(s) 428
Bst2BI CACGAG 1 cut(s) 201
Bst2UI CCWGG 1 cut(s) 689
Bst4CI ACNGT 4 cut(s) 109, 464, 613, 704
Bst6I CTCTTC 3 cut(s) 210, 234, 615
BstBAI YACGTR 1 cut(s) 841
BstBI TTCGAA 1 cut(s) 86
BstC8I GCNNGC 2 cut(s) 282, 891
BstDEI CTNAG 1 cut(s) 1014
BstDSI CCRYGG 2 cut(s) 246, 506
BstENI CCTNNNNNAGG 1 cut(s) 35
BstF5I GGATG 5 cut(s) 46, 361, 427, 490, 502
BstFNI CGCG 1 cut(s) 714
BstHHI GCGC 2 cut(s) 274, 716
BstKTI GATC 5 cut(s) 37, 634, 687, 727, 963
BstMBI GATC 5 cut(s) 34, 631, 684, 724, 960
BstMWI GCNNNNNNNGC 1 cut(s) 217
BstNI CCWGG 1 cut(s) 689
BstNSI RCATGY 2 cut(s) 951, 974
BstPAI GACNNNNGTC 1 cut(s) 132
BstSCI CCNGG 1 cut(s) 687
BstSFI CTRYAG 1 cut(s) 897
BstSLI GKGCMC 1 cut(s) 1023
BstSNI TACGTA 1 cut(s) 841
BstUI CGCG 1 cut(s) 714
BstV1I GCAGC 2 cut(s) 880, 883
BstX2I RGATCY 2 cut(s) 684, 960
BstXI CCANNNNNNTGG 1 cut(s) 695
BstYI RGATCY 2 cut(s) 684, 960
BsuI GTATCC 1 cut(s) 937
BsuRI GGCC 1 cut(s) 245
BtgI CCRYGG 2 cut(s) 246, 506
BtsCI GGATG 5 cut(s) 46, 361, 427, 490, 502
BtsI GCAGTG 1 cut(s) 366
BtsIMutI CAGTG 2 cut(s) 366, 469
Cac8I GCNNGC 2 cut(s) 282, 891
CfoI GCGC 2 cut(s) 274, 716
Cfr13I GGNCC 3 cut(s) 28, 311, 425
CseI GACGC 1 cut(s) 273
Csp6I GTAC 2 cut(s) 78, 105
CviAII CATG 5 cut(s) 16, 752, 878, 948, 971
CviQI GTAC 2 cut(s) 78, 105
DdeI CTNAG 1 cut(s) 1014
DpnI GATC 5 cut(s) 36, 633, 686, 726, 962
DpnII GATC 5 cut(s) 34, 631, 684, 724, 960
DraIII CACNNNGTG 1 cut(s) 481
Eam1104I CTCTTC 3 cut(s) 210, 234, 615
EarI CTCTTC 3 cut(s) 210, 234, 615
EciI GGCGGA 1 cut(s) 1047
Ecl136II GAGCTC 1 cut(s) 767
Eco105I TACGTA 1 cut(s) 841
Eco130I CCWWGG 1 cut(s) 428
Eco24I GRGCYC 1 cut(s) 769
Eco32I GATATC 1 cut(s) 627
Eco47I GGWCC 3 cut(s) 28, 311, 425
Eco53kI GAGCTC 1 cut(s) 767
Eco57I CTGAAG 2 cut(s) 677, 1062
EcoICRI GAGCTC 1 cut(s) 767
EcoNI CCTNNNNNAGG 1 cut(s) 35
EcoO109I RGGNCCY 1 cut(s) 28
EcoRII CCWGG 1 cut(s) 687
EcoRV GATATC 1 cut(s) 627
EcoT14I CCWWGG 1 cut(s) 428
EcoT38I GRGCYC 1 cut(s) 769
ErhI CCWWGG 1 cut(s) 428
FaeI CATG 5 cut(s) 19, 755, 881, 951, 974
FalI AAGNNNNNCTT 2 cut(s) 1035, 1067
FaqI GGGAC 2 cut(s) 41, 140
FatI CATG 5 cut(s) 15, 751, 877, 947, 970
FauNDI CATATG 1 cut(s) 454
