Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0005498

Physical Location & Seq

Genomic Coordinates Reverse (-)

18978686 .. 18982186

Gene Structure 3501 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g16570.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1005 bp

ATGTTACACAAGCAGATGACAACATATAATCTTGATCCCGACGTGGTTCGATGGGGTCTCCATCTCTTGGATGTTTGCACGATGTCGAATGATAATTCTCATAGTACTGTTACGCAATACGACCAGGATTTTAGTCAAGTAGAGTATGTTAGAGAAGGTTATGTTGAGCCTTGTAATGTGGAGAATGATGAGATTATAGCTCAAGCTTATCAAGAAGAGTTGTCAAGGCTCACTTCTGTAGAAAAGTCAGGAGCTTCTGGTTATGGAGATGGGCAGTTGGAAGCGTCAATTCTTGCGCAGGATTGGCTTGGTGCTTCAAATAGGCACAATGGTACTGGGCTTGAAAATGTTCAGGATGCAGTAAATTACTATGGCAGAAATATGGATACCGATGATTATAGAAATAAGCAACATGAGGCGCATGATCCAAGGAGAATTGGAAACGAGGTAGCAAATGATCACTGCGAAGGAGAATACTCAATTAATGGGGAAGACTTTTTGCACTTGCTGGATATAACAGATGAATCTTCTCTTGATGGTGAAGTAGGGAGAAGATTGAATCAGATGGCTTCTGTACCTCATATTCCTAAAACGAACGAGAAATTACCCTCAGAGGATGAAGAGATATCAGATCATCAGAGGCTTTTAGAAAGACTGCAGTTGTATGATTTGGTGGAGTGTAAGGTCCAGGGAGATGGTAACTGTCAGTTTCGTGCTTTATCTGATCAACTATATCGTTCTCCTGAATACCATGGTGTTGTAAGAGACCAAATTATTCAACAGCTGAAGAGTCACCCCGAAATGTATGAGGGTTATGTTCCTATGGGTTATGCTGATTATCTAAAGAAGATGAGCAAGAATGGTGAATGGGGTGATCATGTCACATTGCAGGCGGCCTCAGATTCGTATGGTGTAAAGATATTTGTAATAACTTCCTTCCGGGATACATGTTACATTGATCGATCCTTCCACACGTTGAAAAATCCAACAGAGTTATCTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

OTU

Protein Analysis

335

Amino Acids

38.12

Weight (kDa)

4.7

Isoelectric Point (pI)

