Rh1BG274000

OTU domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0005498
Physical Location & Seq
Reverse (-)
41048617 .. 41053561
4945 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG274000.1

Sequence Viewer

Length: 1233 bp
ATGTTATACAAGAACATGGCAAATTGGAACCTTGATCAGGATGTTGTTCGTTGGGGTTTGCATCATCTCTTGGATTGTACTCTTTCGAATGATTTTTCTCGAAGTACTGTTACTGAATATCAATGGGACTCTAGTCAAGTAGAGTGTGTAAACGAAGGTTATGTTGAGCCTTGTAGTGTGGAGAACGATGAGGTTTTAGCTCGTGCGTTGCAAGAAGAGCTATCTAGACTTGCAAAGGAAGAGGCCGCGGGAGTTTCTAGTTATGGAGATGCGCCTGTGCAAGCGTCGATTCTTGCACAGGATTGGCTCGGTCCCTCAAGCAGACACAATGGTTCTGGGCTTGAAAATGTTCAGGATGCAGTGAATGATTTTGGCAGGATGATGGACAACGATGATTATAGAAATCAGGAAAATGAGGGGGATGGTCCTAGGAGAAATGGAAACGGGGAACCATATGAAAACAGTGATGGAGAGCACTCGGTGGATGGGGAAGACTTGTTGCATCCGTGGGATATAACAGATGAGTATGCTCTTGATGGTGAAGTAGGGAGAAGATTGAATCAGATGGTTCCTGTTCCTCATATTCCTAAAACAAATGAGAAAATACCCACAGTTGATGAAGAGATATCAGATCATCAGAGGCTTATTGAAAGACTGAAGTTGTATGAGTTGGTGGAGTGTAAGATCCCGGGAGATGGGAACTGTCAGTTTCGCGCTTTATCAGATCAACTATATCGTTCTTCTGAATACCATGGCCATGTAAGAGATCAAATTATTCAACAGCTCAAGAATCACCCCGAAATATATGATGGTTACGTTCCGATGGGTTATGTTGATTACATAAAGAAAATGAGCAAGAGTGGTGAATGGGGCGACCATGTCACGTTGCAGGCTGCTGCAGATTCGTATGGTGTCAAGATATTTGTTATCACTTCTTTCAAGGATACATGCTATATTGAGATCCTTCCACATGTTTCAAAATCTAGTAGAGAAACTTTCATAGCCACTCACAACGACCAGCTTCAGAGAGTAATTGAGAACTTGAAGAAACAACACCCTAATGTGACTATCGATCGTTATGCAGATTATTACAGTGCATGCATGTTCTTCCCCAAGGCACTTAGTCTAGGGTGTGAACCTGGGAACAACCCGTGCTGTTTCGCCATACACAAAAATCTTCCCGGAAAGCCACTTACTGTGCGAGACGAATCAACTGGGATGGTAGCCATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
OTU

Protein Analysis

410

Amino Acids

46.45

Weight (kDa)

4.82

Isoelectric Point (pI)

