Rw1G027560

OTU domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0005498
Physical Location & Seq
Reverse (-)
55103352 .. 55107521
4170 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G027560.1

Sequence Viewer

Length: 1002 bp
ATGTTATACAAGAACATGGCAAATTGGAACCTTGATCAGGATGTTGTTCGTTGGGGTTTGCATCATCTCTTGGATTGTACTCTTTCGAATGATTTTTCTCGAAGTACTGTTACTGAATATCAATGGGACTCTAGTCAAGTAGAGTGTGTAAACGAAGGTTATGTTGAGCCTTGTTGTGTGGAGAACGATGAGGTTTTAGCTCGTGCGTTGCAAGAAGAGCTATCTAGACTTGCAAAGGAAGAGGCCGCGGGAGTTTCTAGTTATGGAGATGCGCCTTTGCAAGCGTCGATTCTTGCACAGGATTGGCTCGGTCCTTCAAGCAGACACAATGGTTCTGGGCTTGAAAATGTTCAGGATGCAGTGAATGATTTTGGCAGGATGATGGACAACAATGATTATAGAAATCAGGAAAATGAGGGGGATGGTCCTAGGAGAAATGGAAATGGGGAAGCATATGAAAACAGTGATGGAGAGCACTCGGTGGATGGGGAAGACTTGTTGCATCCGTGGGATATAACAGATGAGTATGCTCTTGATGGTGAAGTAGGGAGAAGATTGAATCAGATGGTTCCTGTTCCTCATATTCCTAAAACGAATGAGAAAATACCCACAGTTGATGAAGAGATATCAGATCATCAGAGGCTTATTGAAAGACTGAAGTTGTATGAGTTGGTGGAGTGTAAGATCCCGGGAGATGGGAACTGTCAGTTTCGCGCTTTATCAGATCAACTATATCGTTCTTCTGAATACCATGGCCTTGTAAGAGATCAAATTATTCAACAGCTCAAGAATCACCCCGAAATATATGATGGTTACGTTCCGATGGGTTATGTTGATTACTTAAAGAAAATGAGCAAGAGTGGTGAATGGGGCGACCATGTCACGTTGCAGGCTGCTGCAGATTCGTATGGTGTCAAGATAGTTGTTATCACTTCTTTCAAGGATACATGTATATTGAGATCCTTCCACATGTTTCAAAATCTAGTAGAGTTATCTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
OTU

Protein Analysis

333

Amino Acids

37.8

Weight (kDa)

4.6

Isoelectric Point (pI)

