Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0005498

Physical Location & Seq

Genomic Coordinates Reverse (-)

13721902 .. 13724725

Gene Structure 2824 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g13160.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGTTAAACGAGCAGATGAAGACATATAACCTTGATCCCGACGTGCTTCGCTGGGGTCTCCATCTCTTGGATGTTTGCACATTGTCGAATGATAATTCTCATAGTACTGTTACGCAATACGACCAGGATTTTAGTCAAGTAGAGTATGTTAGAGAAGGTTATGTTGAGCCTTGTATTGTGGAGAATGATGAGATTATAGCTTATGCTTATCAAGAAGAGTTGTCGAGGCTCGCTTCTGTAGAAACGTCAGGAGCTACTGGTTATGGAGAAGGGCAGTTGGAAGCGTCAATCATTGCGCAGGATTGGCTTGGTCCATCAAATAGGCACAGTGGTACTGGGCTTGAAAATGTTCAGGATGCAGTAAATGATTTCGGCACAAATATGGACACCGATGATTATAGACATAATCAACATGGGGTGGATGATCCAAGGAGAAATGGAAACGAGGTAGCAAGTGATCACTGCGAAGGAGAATGCTCAATTAATGGGGAAGACTTTTTGCATTCACTGGAAATAACAGATGAATTTTCTCTTGATGGTGAAGTAGGGAGAAGATTGAATCAGATGGCTTCTGTACCTCATGTTCCTAAAACGAATGAAAAATTACCCTCAGAGGATGAACAGTTATCAGATCATCAGAGGCTTTTGGATAGGCTGCAGTTGTATGATTTGGTGGAGTGTAAGGTCCAGGGAGATGGTAACTGTCAGTTTCGTGCTTTATCAGATCGATCACAAACTATATCGTTCTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

OTU

Protein Analysis

251

Amino Acids

28.15

Weight (kDa)

4.32

Isoelectric Point (pI)