43.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
OTU PF02338 230 - 316 3e-11 OTU-like cysteine protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 248, 714
AciI CCGC 2 cut(s) 246, 248
AclWI GGATC 2 cut(s) 679, 955
AcoI YGGCCR 1 cut(s) 754
AcuI CTGAAG 2 cut(s) 677, 1007
AdeI CACNNNGTG 1 cut(s) 481
AfaI GTAC 2 cut(s) 79, 106
AfiI CCNNNNNNNGG 2 cut(s) 37, 695
AflIII ACRYGT 1 cut(s) 970
AgsI TTSAA 7 cut(s) 344, 559, 650, 779, 940, 978, 1045
AjnI CCWGG 1 cut(s) 1138
AluBI AGCT 4 cut(s) 200, 220, 784, 1021
AluI AGCT 4 cut(s) 200, 220, 784, 1021
Alw21I GWGCWC 1 cut(s) 477
Alw26I GTCTC 1 cut(s) 1197
AlwI GGATC 2 cut(s) 679, 955
Ama87I CYCGRG 1 cut(s) 688
AoxI GGCC 2 cut(s) 243, 754
ApeKI GCWGC 2 cut(s) 893, 896
Asp700I GAANNNNTTC 1 cut(s) 348
AspA2I CCTAGG 1 cut(s) 428
AspLEI GCGC 2 cut(s) 274, 716
AspS9I GGNCC 2 cut(s) 311, 425
AsuC2I CCSGG 3 cut(s) 689, 690, 1182
AsuHPI GGTGA 3 cut(s) 551, 785, 875
AsuII TTCGAA 1 cut(s) 86
AvaI CYCGRG 1 cut(s) 688
AvaII GGWCC 2 cut(s) 311, 425
AvrII CCTAGG 1 cut(s) 428
BalI TGGCCA 1 cut(s) 756
BarI GAAGNNNNNNTAC 2 cut(s) 94, 126
BauI CACGAG 1 cut(s) 201
BbsI GAAGAC 1 cut(s) 498
Bbv12I GWGCWC 1 cut(s) 477
BbvI GCAGC 2 cut(s) 880, 883
BcgI CGANNNNNNTGC 2 cut(s) 1061, 1095
BciT130I CCWGG 1 cut(s) 1140
BciVI GTATCC 1 cut(s) 937
BclI TGATCA 1 cut(s) 34
BcnI CCSGG 3 cut(s) 689, 690, 1182
BcoDI GTCTC 1 cut(s) 1197
BfaI CTAG 6 cut(s) 132, 225, 258, 429, 984, 1127
BfmI CTRYAG 1 cut(s) 897
BfuI GTATCC 1 cut(s) 937
BisI GCNGC 3 cut(s) 246, 894, 897
BlnI CCTAGG 1 cut(s) 428
BlsI GCNGC 3 cut(s) 247, 895, 898
BmcAI AGTACT 1 cut(s) 106
Bme1390I CCNGG 4 cut(s) 689, 690, 1140, 1182
Bme18I GGWCC 2 cut(s) 311, 425
BmeT110I CYCGRG 1 cut(s) 688
BmgT120I GGNCC 2 cut(s) 311, 425
BmiI GGNNCC 4 cut(s) 29, 313, 450, 570
BmrFI CCNGG 4 cut(s) 689, 690, 1140, 1182
BmrI ACTGGG 1 cut(s) 1224
BmsI GCATC 4 cut(s) 70, 259, 346, 511
BmuI ACTGGG 1 cut(s) 1224
BoxI GACNNNNGTC 1 cut(s) 132
BpiI GAAGAC 1 cut(s) 498
Bpu14I TTCGAA 1 cut(s) 86
BpuEI CTTGAG 2 cut(s) 301, 770
BpuMI CCSGG 3 cut(s) 689, 690, 1182
Bsa29I ATCGAT 1 cut(s) 1071
BsaJI CCNNGG 7 cut(s) 246, 428, 506, 688, 751, 1113, 1139
Bsc4I CCNNNNNNNGG 2 cut(s) 37, 695
