Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001502.1

Orthogroup ID

OG0005498

Physical Location & Seq

Genomic Coordinates Forward (+)

54289 .. 58126

Gene Structure 3838 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001502.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1197 bp

ctgcccgttcatcccaaaggttatttcatcctgaaagatcctgactttgatttgaaaggtttgcttgatcaggtggaatgttatacaagaacatggcaaattggaaccttgatcaggatgtttcaagtagagtgtgtaaacgaaggttatgttgagccttgttgtgtggagaacgatgaggttttagctcgtgcgttgcaagaagagctatctagacttgcaaaggaagaggccgcgggagtttctagttatggagatgcgcctttgcaagcgtcgattcttgcacaggattggctcggtccttcaagcagacacaatggttctgggcttgaaaatgttcaggatgcagtgaatgattttggcaggatgatggacaacaatgattatagaaatcaggaaaatgagggggatggtcctaggagaaatggaaatggggaagcatatgaaaacagtgatggagagcactcagtggatggggaagacttgttgcatccgtgggatataacagatgagtatgctcttgatggtgaagtagggagaagattgaatcagatggttcctgttcctcatattcctaaaacgaatgagaaaatacccacagttgatgaagagatatcagatcatcagaggcttattgaaagactgaagttgtatgagttggtggagtgtaagatcccgggagatgggaactgtcagtttcgcgctttatcagatcaactatatcgttcttctgaataccatggccgtgtaagagatcaaattattcaacagctcaagaatcaccccgaaatatatgatggttacgttccgatgggttatgttgattacataaagaaaatgagcaagagtggtgaatggggcgaccatgtcacgttgcaggctgctgcagattcgtatggtgtcaagatagttgttatcacttctttcaaggatacatgctatattgagatccttccacatgcttcaaaatctagtagagttatctgcttgagcttttgggctgaggtgcactacaattctatctatcctgaaggagaacttcctccgcccagtttaaagaaaaagaagcattggaggtttcaatttgtgttggcattttcataccttcggctcccaggatcagaggccgaaaactgttgcatgttcaaccttcagaattggccttggcatggttcccttgcttcctcactgctttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

OTU

Protein Analysis

398

Amino Acids

45.31

Weight (kDa)

4.96

Isoelectric Point (pI)