32.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005498)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04250 AT5G04250
fragaria_vesca	FvH4_7g18921 FvH4_7g18921 FvH4_7g18921 FvH4_7g18921 FvH4_7g18921 FvH4_7g18921
malus_domestica	MD01G1105100.v1.1 MD07G1171600.v1.1
prunus_persica	Prupe.2G210400_v2.0.a1 Prupe.2G210400_v2.0.a1
pyrus_communis	pycom01g13160 pycom07g16570
rosa_chinensis	RchiOBHm_Chr1g0362861
rosa_laevigata	RLG00000027616
rosa_multiflora	Rmu_co8397651.1_g000001 Rmu_sc0001502.1_g000014
rosa_roxburghii	Rroxscaffold_4G00293700
rosa_rugosa	Rorug01G0302000.1 Rorug01G0302100 Rorug01G0302100 Rorug01G0302100 Rorug01G0302100
rosa_samantha	Rh1AG310900 Rh1BG274000 Rh1CG291200 Rh1DG304800
rosa_wichuraiana	Rw1G027560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	297
AccB7I	CCANNNNNTGG	1 cut(s)	67
AclWI	GGATC	2 cut(s)	29, 419
AcsI	RAATTY	1 cut(s)	524
AfaI	GTAC	3 cut(s)	106, 334, 576
AfiI	CCNNNNNNNGG	1 cut(s)	67
AgsI	TTSAA	2 cut(s)	344, 559
AjiI	CACGTC	1 cut(s)	43
AjnI	CCWGG	2 cut(s)	123, 687
AluBI	AGCT	2 cut(s)	200, 254
AluI	AGCT	2 cut(s)	200, 254
Alw26I	GTCTC	1 cut(s)	62
AlwI	GGATC	2 cut(s)	29, 419
ApeKI	GCWGC	1 cut(s)	655
ApoI	RAATTY	1 cut(s)	524
AseI	ATTAAT	1 cut(s)	483
Asp700I	GAANNNNTTC	1 cut(s)	348
AspLEI	GCGC	1 cut(s)	298
AspS9I	GGNCC	2 cut(s)	311, 685
AsuHPI	GGTGA	1 cut(s)	551
AvaII	GGWCC	2 cut(s)	311, 685
BbsI	GAAGAC	2 cut(s)	26, 498
BbvI	GCAGC	1 cut(s)	642
BccI	CCATC	5 cut(s)	69, 322, 530, 559, 689
BciT130I	CCWGG	2 cut(s)	125, 689
BclI	TGATCA	1 cut(s)	457
BcoDI	GTCTC	1 cut(s)	62
BfmI	CTRYAG	2 cut(s)	237, 656
BisI	GCNGC	1 cut(s)	656
BlsI	GCNGC	1 cut(s)	657
BmcAI	AGTACT	1 cut(s)	106
Bme1390I	CCNGG	2 cut(s)	125, 689
Bme18I	GGWCC	2 cut(s)	311, 685
BmgBI	CACGTC	1 cut(s)	43
BmgT120I	GGNCC	2 cut(s)	311, 685
BmrFI	CCNGG	2 cut(s)	125, 689
BmrI	ACTGGG	1 cut(s)	345
BmsI	GCATC	1 cut(s)	346
BmuI	ACTGGG	1 cut(s)	345
BpiI	GAAGAC	2 cut(s)	26, 498
Bsa29I	ATCGAT	1 cut(s)	727
BsaI	GGTCTC	1 cut(s)	62
BsaJI	CCNNGG	2 cut(s)	428, 688
Bsc4I	CCNNNNNNNGG	1 cut(s)	67
Bse1I	ACTGG	3 cut(s)	262, 340, 513
Bse3DI	GCAATG	1 cut(s)	291
BseBI	CCWGG	2 cut(s)	125, 689
BseCI	ATCGAT	1 cut(s)	727
BseDI	CCNNGG	2 cut(s)	428, 688
BseGI	GGATG	4 cut(s)	76, 361, 427, 622
BseLI	CCNNNNNNNGG	1 cut(s)	67
BseMI	GCAATG	1 cut(s)	291
BseMII	CTCAG	1 cut(s)	624
BseNI	ACTGG	3 cut(s)	262, 340, 513
BseXI	GCAGC	1 cut(s)	642
BseYI	CCCAGC	1 cut(s)	51
BshVI	ATCGAT	1 cut(s)	727
BslI	CCNNNNNNNGG	1 cut(s)	67
BsmAI	GTCTC	1 cut(s)	62
BsmI	GAATGC	2 cut(s)	479, 502