Bse1I ACTGG 1 cut(s) 1219
BseBI CCWGG 1 cut(s) 1140
BseCI ATCGAT 1 cut(s) 1071
BseDI CCNNGG 7 cut(s) 246, 428, 506, 688, 751, 1113, 1139
BseGI GGATG 7 cut(s) 46, 361, 384, 427, 490, 502, 1224
BseLI CCNNNNNNNGG 2 cut(s) 37, 695
BseNI ACTGG 1 cut(s) 1219
BseXI GCAGC 2 cut(s) 880, 883
Bsh1236I CGCG 2 cut(s) 248, 714
Bsh1285I CGRYCG 1 cut(s) 1075
BshFI GGCC 2 cut(s) 245, 756
BshVI ATCGAT 1 cut(s) 1071
BsiEI CGRYCG 1 cut(s) 1075
BsiHKAI GWGCWC 1 cut(s) 477
BsiHKCI CYCGRG 1 cut(s) 688
BsiSI CCGG 2 cut(s) 689, 1182
BslFI GGGAC 2 cut(s) 140, 297
BslI CCNNNNNNNGG 2 cut(s) 37, 695
BsmAI GTCTC 1 cut(s) 1197
BsmBI CGTCTC 1 cut(s) 1197
BsmFI GGGAC 2 cut(s) 140, 297
BsnI GGCC 2 cut(s) 245, 756
BsoBI CYCGRG 1 cut(s) 688
Bsp119I TTCGAA 1 cut(s) 86
Bsp1286I GDGCHC 1 cut(s) 477
Bsp143I GATC 7 cut(s) 34, 631, 684, 724, 766, 960, 1072
Bsp19I CCATGG 1 cut(s) 751
BspACI CCGC 2 cut(s) 246, 248
BspANI GGCC 2 cut(s) 245, 756
BspDI ATCGAT 1 cut(s) 1071
BspFNI CGCG 2 cut(s) 248, 714
BspLI GGNNCC 4 cut(s) 29, 313, 450, 570
BspMAI CTGCAG 1 cut(s) 901
BspPI GGATC 2 cut(s) 679, 955
BspQI GCTCTTC 1 cut(s) 210
BspT104I TTCGAA 1 cut(s) 86
BsrI ACTGG 1 cut(s) 1219
BssECI CCNNGG 7 cut(s) 246, 428, 506, 688, 751, 1113, 1139
BssMI GATC 7 cut(s) 34, 631, 684, 724, 766, 960, 1072
BssSI CACGAG 1 cut(s) 201
BssT1I CCWWGG 3 cut(s) 428, 751, 1113
Bst2BI CACGAG 1 cut(s) 201
Bst2UI CCWGG 1 cut(s) 1140
Bst4CI ACNGT 6 cut(s) 109, 464, 613, 704, 1094, 1198
Bst6I CTCTTC 3 cut(s) 210, 234, 615
BstBI TTCGAA 1 cut(s) 86
BstC8I GCNNGC 3 cut(s) 282, 891, 1099
BstDEI CTNAG 1 cut(s) 1121
BstDSI CCRYGG 3 cut(s) 246, 506, 751
BstENI CCTNNNNNAGG 1 cut(s) 35
BstF5I GGATG 7 cut(s) 46, 361, 384, 427, 490, 502, 1224
BstFNI CGCG 2 cut(s) 248, 714
BstHHI GCGC 2 cut(s) 274, 716
BstKTI GATC 7 cut(s) 37, 634, 687, 727, 769, 963, 1075
BstMAI GTCTC 1 cut(s) 1197
BstMBI GATC 7 cut(s) 34, 631, 684, 724, 766, 960, 1072
BstMCI CGRYCG 1 cut(s) 1075
BstMWI GCNNNNNNNGC 1 cut(s) 217
BstNI CCWGG 1 cut(s) 1140
BstNSI RCATGY 4 cut(s) 951, 974, 1101, 1105
BstPAI GACNNNNGTC 1 cut(s) 132
BstSCI CCNGG 4 cut(s) 687, 688, 1138, 1180
BstSFI CTRYAG 1 cut(s) 897
BstUI CGCG 2 cut(s) 248, 714
BstV1I GCAGC 2 cut(s) 880, 883