37.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005498)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04250 AT5G04250
fragaria_vesca	FvH4_7g18921 FvH4_7g18921 FvH4_7g18921 FvH4_7g18921 FvH4_7g18921 FvH4_7g18921
malus_domestica	MD01G1105100.v1.1 MD07G1171600.v1.1
prunus_persica	Prupe.2G210400_v2.0.a1 Prupe.2G210400_v2.0.a1
pyrus_communis	pycom01g13160 pycom07g16570
rosa_chinensis	RchiOBHm_Chr1g0362861
rosa_laevigata	RLG00000027616
rosa_multiflora	Rmu_co8397651.1_g000001 Rmu_sc0001502.1_g000014
rosa_roxburghii	Rroxscaffold_4G00293700
rosa_rugosa	Rorug01G0302000.1 Rorug01G0302100 Rorug01G0302100 Rorug01G0302100 Rorug01G0302100
rosa_samantha	Rh1AG310900 Rh1BG274000 Rh1CG291200 Rh1DG304800
rosa_wichuraiana	Rw1G027560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	236, 702
AciI	CCGC	3 cut(s)	234, 236, 1046
AclWI	GGATC	4 cut(s)	32, 667, 943, 1126
AcoI	YGGCCR	1 cut(s)	742
AcuI	CTGAAG	3 cut(s)	665, 1050, 1136
AdeI	CACNNNGTG	1 cut(s)	469
AfiI	CCNNNNNNNGG	3 cut(s)	114, 683, 1169
AjnI	CCWGG	1 cut(s)	1114
AjuI	GAANNNNNNNTTGG	2 cut(s)	8, 40
AluBI	AGCT	4 cut(s)	188, 208, 772, 993
AluI	AGCT	4 cut(s)	188, 208, 772, 993
Alw21I	GWGCWC	2 cut(s)	465, 1011
Alw44I	GTGCAC	1 cut(s)	1007
AlwI	GGATC	4 cut(s)	32, 667, 943, 1126
Ama87I	CYCGRG	1 cut(s)	676
AoxI	GGCC	4 cut(s)	231, 742, 1125, 1160
ApaLI	GTGCAC	1 cut(s)	1007
ApeKI	GCWGC	2 cut(s)	881, 884
Asp700I	GAANNNNTTC	1 cut(s)	336
AspA2I	CCTAGG	1 cut(s)	416
AspLEI	GCGC	2 cut(s)	262, 704
AspS9I	GGNCC	2 cut(s)	299, 413
AsuC2I	CCSGG	2 cut(s)	677, 678
AsuHPI	GGTGA	3 cut(s)	539, 773, 863
AvaI	CYCGRG	1 cut(s)	676
AvaII	GGWCC	2 cut(s)	299, 413
AvrII	CCTAGG	1 cut(s)	416
BaeGI	GKGCMC	1 cut(s)	1011
BauI	CACGAG	1 cut(s)	189
BbsI	GAAGAC	1 cut(s)	486
Bbv12I	GWGCWC	2 cut(s)	465, 1011
BbvCI	CCTCAGC	1 cut(s)	1002
BbvI	GCAGC	2 cut(s)	868, 871
BccI	CCATC	9 cut(s)	364, 404, 449, 467, 518, 547, 677, 791, 805
BceAI	ACGGC	1 cut(s)	729
BciT130I	CCWGG	1 cut(s)	1116
BciVI	GTATCC	1 cut(s)	925
BclI	TGATCA	2 cut(s)	67, 111
BcnI	CCSGG	2 cut(s)	677, 678
BfaI	CTAG	4 cut(s)	213, 246, 417, 972
BfmI	CTRYAG	1 cut(s)	885
BfuI	GTATCC	1 cut(s)	925
BisI	GCNGC	3 cut(s)	234, 882, 885
BlnI	CCTAGG	1 cut(s)	416
BlsI	GCNGC	3 cut(s)	235, 883, 886
Bme1390I	CCNGG	3 cut(s)	677, 678, 1116
Bme18I	GGWCC	2 cut(s)	299, 413
BmeT110I	CYCGRG	1 cut(s)	676
BmgT120I	GGNCC	2 cut(s)	299, 413
BmiI	GGNNCC	4 cut(s)	106, 558, 1112, 1174
BmrFI	CCNGG	3 cut(s)	677, 678, 1116
BmrI	ACTGGG	1 cut(s)	1044
BmsI	GCATC	3 cut(s)	247, 334, 499
BmuI	ACTGGG	1 cut(s)	1044
BpiI	GAAGAC	1 cut(s)	486
Bpu10I	CCTNAGC	1 cut(s)	1002
BpuEI	CTTGAG	2 cut(s)	758, 1009
BpuMI	CCSGG	2 cut(s)	677, 678
BsaJI	CCNNGG	7 cut(s)	234, 416, 494, 676, 739, 1114, 1163