37.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005498)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04250 AT5G04250
fragaria_vesca	FvH4_7g18921 FvH4_7g18921 FvH4_7g18921 FvH4_7g18921 FvH4_7g18921 FvH4_7g18921
malus_domestica	MD01G1105100.v1.1 MD07G1171600.v1.1
prunus_persica	Prupe.2G210400_v2.0.a1 Prupe.2G210400_v2.0.a1
pyrus_communis	pycom01g13160 pycom07g16570
rosa_chinensis	RchiOBHm_Chr1g0362861
rosa_laevigata	RLG00000027616
rosa_multiflora	Rmu_co8397651.1_g000001 Rmu_sc0001502.1_g000014
rosa_roxburghii	Rroxscaffold_4G00293700
rosa_rugosa	Rorug01G0302000.1 Rorug01G0302100 Rorug01G0302100 Rorug01G0302100 Rorug01G0302100
rosa_samantha	Rh1AG310900 Rh1BG274000 Rh1CG291200 Rh1DG304800
rosa_wichuraiana	Rw1G027560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	297
AccB7I	CCANNNNNTGG	1 cut(s)	67
AciI	CCGC	1 cut(s)	893
AclWI	GGATC	3 cut(s)	29, 419, 957
AcuI	CTGAAG	1 cut(s)	806
AfaI	GTAC	3 cut(s)	106, 334, 576
AfiI	CCNNNNNNNGG	1 cut(s)	67
AflIII	ACRYGT	2 cut(s)	947, 972
AgsI	TTSAA	5 cut(s)	318, 344, 559, 779, 979
AjiI	CACGTC	1 cut(s)	43
AjnI	CCWGG	2 cut(s)	123, 687
AluBI	AGCT	4 cut(s)	200, 206, 254, 784
AluI	AGCT	4 cut(s)	200, 206, 254, 784
Alw26I	GTCTC	2 cut(s)	62, 759
AlwI	GGATC	3 cut(s)	29, 419, 957
AoxI	GGCC	1 cut(s)	894
AseI	ATTAAT	1 cut(s)	483
Asp700I	GAANNNNTTC	1 cut(s)	348
AspLEI	GCGC	2 cut(s)	298, 421
AspS9I	GGNCC	1 cut(s)	685
AsuC2I	CCSGG	1 cut(s)	941
AsuHPI	GGTGA	4 cut(s)	551, 785, 875, 884
AvaII	GGWCC	1 cut(s)	685
BbsI	GAAGAC	1 cut(s)	498
BccI	CCATC	6 cut(s)	45, 69, 263, 530, 559, 689
BciT130I	CCWGG	2 cut(s)	125, 689
BciVI	GTATCC	2 cut(s)	379, 937
BclI	TGATCA	3 cut(s)	457, 724, 874
BcnI	CCSGG	1 cut(s)	941
BcoDI	GTCTC	2 cut(s)	62, 759
BfmI	CTRYAG	2 cut(s)	237, 656
BfuI	GTATCC	2 cut(s)	379, 937
BisI	GCNGC	1 cut(s)	894
BlsI	GCNGC	1 cut(s)	895
BmcAI	AGTACT	1 cut(s)	106
Bme1390I	CCNGG	3 cut(s)	125, 689, 941
Bme18I	GGWCC	1 cut(s)	685
BmgBI	CACGTC	1 cut(s)	43
BmgT120I	GGNCC	1 cut(s)	685
BmrFI	CCNGG	3 cut(s)	125, 689, 941
BmrI	ACTGGG	1 cut(s)	345
BmsI	GCATC	1 cut(s)	346
BmuI	ACTGGG	1 cut(s)	345
BpiI	GAAGAC	1 cut(s)	498
BpuEI	CTTGAG	1 cut(s)	186
BpuMI	CCSGG	1 cut(s)	941
Bsa29I	ATCGAT	1 cut(s)	961
BsaI	GGTCTC	2 cut(s)	62, 759
BsaJI	CCNNGG	3 cut(s)	428, 688, 751
Bsc4I	CCNNNNNNNGG	1 cut(s)	67
Bse1I	ACTGG	1 cut(s)	340
Bse3DI	GCAATG	1 cut(s)	884
BseBI	CCWGG	2 cut(s)	125, 689
BseCI	ATCGAT	1 cut(s)	961
BseDI	CCNNGG	3 cut(s)	428, 688, 751
BseGI	GGATG	3 cut(s)	76, 361, 622
BseLI	CCNNNNNNNGG	1 cut(s)	67
BseMI	GCAATG	1 cut(s)	884
BseMII	CTCAG	2 cut(s)	624, 912
BseNI	ACTGG	1 cut(s)	340
BshFI	GGCC	1 cut(s)	896
BshVI	ATCGAT	1 cut(s)	961
BsiSI	CCGG	1 cut(s)	940
BslI	CCNNNNNNNGG	1 cut(s)	67
BsmAI	GTCTC	2 cut(s)	62, 759
BsnI	GGCC	1 cut(s)	896
Bso31I	GGTCTC	2 cut(s)	62, 759
Bsp143I	GATC	8 cut(s)	34, 424, 457, 631, 724, 874, 958, 962
Bsp19I	CCATGG	1 cut(s)	751