BstV2I GAAGAC 1 cut(s) 498
BstX2I RGATCY 2 cut(s) 684, 960
BstYI RGATCY 2 cut(s) 684, 960
Bsu15I ATCGAT 1 cut(s) 1071
BsuI GTATCC 1 cut(s) 937
BsuRI GGCC 2 cut(s) 245, 756
BsuTUI ATCGAT 1 cut(s) 1071
BtgI CCRYGG 3 cut(s) 246, 506, 751
BtsCI GGATG 7 cut(s) 46, 361, 384, 427, 490, 502, 1224
BtsI GCAGTG 1 cut(s) 366
BtsIMutI CAGTG 3 cut(s) 366, 469, 1099
Cac8I GCNNGC 3 cut(s) 282, 891, 1099
CfoI GCGC 2 cut(s) 274, 716
Cfr13I GGNCC 2 cut(s) 311, 425
Cfr42I CCGCGG 1 cut(s) 249
Cfr9I CCCGGG 1 cut(s) 688
ClaI ATCGAT 1 cut(s) 1071
CseI GACGC 1 cut(s) 273
Csp6I GTAC 2 cut(s) 78, 105
CviAII CATG 8 cut(s) 16, 752, 758, 878, 948, 971, 1098, 1102
CviQI GTAC 2 cut(s) 78, 105
DdeI CTNAG 1 cut(s) 1121
DpnI GATC 7 cut(s) 36, 633, 686, 726, 768, 962, 1074
DpnII GATC 7 cut(s) 34, 631, 684, 724, 766, 960, 1072
DraIII CACNNNGTG 1 cut(s) 481
EaeI YGGCCR 1 cut(s) 754
Eam1104I CTCTTC 3 cut(s) 210, 234, 615
EarI CTCTTC 3 cut(s) 210, 234, 615
Eco130I CCWWGG 3 cut(s) 428, 751, 1113
Eco32I GATATC 1 cut(s) 627
Eco47I GGWCC 2 cut(s) 311, 425
Eco57I CTGAAG 2 cut(s) 677, 1007
Eco88I CYCGRG 1 cut(s) 688
EcoNI CCTNNNNNAGG 1 cut(s) 35
EcoRII CCWGG 1 cut(s) 1138
EcoRV GATATC 1 cut(s) 627
EcoT14I CCWWGG 3 cut(s) 428, 751, 1113
EcoT22I ATGCAT 1 cut(s) 1103
ErhI CCWWGG 3 cut(s) 428, 751, 1113
Esp3I CGTCTC 1 cut(s) 1197
FaeI CATG 8 cut(s) 19, 755, 761, 881, 951, 974, 1101, 1105
FaqI GGGAC 2 cut(s) 140, 297
FatI CATG 8 cut(s) 15, 751, 757, 877, 947, 970, 1097, 1101
FauI CCCGC 1 cut(s) 241
FauNDI CATATG 2 cut(s) 454, 1229
FbaI TGATCA 1 cut(s) 34
Fnu4HI GCNGC 3 cut(s) 246, 894, 897
FokI GGATG 6 cut(s) 53, 368, 391, 434, 489, 497
Fsp4HI GCNGC 3 cut(s) 246, 894, 897
FspBI CTAG 6 cut(s) 132, 225, 258, 429, 984, 1127
GlaI GCGC 2 cut(s) 273, 715
GluI GCNGC 3 cut(s) 246, 894, 897
HaeIII GGCC 2 cut(s) 245, 756
HapII CCGG 2 cut(s) 689, 1182
HgaI GACGC 1 cut(s) 273
HhaI GCGC 2 cut(s) 274, 716
Hin1II CATG 8 cut(s) 19, 755, 761, 881, 951, 974, 1101, 1105
Hin6I GCGC 2 cut(s) 272, 714
HinP1I GCGC 2 cut(s) 272, 714
HinfI GANTC 6 cut(s) 128, 289, 559, 790, 902, 1208
HpaII CCGG 2 cut(s) 689, 1182
HphI GGTGA 3 cut(s) 551, 785, 875
Hpy166II GTNNAC 2 cut(s) 151, 1136