Bsc4I	CCNNNNNNNGG	3 cut(s)	114, 683, 1169
Bse1I	ACTGG	1 cut(s)	1050
BseBI	CCWGG	1 cut(s)	1116
BseDI	CCNNGG	7 cut(s)	234, 416, 494, 676, 739, 1114, 1163
BseGI	GGATG	8 cut(s)	10, 27, 123, 349, 372, 415, 478, 490
BseLI	CCNNNNNNNGG	3 cut(s)	114, 683, 1169
BseMII	CTCAG	2 cut(s)	480, 993
BseNI	ACTGG	1 cut(s)	1050
BseSI	GKGCMC	1 cut(s)	1011
BseXI	GCAGC	2 cut(s)	868, 871
Bsh1236I	CGCG	2 cut(s)	236, 702
BshFI	GGCC	4 cut(s)	233, 744, 1127, 1162
BsiHKAI	GWGCWC	2 cut(s)	465, 1011
BsiHKCI	CYCGRG	1 cut(s)	676
BsiSI	CCGG	1 cut(s)	677
BslI	CCNNNNNNNGG	3 cut(s)	114, 683, 1169
BsnI	GGCC	4 cut(s)	233, 744, 1127, 1162
BsoBI	CYCGRG	1 cut(s)	676
Bsp1286I	GDGCHC	2 cut(s)	465, 1011
Bsp143I	GATC	9 cut(s)	37, 67, 111, 619, 672, 712, 754, 948, 1118
Bsp19I	CCATGG	1 cut(s)	739
BspACI	CCGC	3 cut(s)	234, 236, 1046
BspANI	GGCC	4 cut(s)	233, 744, 1127, 1162
BspCNI	CTCAG	2 cut(s)	479, 994
BspFNI	CGCG	2 cut(s)	236, 702
BspLI	GGNNCC	4 cut(s)	106, 558, 1112, 1174
BspMAI	CTGCAG	1 cut(s)	889
BspPI	GGATC	4 cut(s)	32, 667, 943, 1126
BspQI	GCTCTTC	1 cut(s)	198
BsrI	ACTGG	1 cut(s)	1050
BssECI	CCNNGG	7 cut(s)	234, 416, 494, 676, 739, 1114, 1163
BssMI	GATC	9 cut(s)	37, 67, 111, 619, 672, 712, 754, 948, 1118
BssSI	CACGAG	1 cut(s)	189
BssT1I	CCWWGG	3 cut(s)	416, 739, 1163
Bst2BI	CACGAG	1 cut(s)	189
Bst2UI	CCWGG	1 cut(s)	1116
Bst4CI	ACNGT	4 cut(s)	452, 601, 692, 1136
Bst6I	CTCTTC	3 cut(s)	198, 222, 603
BstC8I	GCNNGC	2 cut(s)	270, 879
BstDEI	CTNAG	2 cut(s)	466, 1002
BstDSI	CCRYGG	3 cut(s)	234, 494, 739
BstENI	CCTNNNNNAGG	1 cut(s)	112
BstF5I	GGATG	8 cut(s)	10, 27, 123, 349, 372, 415, 478, 490
BstFNI	CGCG	2 cut(s)	236, 702
BstHHI	GCGC	2 cut(s)	262, 704
BstKTI	GATC	9 cut(s)	40, 70, 114, 622, 675, 715, 757, 951, 1121
BstMBI	GATC	9 cut(s)	37, 67, 111, 619, 672, 712, 754, 948, 1118
BstMWI	GCNNNNNNNGC	1 cut(s)	205
BstNI	CCWGG	1 cut(s)	1116
BstNSI	RCATGY	3 cut(s)	939, 962, 1144
BstSCI	CCNGG	3 cut(s)	675, 676, 1114
BstSFI	CTRYAG	1 cut(s)	885
BstSLI	GKGCMC	1 cut(s)	1011
BstUI	CGCG	2 cut(s)	236, 702
BstV1I	GCAGC	2 cut(s)	868, 871
BstV2I	GAAGAC	1 cut(s)	486
BstX2I	RGATCY	3 cut(s)	37, 672, 948
BstYI	RGATCY	3 cut(s)	37, 672, 948
BsuI	GTATCC	1 cut(s)	925
BsuRI	GGCC	4 cut(s)	233, 744, 1127, 1162
BtgI	CCRYGG	3 cut(s)	234, 494, 739
BtsCI	GGATG	8 cut(s)	10, 27, 123, 349, 372, 415, 478, 490
BtsI	GCAGTG	2 cut(s)	354, 1187
BtsIMutI	CAGTG	4 cut(s)	354, 457, 474, 1187
Cac8I	GCNNGC	2 cut(s)	270, 879
CfoI	GCGC	2 cut(s)	262, 704
Cfr13I	GGNCC	2 cut(s)	299, 413
Cfr42I	CCGCGG	1 cut(s)	237
Cfr9I	CCCGGG	1 cut(s)	676
CseI	GACGC	1 cut(s)	261
CviAII	CATG	7 cut(s)	93, 740, 866, 936, 959, 1141, 1169
DdeI	CTNAG	2 cut(s)	466, 1002