39.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
OTU PF02338 230 - 318 4e-11 OTU-like cysteine protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 248, 714
AciI CCGC 2 cut(s) 246, 248
AclWI GGATC 2 cut(s) 679, 954
AcuI CTGAAG 1 cut(s) 677
AdeI CACNNNGTG 1 cut(s) 481
AfaI GTAC 2 cut(s) 79, 106
AfiI CCNNNNNNNGG 2 cut(s) 37, 695
AflIII ACRYGT 2 cut(s) 947, 969
AgsI TTSAA 7 cut(s) 318, 344, 559, 650, 779, 940, 977
AluBI AGCT 3 cut(s) 200, 220, 784
AluI AGCT 3 cut(s) 200, 220, 784
Alw21I GWGCWC 1 cut(s) 477
AlwI GGATC 2 cut(s) 679, 954
Ama87I CYCGRG 1 cut(s) 688
AoxI GGCC 2 cut(s) 243, 754
ApeKI GCWGC 2 cut(s) 893, 896
Asp700I GAANNNNTTC 1 cut(s) 348
AspA2I CCTAGG 1 cut(s) 428
AspLEI GCGC 2 cut(s) 274, 716
AspS9I GGNCC 2 cut(s) 311, 425
AsuC2I CCSGG 2 cut(s) 689, 690
AsuHPI GGTGA 3 cut(s) 551, 785, 875
AsuII TTCGAA 1 cut(s) 86
AvaI CYCGRG 1 cut(s) 688
AvaII GGWCC 2 cut(s) 311, 425
AvrII CCTAGG 1 cut(s) 428
BarI GAAGNNNNNNTAC 2 cut(s) 94, 126
BauI CACGAG 1 cut(s) 201
BbsI GAAGAC 1 cut(s) 498
Bbv12I GWGCWC 1 cut(s) 477
BbvI GCAGC 2 cut(s) 880, 883
BccI CCATC 9 cut(s) 376, 416, 461, 479, 530, 559, 689, 803, 817
BciVI GTATCC 1 cut(s) 937
BclI TGATCA 1 cut(s) 34
BcnI CCSGG 2 cut(s) 689, 690
BfaI CTAG 5 cut(s) 132, 225, 258, 429, 983
BfmI CTRYAG 1 cut(s) 897
BfuI GTATCC 1 cut(s) 937
BisI GCNGC 3 cut(s) 246, 894, 897
BlnI CCTAGG 1 cut(s) 428
BlsI GCNGC 3 cut(s) 247, 895, 898
BmcAI AGTACT 1 cut(s) 106
Bme1390I CCNGG 2 cut(s) 689, 690
Bme18I GGWCC 2 cut(s) 311, 425
BmeT110I CYCGRG 1 cut(s) 688
BmgT120I GGNCC 2 cut(s) 311, 425
BmiI GGNNCC 2 cut(s) 29, 570
BmrFI CCNGG 2 cut(s) 689, 690
BmsI GCATC 4 cut(s) 70, 259, 346, 511
BoxI GACNNNNGTC 1 cut(s) 132
BpiI GAAGAC 1 cut(s) 498
Bpu14I TTCGAA 1 cut(s) 86
BpuEI CTTGAG 1 cut(s) 770
BpuMI CCSGG 2 cut(s) 689, 690
BsaJI CCNNGG 5 cut(s) 246, 428, 506, 688, 751
Bsc4I CCNNNNNNNGG 2 cut(s) 37, 695
BseDI CCNNGG 5 cut(s) 246, 428, 506, 688, 751
BseGI GGATG 6 cut(s) 46, 361, 384, 427, 490, 502
BseLI CCNNNNNNNGG 2 cut(s) 37, 695
BseXI GCAGC 2 cut(s) 880, 883
Bsh1236I CGCG 2 cut(s) 248, 714
BshFI GGCC 2 cut(s) 245, 756
BsiHKAI GWGCWC 1 cut(s) 477
BsiHKCI CYCGRG 1 cut(s) 688
BsiSI CCGG 1 cut(s) 689
BslFI GGGAC 1 cut(s) 140
BslI CCNNNNNNNGG 2 cut(s) 37, 695
BsmFI GGGAC 1 cut(s) 140