Hpy188I TCNGA 7 cut(s) 564, 631, 639, 724, 745, 822, 1026
Hpy188III TCNNGA 8 cut(s) 38, 99, 225, 353, 407, 533, 787, 916
Hpy8I GTNNAC 2 cut(s) 151, 1136
Hpy99I CGWCG 1 cut(s) 289
HpyAV CCTTC 2 cut(s) 149, 974
HpyCH4III ACNGT 6 cut(s) 109, 464, 613, 704, 1094, 1198
HpyCH4IV ACGT 2 cut(s) 816, 884
HpyF10VI GCNNNNNNNGC 1 cut(s) 217
HpyF3I CTNAG 1 cut(s) 1121
HpySE526I ACGT 2 cut(s) 816, 884
Hsp92II CATG 8 cut(s) 19, 755, 761, 881, 951, 974, 1101, 1105
HspAI GCGC 2 cut(s) 272, 714
Ksp22I TGATCA 1 cut(s) 34
KspI CCGCGG 1 cut(s) 249
Kzo9I GATC 7 cut(s) 34, 631, 684, 724, 766, 960, 1072
LguI GCTCTTC 1 cut(s) 210
Lsp1109I GCAGC 2 cut(s) 880, 883
LweI GCATC 4 cut(s) 70, 259, 346, 511
MaeI CTAG 6 cut(s) 132, 225, 258, 429, 984, 1127
MaeII ACGT 2 cut(s) 816, 884
MaeIII GTNAC 4 cut(s) 109, 812, 880, 1063
MalI GATC 7 cut(s) 36, 633, 686, 726, 768, 962, 1074
MboI GATC 7 cut(s) 34, 631, 684, 724, 766, 960, 1072
MboII GAAGA 9 cut(s) 227, 251, 503, 564, 632, 732, 1057, 1099, 1169
MflI RGATCY 2 cut(s) 684, 960
MhlI GDGCHC 1 cut(s) 477
MlsI TGGCCA 1 cut(s) 756
MluCI AATT 3 cut(s) 22, 771, 1032
MluNI TGGCCA 1 cut(s) 756
MlyI GAGTC 1 cut(s) 122
MnlI CCTC 6 cut(s) 184, 235, 325, 409, 588, 633
Mox20I TGGCCA 1 cut(s) 756
Mph1103I ATGCAT 1 cut(s) 1103
MroXI GAANNNNTTC 1 cut(s) 348
MscI TGGCCA 1 cut(s) 756
MslI CAYNNNNRTG 2 cut(s) 756, 1059
Msp20I TGGCCA 1 cut(s) 756
MspA1I CMGCKG 1 cut(s) 248
MspI CCGG 2 cut(s) 689, 1182
MspR9I CCNGG 4 cut(s) 689, 690, 1140, 1182
MvaI CCWGG 1 cut(s) 1140
MvnI CGCG 2 cut(s) 248, 714
MwoI GCNNNNNNNGC 1 cut(s) 217
NciI CCSGG 3 cut(s) 689, 690, 1182
NcoI CCATGG 1 cut(s) 751
NdeI CATATG 2 cut(s) 454, 1229
NdeII GATC 7 cut(s) 34, 631, 684, 724, 766, 960, 1072
NlaIII CATG 8 cut(s) 19, 755, 761, 881, 951, 974, 1101, 1105
NlaIV GGNNCC 4 cut(s) 29, 313, 450, 570
NmuCI GTSAC 2 cut(s) 880, 1063
NsiI ATGCAT 1 cut(s) 1103
NspI RCATGY 4 cut(s) 951, 974, 1101, 1105
NspV TTCGAA 1 cut(s) 86
PaeI GCATGC 1 cut(s) 1101
PciI ACATGT 1 cut(s) 970
PciSI GCTCTTC 1 cut(s) 210
PdmI GAANNNNTTC 1 cut(s) 348
PfeI GAWTC 5 cut(s) 289, 559, 790, 902, 1208
PflFI GACNNNGTC 1 cut(s) 878
PfoI TCCNGGA 1 cut(s) 1180
PkrI GCNGC 3 cut(s) 247, 895, 898