BspACI	CCGC	1 cut(s)	893
BspANI	GGCC	1 cut(s)	896
BspCNI	CTCAG	2 cut(s)	623, 911
BspDI	ATCGAT	1 cut(s)	961
BspMAI	CTGCAG	1 cut(s)	660
BspPI	GGATC	3 cut(s)	29, 419, 957
BspTNI	GGTCTC	2 cut(s)	62, 759
BsrDI	GCAATG	1 cut(s)	884
BsrI	ACTGG	1 cut(s)	340
BssECI	CCNNGG	3 cut(s)	428, 688, 751
BssMI	GATC	8 cut(s)	34, 424, 457, 631, 724, 874, 958, 962
BssT1I	CCWWGG	2 cut(s)	428, 751
Bst2UI	CCWGG	2 cut(s)	125, 689
Bst4CI	ACNGT	2 cut(s)	109, 704
Bst6I	CTCTTC	3 cut(s)	210, 615, 782
BstC8I	GCNNGC	1 cut(s)	891
BstDEI	CTNAG	2 cut(s)	610, 898
BstDSI	CCRYGG	1 cut(s)	751
BstF5I	GGATG	3 cut(s)	76, 361, 622
BstHHI	GCGC	2 cut(s)	298, 421
BstKTI	GATC	8 cut(s)	37, 427, 460, 634, 727, 877, 961, 965
BstMAI	GTCTC	2 cut(s)	62, 759
BstMBI	GATC	8 cut(s)	34, 424, 457, 631, 724, 874, 958, 962
BstMWI	GCNNNNNNNGC	1 cut(s)	304
BstNI	CCWGG	2 cut(s)	125, 689
BstNSI	RCATGY	1 cut(s)	951
BstSCI	CCNGG	3 cut(s)	123, 687, 939
BstSFI	CTRYAG	2 cut(s)	237, 656
BstV2I	GAAGAC	1 cut(s)	498
BstXI	CCANNNNNNTGG	1 cut(s)	695
Bsu15I	ATCGAT	1 cut(s)	961
BsuI	GTATCC	2 cut(s)	379, 937
BsuRI	GGCC	1 cut(s)	896
BsuTUI	ATCGAT	1 cut(s)	961
BtgI	CCRYGG	1 cut(s)	751
BtrI	CACGTC	1 cut(s)	43
BtsCI	GGATG	3 cut(s)	76, 361, 622
BtsI	GCAGTG	1 cut(s)	460
BtsIMutI	CAGTG	1 cut(s)	460
Cac8I	GCNNGC	1 cut(s)	891
CfoI	GCGC	2 cut(s)	298, 421
Cfr13I	GGNCC	1 cut(s)	685
ClaI	ATCGAT	1 cut(s)	961
CseI	GACGC	1 cut(s)	273
Csp6I	GTAC	3 cut(s)	105, 333, 575
CviAII	CATG	5 cut(s)	413, 422, 752, 878, 948
CviQI	GTAC	3 cut(s)	105, 333, 575
DdeI	CTNAG	2 cut(s)	610, 898
DpnI	GATC	8 cut(s)	36, 426, 459, 633, 726, 876, 960, 964
DpnII	GATC	8 cut(s)	34, 424, 457, 631, 724, 874, 958, 962
Eam1104I	CTCTTC	3 cut(s)	210, 615, 782
EarI	CTCTTC	3 cut(s)	210, 615, 782
Eco130I	CCWWGG	2 cut(s)	428, 751
Eco31I	GGTCTC	2 cut(s)	62, 759
Eco32I	GATATC	1 cut(s)	627
Eco47I	GGWCC	1 cut(s)	685
Eco57I	CTGAAG	1 cut(s)	806
EcoRII	CCWGG	2 cut(s)	123, 687
EcoRV	GATATC	1 cut(s)	627
EcoT14I	CCWWGG	2 cut(s)	428, 751
ErhI	CCWWGG	2 cut(s)	428, 751
FaeI	CATG	5 cut(s)	416, 425, 755, 881, 951
FalI	AAGNNNNNCTT	2 cut(s)	217, 249
FatI	CATG	5 cut(s)	412, 421, 751, 877, 947
FbaI	TGATCA	3 cut(s)	457, 724, 874
Fnu4HI	GCNGC	1 cut(s)	894
FokI	GGATG	3 cut(s)	83, 368, 629
Fsp4HI	GCNGC	1 cut(s)	894
FspI	TGCGCA	1 cut(s)	297
GlaI	GCGC	2 cut(s)	297, 420
GluI	GCNGC	1 cut(s)	894
HaeIII	GGCC	1 cut(s)	896
HapII	CCGG	1 cut(s)	940
HgaI	GACGC	1 cut(s)	273
HhaI	GCGC	2 cut(s)	298, 421
Hin1II	CATG	5 cut(s)	416, 425, 755, 881, 951
Hin6I	GCGC	2 cut(s)	296, 419
HinP1I	GCGC	2 cut(s)	296, 419
HindIII	AAGCTT	1 cut(s)	204
HinfI	GANTC	4 cut(s)	524, 559, 790, 902
HpaII	CCGG	1 cut(s)	940
HphI	GGTGA	4 cut(s)	551, 785, 875, 884
Hpy188I	TCNGA	6 cut(s)	564, 613, 631, 639, 724, 901
Hpy188III	TCNNGA	7 cut(s)	32, 38, 212, 249, 353, 533, 743
Hpy99I	CGWCG	1 cut(s)	44
HpyAV	CCTTC	4 cut(s)	149, 461, 946, 976
HpyCH4III	ACNGT	2 cut(s)	109, 704