BsnI GGCC 2 cut(s) 245, 756
BsoBI CYCGRG 1 cut(s) 688
Bsp119I TTCGAA 1 cut(s) 86
Bsp1286I GDGCHC 1 cut(s) 477
Bsp143I GATC 6 cut(s) 34, 631, 684, 724, 766, 959
Bsp19I CCATGG 1 cut(s) 751
BspACI CCGC 2 cut(s) 246, 248
BspANI GGCC 2 cut(s) 245, 756
BspFNI CGCG 2 cut(s) 248, 714
BspLI GGNNCC 2 cut(s) 29, 570
BspMAI CTGCAG 1 cut(s) 901
BspPI GGATC 2 cut(s) 679, 954
BspQI GCTCTTC 1 cut(s) 210
BspT104I TTCGAA 1 cut(s) 86
BssECI CCNNGG 5 cut(s) 246, 428, 506, 688, 751
BssMI GATC 6 cut(s) 34, 631, 684, 724, 766, 959
BssSI CACGAG 1 cut(s) 201
BssT1I CCWWGG 2 cut(s) 428, 751
Bst2BI CACGAG 1 cut(s) 201
Bst4CI ACNGT 4 cut(s) 109, 464, 613, 704
Bst6I CTCTTC 3 cut(s) 210, 234, 615
BstBI TTCGAA 1 cut(s) 86
BstC8I GCNNGC 2 cut(s) 282, 891
BstDSI CCRYGG 3 cut(s) 246, 506, 751
BstENI CCTNNNNNAGG 1 cut(s) 35
BstF5I GGATG 6 cut(s) 46, 361, 384, 427, 490, 502
BstFNI CGCG 2 cut(s) 248, 714
BstHHI GCGC 2 cut(s) 274, 716
BstKTI GATC 6 cut(s) 37, 634, 687, 727, 769, 962
BstMBI GATC 6 cut(s) 34, 631, 684, 724, 766, 959
BstMWI GCNNNNNNNGC 1 cut(s) 217
BstNSI RCATGY 2 cut(s) 951, 973
BstPAI GACNNNNGTC 1 cut(s) 132
BstSCI CCNGG 2 cut(s) 687, 688
BstSFI CTRYAG 1 cut(s) 897
BstUI CGCG 2 cut(s) 248, 714
BstV1I GCAGC 2 cut(s) 880, 883
BstV2I GAAGAC 1 cut(s) 498
BstX2I RGATCY 2 cut(s) 684, 959
BstYI RGATCY 2 cut(s) 684, 959
BsuI GTATCC 1 cut(s) 937
BsuRI GGCC 2 cut(s) 245, 756
BtgI CCRYGG 3 cut(s) 246, 506, 751
BtsCI GGATG 6 cut(s) 46, 361, 384, 427, 490, 502
BtsI GCAGTG 1 cut(s) 366
BtsIMutI CAGTG 2 cut(s) 366, 469
Cac8I GCNNGC 2 cut(s) 282, 891
CfoI GCGC 2 cut(s) 274, 716
Cfr13I GGNCC 2 cut(s) 311, 425
Cfr42I CCGCGG 1 cut(s) 249
Cfr9I CCCGGG 1 cut(s) 688
CseI GACGC 1 cut(s) 273
Csp6I GTAC 2 cut(s) 78, 105
CviAII CATG 5 cut(s) 16, 752, 878, 948, 970
CviQI GTAC 2 cut(s) 78, 105
DpnI GATC 6 cut(s) 36, 633, 686, 726, 768, 961
DpnII GATC 6 cut(s) 34, 631, 684, 724, 766, 959
DraIII CACNNNGTG 1 cut(s) 481
Eam1104I CTCTTC 3 cut(s) 210, 234, 615
EarI CTCTTC 3 cut(s) 210, 234, 615
Eco130I CCWWGG 2 cut(s) 428, 751
Eco32I GATATC 1 cut(s) 627
Eco47I GGWCC 2 cut(s) 311, 425
Eco57I CTGAAG 1 cut(s) 677
Eco88I CYCGRG 1 cut(s) 688
EcoNI CCTNNNNNAGG 1 cut(s) 35
EcoRV GATATC 1 cut(s) 627
EcoT14I CCWWGG 2 cut(s) 428, 751
ErhI CCWWGG 2 cut(s) 428, 751