Ple19I CGATCG 1 cut(s) 1075
PleI GAGTC 1 cut(s) 122
PpsI GAGTC 1 cut(s) 122
PscI ACATGT 1 cut(s) 970
PshAI GACNNNNGTC 1 cut(s) 132
Psp6I CCWGG 1 cut(s) 1138
PspGI CCWGG 1 cut(s) 1138
PspN4I GGNNCC 4 cut(s) 29, 313, 450, 570
PspPI GGNCC 2 cut(s) 311, 425
PstI CTGCAG 1 cut(s) 901
PsuI RGATCY 2 cut(s) 684, 960
PsyI GACNNNGTC 1 cut(s) 878
PvuI CGATCG 1 cut(s) 1075
RsaI GTAC 2 cut(s) 79, 106
RsaNI GTAC 2 cut(s) 78, 105
RseI CAYNNNNRTG 2 cut(s) 756, 1059
SacII CCGCGG 1 cut(s) 249
SapI GCTCTTC 1 cut(s) 210
SatI GCNGC 3 cut(s) 246, 894, 897
Sau3AI GATC 7 cut(s) 34, 631, 684, 724, 766, 960, 1072
Sau96I GGNCC 2 cut(s) 311, 425
ScaI AGTACT 1 cut(s) 106
SchI GAGTC 1 cut(s) 122
ScrFI CCNGG 4 cut(s) 689, 690, 1140, 1182
SduI GDGCHC 1 cut(s) 477
SfaNI GCATC 4 cut(s) 70, 259, 346, 511
SfcI CTRYAG 1 cut(s) 897
Sfr303I CCGCGG 1 cut(s) 249
SfuI TTCGAA 1 cut(s) 86
SgrBI CCGCGG 1 cut(s) 249
SinI GGWCC 2 cut(s) 311, 425
SmaI CCCGGG 1 cut(s) 690
SmiMI CAYNNNNRTG 2 cut(s) 756, 1059
SmlI CTYRAG 2 cut(s) 316, 785
SmoI CTYRAG 2 cut(s) 316, 785
SphI GCATGC 1 cut(s) 1101
Sse9I AATT 3 cut(s) 22, 771, 1032
SsiI CCGC 2 cut(s) 246, 248
SspMI CTAG 6 cut(s) 132, 225, 258, 429, 984, 1127
StyD4I CCNGG 4 cut(s) 687, 688, 1138, 1180
StyI CCWWGG 3 cut(s) 428, 751, 1113
TaaI ACNGT 6 cut(s) 109, 464, 613, 704, 1094, 1198
TaiI ACGT 2 cut(s) 819, 887
TaqI TCGA 4 cut(s) 86, 100, 287, 1071
TaqII GACCGA 1 cut(s) 299
TasI AATT 3 cut(s) 22, 771, 1032
TatI WGTACW 2 cut(s) 77, 104
TauI GCSGC 1 cut(s) 248
TfiI GAWTC 5 cut(s) 289, 559, 790, 902, 1208
TscAI CASTG 3 cut(s) 366, 469, 1099
TseFI GTSAC 2 cut(s) 880, 1063
TseI GCWGC 2 cut(s) 893, 896
Tsp45I GTSAC 2 cut(s) 880, 1063
TspDTI ATGAA 3 cut(s) 471, 633, 988
TspGWI ACGGA 1 cut(s) 495
TspMI CCCGGG 1 cut(s) 688
TspRI CASTG 3 cut(s) 366, 469, 1099
Tth111I GACNNNGTC 1 cut(s) 878
VpaK11BI GGWCC 2 cut(s) 311, 425
XagI CCTNNNNNAGG 1 cut(s) 35
XbaI TCTAGA 1 cut(s) 224
XceI RCATGY 4 cut(s) 951, 974, 1101, 1105
XmaI CCCGGG 1 cut(s) 688
XmaJI CCTAGG 1 cut(s) 428
XmnI GAANNNNTTC 1 cut(s) 348
XspI CTAG 6 cut(s) 132, 225, 258, 429, 984, 1127
ZrmI AGTACT 1 cut(s) 106
Zsp2I ATGCAT 1 cut(s) 1103
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.