FbaI TGATCA 1 cut(s) 34
Fnu4HI GCNGC 2 cut(s) 894, 897
FokI GGATG 5 cut(s) 53, 368, 434, 489, 497
FriOI GRGCYC 1 cut(s) 769
Fsp4HI GCNGC 2 cut(s) 894, 897
FspBI CTAG 5 cut(s) 132, 225, 258, 429, 984
GlaI GCGC 2 cut(s) 273, 715
GluI GCNGC 2 cut(s) 894, 897
GsaI CCCAGC 1 cut(s) 1065
HaeIII GGCC 1 cut(s) 245
HgaI GACGC 1 cut(s) 273
HhaI GCGC 2 cut(s) 274, 716
Hin1II CATG 5 cut(s) 19, 755, 881, 951, 974
Hin6I GCGC 2 cut(s) 272, 714
HinP1I GCGC 2 cut(s) 272, 714
HinfI GANTC 5 cut(s) 128, 289, 559, 790, 902
HphI GGTGA 2 cut(s) 551, 875
Hpy166II GTNNAC 2 cut(s) 151, 1021
Hpy188I TCNGA 6 cut(s) 564, 631, 639, 724, 745, 822
Hpy188III TCNNGA 9 cut(s) 38, 99, 225, 353, 407, 533, 787, 916, 1040
Hpy8I GTNNAC 2 cut(s) 151, 1021
Hpy99I CGWCG 1 cut(s) 289
HpyAV CCTTC 3 cut(s) 324, 974, 1037
HpyCH4III ACNGT 4 cut(s) 109, 464, 613, 704
HpyCH4IV ACGT 3 cut(s) 816, 840, 884
HpyF10VI GCNNNNNNNGC 1 cut(s) 217
HpyF3I CTNAG 1 cut(s) 1014
HpySE526I ACGT 3 cut(s) 816, 840, 884
Hsp92II CATG 5 cut(s) 19, 755, 881, 951, 974
HspAI GCGC 2 cut(s) 272, 714
Ksp22I TGATCA 1 cut(s) 34
Kzo9I GATC 5 cut(s) 34, 631, 684, 724, 960
LguI GCTCTTC 1 cut(s) 210
Lsp1109I GCAGC 2 cut(s) 880, 883
LweI GCATC 4 cut(s) 70, 259, 346, 511
MaeI CTAG 5 cut(s) 132, 225, 258, 429, 984
MaeII ACGT 3 cut(s) 816, 840, 884
MaeIII GTNAC 3 cut(s) 109, 812, 880
MalI GATC 5 cut(s) 36, 633, 686, 726, 962
MboI GATC 5 cut(s) 34, 631, 684, 724, 960
MboII GAAGA 7 cut(s) 227, 251, 278, 503, 564, 632, 732
MflI RGATCY 2 cut(s) 684, 960
MhlI GDGCHC 3 cut(s) 477, 769, 1023
MluCI AATT 3 cut(s) 494, 771, 1027
MlyI GAGTC 1 cut(s) 122
MnlI CCTC 8 cut(s) 148, 184, 235, 409, 588, 633, 1009, 1065
MroXI GAANNNNTTC 1 cut(s) 348
MseI TTAA 1 cut(s) 1067
MspR9I CCNGG 1 cut(s) 689
MvaI CCWGG 1 cut(s) 689
MvnI CGCG 1 cut(s) 714
MwoI GCNNNNNNNGC 1 cut(s) 217
NdeI CATATG 1 cut(s) 454
NdeII GATC 5 cut(s) 34, 631, 684, 724, 960
NlaIII CATG 5 cut(s) 19, 755, 881, 951, 974
NlaIV GGNNCC 2 cut(s) 29, 570
NmuCI GTSAC 1 cut(s) 880
NspI RCATGY 2 cut(s) 951, 974
NspV TTCGAA 1 cut(s) 86
PciI ACATGT 1 cut(s) 970
PciSI GCTCTTC 1 cut(s) 210
PdmI GAANNNNTTC 1 cut(s) 348
PfeI GAWTC 4 cut(s) 289, 559, 790, 902