FaeI CATG 5 cut(s) 19, 755, 881, 951, 973
FaqI GGGAC 1 cut(s) 140
FatI CATG 5 cut(s) 15, 751, 877, 947, 969
FauI CCCGC 1 cut(s) 241
FauNDI CATATG 1 cut(s) 454
FbaI TGATCA 1 cut(s) 34
Fnu4HI GCNGC 3 cut(s) 246, 894, 897
FokI GGATG 6 cut(s) 53, 368, 391, 434, 489, 497
Fsp4HI GCNGC 3 cut(s) 246, 894, 897
FspBI CTAG 5 cut(s) 132, 225, 258, 429, 983
GlaI GCGC 2 cut(s) 273, 715
GluI GCNGC 3 cut(s) 246, 894, 897
HaeIII GGCC 2 cut(s) 245, 756
HapII CCGG 1 cut(s) 689
HgaI GACGC 1 cut(s) 273
HhaI GCGC 2 cut(s) 274, 716
Hin1II CATG 5 cut(s) 19, 755, 881, 951, 973
Hin6I GCGC 2 cut(s) 272, 714
HinP1I GCGC 2 cut(s) 272, 714
HinfI GANTC 5 cut(s) 128, 289, 559, 790, 902
HpaII CCGG 1 cut(s) 689
HphI GGTGA 3 cut(s) 551, 785, 875
Hpy166II GTNNAC 1 cut(s) 151
Hpy188I TCNGA 6 cut(s) 564, 631, 639, 724, 745, 822
Hpy188III TCNNGA 8 cut(s) 38, 99, 225, 353, 407, 533, 787, 916
Hpy8I GTNNAC 1 cut(s) 151
Hpy99I CGWCG 1 cut(s) 289
HpyAV CCTTC 3 cut(s) 149, 324, 973
HpyCH4III ACNGT 4 cut(s) 109, 464, 613, 704
HpyCH4IV ACGT 2 cut(s) 816, 884
HpyCH4V TGCA 9 cut(s) 61, 211, 233, 280, 296, 359, 502, 889, 899
HpyF10VI GCNNNNNNNGC 1 cut(s) 217
HpySE526I ACGT 2 cut(s) 816, 884
Hsp92II CATG 5 cut(s) 19, 755, 881, 951, 973
HspAI GCGC 2 cut(s) 272, 714
Ksp22I TGATCA 1 cut(s) 34
KspI CCGCGG 1 cut(s) 249
Kzo9I GATC 6 cut(s) 34, 631, 684, 724, 766, 959
LguI GCTCTTC 1 cut(s) 210
LpnPI CCDG 9 cut(s) 23, 284, 321, 338, 361, 392, 585, 702, 875
Lsp1109I GCAGC 2 cut(s) 880, 883
LweI GCATC 4 cut(s) 70, 259, 346, 511
MaeI CTAG 5 cut(s) 132, 225, 258, 429, 983
MaeII ACGT 2 cut(s) 816, 884
MaeIII GTNAC 3 cut(s) 109, 812, 880
MalI GATC 6 cut(s) 36, 633, 686, 726, 768, 961
MboI GATC 6 cut(s) 34, 631, 684, 724, 766, 959
MboII GAAGA 6 cut(s) 227, 251, 503, 564, 632, 732
MflI RGATCY 2 cut(s) 684, 959
MhlI GDGCHC 1 cut(s) 477
MluCI AATT 2 cut(s) 22, 771
MlyI GAGTC 1 cut(s) 122
MnlI CCTC 5 cut(s) 184, 235, 409, 588, 633
MroXI GAANNNNTTC 1 cut(s) 348
MseI TTAA 1 cut(s) 842
MspA1I CMGCKG 1 cut(s) 248
MspI CCGG 1 cut(s) 689
MspR9I CCNGG 2 cut(s) 689, 690
MvnI CGCG 2 cut(s) 248, 714
MwoI GCNNNNNNNGC 1 cut(s) 217
NciI CCSGG 2 cut(s) 689, 690
NcoI CCATGG 1 cut(s) 751
NdeI CATATG 1 cut(s) 454
NdeII GATC 6 cut(s) 34, 631, 684, 724, 766, 959
NlaIII CATG 5 cut(s) 19, 755, 881, 951, 973