Bso31I	GGTCTC	1 cut(s)	62
Bsp143I	GATC	6 cut(s)	34, 424, 457, 631, 724, 728
BspCNI	CTCAG	1 cut(s)	623
BspDI	ATCGAT	1 cut(s)	727
BspMAI	CTGCAG	1 cut(s)	660
BspPI	GGATC	2 cut(s)	29, 419
BspTNI	GGTCTC	1 cut(s)	62
BsrDI	GCAATG	1 cut(s)	291
BsrI	ACTGG	3 cut(s)	262, 340, 513
BssECI	CCNNGG	2 cut(s)	428, 688
BssMI	GATC	6 cut(s)	34, 424, 457, 631, 724, 728
BssT1I	CCWWGG	1 cut(s)	428
Bst2UI	CCWGG	2 cut(s)	125, 689
Bst4CI	ACNGT	4 cut(s)	109, 329, 624, 704
Bst6I	CTCTTC	1 cut(s)	210
BstC8I	GCNNGC	1 cut(s)	231
BstDEI	CTNAG	1 cut(s)	610
BstF5I	GGATG	4 cut(s)	76, 361, 427, 622
BstHHI	GCGC	1 cut(s)	298
BstKTI	GATC	6 cut(s)	37, 427, 460, 634, 727, 731
BstMAI	GTCTC	1 cut(s)	62
BstMBI	GATC	6 cut(s)	34, 424, 457, 631, 724, 728
BstMWI	GCNNNNNNNGC	1 cut(s)	304
BstNI	CCWGG	2 cut(s)	125, 689
BstSCI	CCNGG	2 cut(s)	123, 687
BstSFI	CTRYAG	2 cut(s)	237, 656
BstV1I	GCAGC	1 cut(s)	642
BstV2I	GAAGAC	2 cut(s)	26, 498
BstXI	CCANNNNNNTGG	1 cut(s)	695
Bsu15I	ATCGAT	1 cut(s)	727
BsuTUI	ATCGAT	1 cut(s)	727
BtrI	CACGTC	1 cut(s)	43
BtsCI	GGATG	4 cut(s)	76, 361, 427, 622
BtsI	GCAGTG	1 cut(s)	460
BtsIMutI	CAGTG	3 cut(s)	334, 460, 506
Cac8I	GCNNGC	1 cut(s)	231
CfoI	GCGC	1 cut(s)	298
Cfr13I	GGNCC	2 cut(s)	311, 685
ClaI	ATCGAT	1 cut(s)	727
CseI	GACGC	1 cut(s)	273
Csp6I	GTAC	3 cut(s)	105, 333, 575
CviAII	CATG	2 cut(s)	413, 581
CviJI	RGCY	9 cut(s)	169, 200, 229, 254, 307, 340, 569, 643, 655
CviKI_1	RGCY	9 cut(s)	169, 200, 229, 254, 307, 340, 569, 643, 655
CviQI	GTAC	3 cut(s)	105, 333, 575
DdeI	CTNAG	1 cut(s)	610
DpnI	GATC	6 cut(s)	36, 426, 459, 633, 726, 730
DpnII	GATC	6 cut(s)	34, 424, 457, 631, 724, 728
Eam1104I	CTCTTC	1 cut(s)	210
EarI	CTCTTC	1 cut(s)	210
Eco130I	CCWWGG	1 cut(s)	428
Eco31I	GGTCTC	1 cut(s)	62
Eco47I	GGWCC	2 cut(s)	311, 685
EcoRII	CCWGG	2 cut(s)	123, 687
EcoT14I	CCWWGG	1 cut(s)	428
ErhI	CCWWGG	1 cut(s)	428
FaeI	CATG	2 cut(s)	416, 584
FatI	CATG	2 cut(s)	412, 580
FbaI	TGATCA	1 cut(s)	457
Fnu4HI	GCNGC	1 cut(s)	656
FokI	GGATG	4 cut(s)	83, 368, 434, 629
Fsp4HI	GCNGC	1 cut(s)	656
FspI	TGCGCA	1 cut(s)	297
GlaI	GCGC	1 cut(s)	297
GluI	GCNGC	1 cut(s)	656
GsaI	CCCAGC	1 cut(s)	55
HgaI	GACGC	1 cut(s)	273
HhaI	GCGC	1 cut(s)	298
Hin1II	CATG	2 cut(s)	416, 584
Hin6I	GCGC	1 cut(s)	296
HinP1I	GCGC	1 cut(s)	296
HinfI	GANTC	1 cut(s)	559
HphI	GGTGA	1 cut(s)	551
Hpy188I	TCNGA	5 cut(s)	564, 613, 631, 639, 724
Hpy188III	TCNNGA	6 cut(s)	38, 212, 249, 353, 533, 750
Hpy99I	CGWCG	1 cut(s)	44
HpyAV	CCTTC	3 cut(s)	149, 263, 461
HpyCH4III	ACNGT	4 cut(s)	109, 329, 624, 704