PflFI GACNNNGTC 1 cut(s) 878
PkrI GCNGC 2 cut(s) 895, 898
PleI GAGTC 1 cut(s) 122
PpsI GAGTC 1 cut(s) 122
Ppu21I YACGTR 1 cut(s) 841
PpuMI RGGWCCY 1 cut(s) 28
PscI ACATGT 1 cut(s) 970
PshAI GACNNNNGTC 1 cut(s) 132
Psp124BI GAGCTC 1 cut(s) 769
Psp5II RGGWCCY 1 cut(s) 28
Psp6I CCWGG 1 cut(s) 687
PspFI CCCAGC 1 cut(s) 1061
PspGI CCWGG 1 cut(s) 687
PspN4I GGNNCC 2 cut(s) 29, 570
PspPI GGNCC 3 cut(s) 28, 311, 425
PspPPI RGGWCCY 1 cut(s) 28
PstI CTGCAG 1 cut(s) 901
PsuI RGATCY 2 cut(s) 684, 960
PsyI GACNNNGTC 1 cut(s) 878
RsaI GTAC 2 cut(s) 79, 106
RsaNI GTAC 2 cut(s) 78, 105
SacI GAGCTC 1 cut(s) 769
SapI GCTCTTC 1 cut(s) 210
SaqAI TTAA 1 cut(s) 1067
SatI GCNGC 2 cut(s) 894, 897
Sau3AI GATC 5 cut(s) 34, 631, 684, 724, 960
Sau96I GGNCC 3 cut(s) 28, 311, 425
ScaI AGTACT 1 cut(s) 106
SchI GAGTC 1 cut(s) 122
ScrFI CCNGG 1 cut(s) 689
SduI GDGCHC 3 cut(s) 477, 769, 1023
SfaNI GCATC 4 cut(s) 70, 259, 346, 511
SfcI CTRYAG 1 cut(s) 897
SfuI TTCGAA 1 cut(s) 86
SinI GGWCC 3 cut(s) 28, 311, 425
SmlI CTYRAG 2 cut(s) 785, 1000
SmoI CTYRAG 2 cut(s) 785, 1000
SnaBI TACGTA 1 cut(s) 841
Sse9I AATT 3 cut(s) 494, 771, 1027
SsiI CCGC 1 cut(s) 1058
SspI AATATT 1 cut(s) 349
SspMI CTAG 5 cut(s) 132, 225, 258, 429, 984
SstI GAGCTC 1 cut(s) 769
StyD4I CCNGG 1 cut(s) 687
StyI CCWWGG 1 cut(s) 428
TaaI ACNGT 4 cut(s) 109, 464, 613, 704
TaiI ACGT 3 cut(s) 819, 843, 887
TaqI TCGA 3 cut(s) 86, 100, 287
TaqII GACCGA 1 cut(s) 299
TasI AATT 3 cut(s) 494, 771, 1027
TatI WGTACW 2 cut(s) 77, 104
TfiI GAWTC 4 cut(s) 289, 559, 790, 902
Tru1I TTAA 1 cut(s) 1067
Tru9I TTAA 1 cut(s) 1067
TscAI CASTG 2 cut(s) 366, 469
TseFI GTSAC 1 cut(s) 880
TseI GCWGC 2 cut(s) 893, 896
Tsp45I GTSAC 1 cut(s) 880
TspDTI ATGAA 3 cut(s) 279, 471, 633
TspGWI ACGGA 1 cut(s) 495
TspRI CASTG 2 cut(s) 366, 469
Tth111I GACNNNGTC 1 cut(s) 878
VneI GTGCAC 1 cut(s) 1019
VpaK11BI GGWCC 3 cut(s) 28, 311, 425
XagI CCTNNNNNAGG 1 cut(s) 35
XbaI TCTAGA 1 cut(s) 224
XceI RCATGY 2 cut(s) 951, 974
XmaJI CCTAGG 1 cut(s) 428
XmnI GAANNNNTTC 1 cut(s) 348
XspI CTAG 5 cut(s) 132, 225, 258, 429, 984
ZrmI AGTACT 1 cut(s) 106
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.