NlaIV GGNNCC 2 cut(s) 29, 570
NmuCI GTSAC 1 cut(s) 880
NspI RCATGY 2 cut(s) 951, 973
NspV TTCGAA 1 cut(s) 86
PciI ACATGT 2 cut(s) 947, 969
PciSI GCTCTTC 1 cut(s) 210
PdmI GAANNNNTTC 1 cut(s) 348
PfeI GAWTC 4 cut(s) 289, 559, 790, 902
PflFI GACNNNGTC 1 cut(s) 878
PkrI GCNGC 3 cut(s) 247, 895, 898
PleI GAGTC 1 cut(s) 122
PpsI GAGTC 1 cut(s) 122
PscI ACATGT 2 cut(s) 947, 969
PshAI GACNNNNGTC 1 cut(s) 132
PspN4I GGNNCC 2 cut(s) 29, 570
PspPI GGNCC 2 cut(s) 311, 425
PstI CTGCAG 1 cut(s) 901
PsuI RGATCY 2 cut(s) 684, 959
PsyI GACNNNGTC 1 cut(s) 878
RsaI GTAC 2 cut(s) 79, 106
RsaNI GTAC 2 cut(s) 78, 105
SacII CCGCGG 1 cut(s) 249
SapI GCTCTTC 1 cut(s) 210
SaqAI TTAA 1 cut(s) 842
SatI GCNGC 3 cut(s) 246, 894, 897
Sau3AI GATC 6 cut(s) 34, 631, 684, 724, 766, 959
Sau96I GGNCC 2 cut(s) 311, 425
ScaI AGTACT 1 cut(s) 106
SchI GAGTC 1 cut(s) 122
ScrFI CCNGG 2 cut(s) 689, 690
SduI GDGCHC 1 cut(s) 477
SetI ASST 8 cut(s) 33, 160, 195, 202, 222, 786, 819, 887
SfaNI GCATC 4 cut(s) 70, 259, 346, 511
SfcI CTRYAG 1 cut(s) 897
Sfr303I CCGCGG 1 cut(s) 249
SfuI TTCGAA 1 cut(s) 86
SgrBI CCGCGG 1 cut(s) 249
SinI GGWCC 2 cut(s) 311, 425
SmaI CCCGGG 1 cut(s) 690
SmlI CTYRAG 1 cut(s) 785
SmoI CTYRAG 1 cut(s) 785
Sse9I AATT 2 cut(s) 22, 771
SsiI CCGC 2 cut(s) 246, 248
SspMI CTAG 5 cut(s) 132, 225, 258, 429, 983
StyD4I CCNGG 2 cut(s) 687, 688
StyI CCWWGG 2 cut(s) 428, 751
TaaI ACNGT 4 cut(s) 109, 464, 613, 704
TaiI ACGT 2 cut(s) 819, 887
TaqI TCGA 3 cut(s) 86, 100, 287
TaqII GACCGA 1 cut(s) 299
TasI AATT 2 cut(s) 22, 771
TatI WGTACW 2 cut(s) 77, 104
TauI GCSGC 1 cut(s) 248
TfiI GAWTC 4 cut(s) 289, 559, 790, 902
Tru1I TTAA 1 cut(s) 842
Tru9I TTAA 1 cut(s) 842
TscAI CASTG 2 cut(s) 366, 469
TseFI GTSAC 1 cut(s) 880
TseI GCWGC 2 cut(s) 893, 896
Tsp45I GTSAC 1 cut(s) 880
TspDTI ATGAA 2 cut(s) 471, 633
TspGWI ACGGA 1 cut(s) 495
TspMI CCCGGG 1 cut(s) 688
TspRI CASTG 2 cut(s) 366, 469
Tth111I GACNNNGTC 1 cut(s) 878
VpaK11BI GGWCC 2 cut(s) 311, 425
XagI CCTNNNNNAGG 1 cut(s) 35
XbaI TCTAGA 1 cut(s) 224
XceI RCATGY 2 cut(s) 951, 973
XmaI CCCGGG 1 cut(s) 688
XmaJI CCTAGG 1 cut(s) 428
XmnI GAANNNNTTC 1 cut(s) 348
XspI CTAG 5 cut(s) 132, 225, 258, 429, 983
ZrmI AGTACT 1 cut(s) 106
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.