HpyCH4IV	ACGT	2 cut(s)	42, 245
HpyCH4V	TGCA	4 cut(s)	78, 359, 502, 658
HpyF10VI	GCNNNNNNNGC	1 cut(s)	304
HpyF3I	CTNAG	1 cut(s)	610
HpySE526I	ACGT	2 cut(s)	42, 245
Hsp92II	CATG	2 cut(s)	416, 584
HspAI	GCGC	1 cut(s)	296
Ksp22I	TGATCA	1 cut(s)	457
Kzo9I	GATC	6 cut(s)	34, 424, 457, 631, 724, 728
LmnI	GCTCC	1 cut(s)	251
Lsp1109I	GCAGC	1 cut(s)	642
LweI	GCATC	1 cut(s)	346
MaeII	ACGT	2 cut(s)	42, 245
MaeIII	GTNAC	2 cut(s)	109, 698
MalI	GATC	6 cut(s)	36, 426, 459, 633, 726, 730
MboI	GATC	6 cut(s)	34, 424, 457, 631, 724, 728
MboII	GAAGA	4 cut(s)	31, 227, 503, 564
MluCI	AATT	4 cut(s)	94, 480, 524, 602
MmeI	TCCRAC	1 cut(s)	258
MnlI	CCTC	6 cut(s)	219, 439, 588, 607, 619, 633
MroXI	GAANNNNTTC	1 cut(s)	348
MseI	TTAA	2 cut(s)	5, 483
MslI	CAYNNNNRTG	1 cut(s)	380
MspR9I	CCNGG	2 cut(s)	125, 689
Mva1269I	GAATGC	2 cut(s)	479, 502
MvaI	CCWGG	2 cut(s)	125, 689
MwoI	GCNNNNNNNGC	1 cut(s)	304
NdeII	GATC	6 cut(s)	34, 424, 457, 631, 724, 728
NlaIII	CATG	2 cut(s)	416, 584
NsbI	TGCGCA	1 cut(s)	297
PctI	GAATGC	2 cut(s)	479, 502
PdmI	GAANNNNTTC	1 cut(s)	348
PfeI	GAWTC	1 cut(s)	559
PflMI	CCANNNNNTGG	1 cut(s)	67
PkrI	GCNGC	1 cut(s)	657
PshBI	ATTAAT	1 cut(s)	483
Psp6I	CCWGG	2 cut(s)	123, 687
PspFI	CCCAGC	1 cut(s)	51
PspGI	CCWGG	2 cut(s)	123, 687
PspPI	GGNCC	2 cut(s)	311, 685
PsrI	GAACNNNNNNTAC	2 cut(s)	567, 599
PstI	CTGCAG	1 cut(s)	660
RsaI	GTAC	3 cut(s)	106, 334, 576
RsaNI	GTAC	3 cut(s)	105, 333, 575
RseI	CAYNNNNRTG	1 cut(s)	380
SaqAI	TTAA	2 cut(s)	5, 483
SatI	GCNGC	1 cut(s)	656
Sau3AI	GATC	6 cut(s)	34, 424, 457, 631, 724, 728
Sau96I	GGNCC	2 cut(s)	311, 685
ScaI	AGTACT	1 cut(s)	106
ScrFI	CCNGG	2 cut(s)	125, 689
SetI	ASST	9 cut(s)	33, 45, 160, 202, 248, 256, 450, 580, 687
SfaNI	GCATC	1 cut(s)	346
SfcI	CTRYAG	2 cut(s)	237, 656
SinI	GGWCC	2 cut(s)	311, 685
SmiMI	CAYNNNNRTG	1 cut(s)	380
Sse9I	AATT	4 cut(s)	94, 480, 524, 602
StyD4I	CCNGG	2 cut(s)	123, 687
StyI	CCWWGG	1 cut(s)	428
TaaI	ACNGT	4 cut(s)	109, 329, 624, 704
TaiI	ACGT	2 cut(s)	45, 248
TaqI	TCGA	3 cut(s)	86, 224, 727
TasI	AATT	4 cut(s)	94, 480, 524, 602
TatI	WGTACW	1 cut(s)	104
TfiI	GAWTC	1 cut(s)	559
Tru1I	TTAA	2 cut(s)	5, 483
Tru9I	TTAA	2 cut(s)	5, 483
TscAI	CASTG	3 cut(s)	334, 467, 513
TseI	GCWGC	1 cut(s)	655
TspDTI	ATGAA	4 cut(s)	32, 537, 612, 633
TspRI	CASTG	3 cut(s)	334, 467, 513
Van91I	CCANNNNNTGG	1 cut(s)	67
VpaK11BI	GGWCC	2 cut(s)	311, 685
VspI	ATTAAT	1 cut(s)	483
XapI	RAATTY	1 cut(s)	524
XmnI	GAANNNNTTC	1 cut(s)	348
ZrmI	AGTACT	1 cut(s)	106

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.