HpyCH4IV	ACGT	2 cut(s)	42, 974
HpyCH4V	TGCA	5 cut(s)	78, 359, 502, 658, 889
HpyF10VI	GCNNNNNNNGC	1 cut(s)	304
HpyF3I	CTNAG	2 cut(s)	610, 898
HpySE526I	ACGT	2 cut(s)	42, 974
Hsp92II	CATG	5 cut(s)	416, 425, 755, 881, 951
HspAI	GCGC	2 cut(s)	296, 419
Ksp22I	TGATCA	3 cut(s)	457, 724, 874
Kzo9I	GATC	8 cut(s)	34, 424, 457, 631, 724, 874, 958, 962
LmnI	GCTCC	1 cut(s)	251
LweI	GCATC	1 cut(s)	346
MaeII	ACGT	2 cut(s)	42, 974
MaeIII	GTNAC	6 cut(s)	3, 109, 698, 791, 880, 950
MalI	GATC	8 cut(s)	36, 426, 459, 633, 726, 876, 960, 964
MboI	GATC	8 cut(s)	34, 424, 457, 631, 724, 874, 958, 962
MboII	GAAGA	7 cut(s)	227, 503, 519, 564, 632, 799, 859
MluCI	AATT	7 cut(s)	94, 288, 364, 435, 480, 602, 771
MlyI	GAGTC	1 cut(s)	799
MmeI	TCCRAC	1 cut(s)	258
MnlI	CCTC	8 cut(s)	409, 439, 588, 607, 619, 633, 802, 907
MroXI	GAANNNNTTC	1 cut(s)	348
MseI	TTAA	1 cut(s)	483
MspA1I	CMGCKG	1 cut(s)	784
MspI	CCGG	1 cut(s)	940
MspR9I	CCNGG	3 cut(s)	125, 689, 941
MvaI	CCWGG	2 cut(s)	125, 689
MwoI	GCNNNNNNNGC	1 cut(s)	304
NciI	CCSGG	1 cut(s)	941
NcoI	CCATGG	1 cut(s)	751
NdeII	GATC	8 cut(s)	34, 424, 457, 631, 724, 874, 958, 962
NlaIII	CATG	5 cut(s)	416, 425, 755, 881, 951
NmuCI	GTSAC	2 cut(s)	791, 880
NsbI	TGCGCA	1 cut(s)	297
NspI	RCATGY	1 cut(s)	951
PciI	ACATGT	1 cut(s)	947
PdmI	GAANNNNTTC	1 cut(s)	348
PfeI	GAWTC	3 cut(s)	524, 559, 902
PflMI	CCANNNNNTGG	1 cut(s)	67
PfoI	TCCNGGA	1 cut(s)	939
PkrI	GCNGC	1 cut(s)	895
PleI	GAGTC	1 cut(s)	798
PpsI	GAGTC	1 cut(s)	798
PscI	ACATGT	1 cut(s)	947
PshBI	ATTAAT	1 cut(s)	483
Psp6I	CCWGG	2 cut(s)	123, 687
PspGI	CCWGG	2 cut(s)	123, 687
PspPI	GGNCC	1 cut(s)	685
PstI	CTGCAG	1 cut(s)	660
PvuII	CAGCTG	1 cut(s)	784
RsaI	GTAC	3 cut(s)	106, 334, 576
RsaNI	GTAC	3 cut(s)	105, 333, 575
SaqAI	TTAA	1 cut(s)	483
SatI	GCNGC	1 cut(s)	894
Sau3AI	GATC	8 cut(s)	34, 424, 457, 631, 724, 874, 958, 962
Sau96I	GGNCC	1 cut(s)	685
ScaI	AGTACT	1 cut(s)	106
SchI	GAGTC	1 cut(s)	799
ScrFI	CCNGG	3 cut(s)	125, 689, 941
SfaNI	GCATC	1 cut(s)	346
SfcI	CTRYAG	2 cut(s)	237, 656
SinI	GGWCC	1 cut(s)	685
SmlI	CTYRAG	1 cut(s)	201
SmoI	CTYRAG	1 cut(s)	201
Sse9I	AATT	7 cut(s)	94, 288, 364, 435, 480, 602, 771
SsiI	CCGC	1 cut(s)	893
StyD4I	CCNGG	3 cut(s)	123, 687, 939
StyI	CCWWGG	2 cut(s)	428, 751
TaaI	ACNGT	2 cut(s)	109, 704
TaiI	ACGT	2 cut(s)	45, 977
TaqI	TCGA	3 cut(s)	49, 86, 961
TasI	AATT	7 cut(s)	94, 288, 364, 435, 480, 602, 771
TatI	WGTACW	1 cut(s)	104
TauI	GCSGC	1 cut(s)	896
TfiI	GAWTC	3 cut(s)	524, 559, 902
Tru1I	TTAA	1 cut(s)	483
Tru9I	TTAA	1 cut(s)	483
TscAI	CASTG	1 cut(s)	467
TseFI	GTSAC	2 cut(s)	791, 880
Tsp45I	GTSAC	2 cut(s)	791, 880
TspDTI	ATGAA	2 cut(s)	537, 633
TspRI	CASTG	1 cut(s)	467
Van91I	CCANNNNNTGG	1 cut(s)	67
VpaK11BI	GGWCC	1 cut(s)	685
VspI	ATTAAT	1 cut(s)	483
XceI	RCATGY	1 cut(s)	951
XmnI	GAANNNNTTC	1 cut(s)	348
ZrmI	AGTACT	1 cut(s)	106

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.