DpnI	GATC	9 cut(s)	39, 69, 113, 621, 674, 714, 756, 950, 1120
DpnII	GATC	9 cut(s)	37, 67, 111, 619, 672, 712, 754, 948, 1118
DraI	TTTAAA	1 cut(s)	1056
DraIII	CACNNNGTG	1 cut(s)	469
EaeI	YGGCCR	1 cut(s)	742
Eam1104I	CTCTTC	3 cut(s)	198, 222, 603
EarI	CTCTTC	3 cut(s)	198, 222, 603
EciI	GGCGGA	1 cut(s)	1035
Eco130I	CCWWGG	3 cut(s)	416, 739, 1163
Eco32I	GATATC	1 cut(s)	615
Eco47I	GGWCC	2 cut(s)	299, 413
Eco57I	CTGAAG	3 cut(s)	665, 1050, 1136
Eco88I	CYCGRG	1 cut(s)	676
EcoNI	CCTNNNNNAGG	1 cut(s)	112
EcoRII	CCWGG	1 cut(s)	1114
EcoRV	GATATC	1 cut(s)	615
EcoT14I	CCWWGG	3 cut(s)	416, 739, 1163
ErhI	CCWWGG	3 cut(s)	416, 739, 1163
FaeI	CATG	7 cut(s)	96, 743, 869, 939, 962, 1144, 1172
FalI	AAGNNNNNCTT	4 cut(s)	48, 80, 1023, 1055
FatI	CATG	7 cut(s)	92, 739, 865, 935, 958, 1140, 1168
FauI	CCCGC	1 cut(s)	229
FauNDI	CATATG	1 cut(s)	442
FbaI	TGATCA	2 cut(s)	67, 111
Fnu4HI	GCNGC	3 cut(s)	234, 882, 885
FokI	GGATG	7 cut(s)	14, 130, 356, 379, 422, 477, 485
Fsp4HI	GCNGC	3 cut(s)	234, 882, 885
FspBI	CTAG	4 cut(s)	213, 246, 417, 972
GlaI	GCGC	2 cut(s)	261, 703
GluI	GCNGC	3 cut(s)	234, 882, 885
HaeIII	GGCC	4 cut(s)	233, 744, 1127, 1162
HapII	CCGG	1 cut(s)	677
HgaI	GACGC	1 cut(s)	261
HhaI	GCGC	2 cut(s)	262, 704
Hin1II	CATG	7 cut(s)	96, 743, 869, 939, 962, 1144, 1172
Hin6I	GCGC	2 cut(s)	260, 702
HinP1I	GCGC	2 cut(s)	260, 702
HinfI	GANTC	4 cut(s)	277, 547, 778, 890
HpaII	CCGG	1 cut(s)	677
HphI	GGTGA	3 cut(s)	539, 773, 863
Hpy166II	GTNNAC	2 cut(s)	139, 1009
Hpy188I	TCNGA	8 cut(s)	552, 619, 627, 712, 733, 810, 1123, 1155
Hpy8I	GTNNAC	2 cut(s)	139, 1009
Hpy99I	CGWCG	1 cut(s)	277
HpyAV	CCTTC	6 cut(s)	137, 312, 962, 1025, 1115, 1160
HpyCH4III	ACNGT	4 cut(s)	452, 601, 692, 1136
HpyCH4IV	ACGT	2 cut(s)	804, 872
HpyF10VI	GCNNNNNNNGC	1 cut(s)	205
HpyF3I	CTNAG	2 cut(s)	466, 1002
HpySE526I	ACGT	2 cut(s)	804, 872
Hsp92II	CATG	7 cut(s)	96, 743, 869, 939, 962, 1144, 1172
HspAI	GCGC	2 cut(s)	260, 702
Ksp22I	TGATCA	2 cut(s)	67, 111
KspI	CCGCGG	1 cut(s)	237
Kzo9I	GATC	9 cut(s)	37, 67, 111, 619, 672, 712, 754, 948, 1118
LguI	GCTCTTC	1 cut(s)	198
LmnI	GCTCC	1 cut(s)	1116
Lsp1109I	GCAGC	2 cut(s)	868, 871
LweI	GCATC	3 cut(s)	247, 334, 499
MaeI	CTAG	4 cut(s)	213, 246, 417, 972
MaeII	ACGT	2 cut(s)	804, 872
MaeIII	GTNAC	2 cut(s)	800, 868
MalI	GATC	9 cut(s)	39, 69, 113, 621, 674, 714, 756, 950, 1120
MboI	GATC	9 cut(s)	37, 67, 111, 619, 672, 712, 754, 948, 1118
MboII	GAAGA	6 cut(s)	215, 239, 491, 552, 620, 720
MflI	RGATCY	3 cut(s)	37, 672, 948
MhlI	GDGCHC	2 cut(s)	465, 1011
MluCI	AATT	5 cut(s)	99, 759, 1015, 1082, 1156
MroXI	GAANNNNTTC	1 cut(s)	336
MseI	TTAA	1 cut(s)	1055
MslI	CAYNNNNRTG	1 cut(s)	744
MspA1I	CMGCKG	1 cut(s)	236
MspI	CCGG	1 cut(s)	677
MspR9I	CCNGG	3 cut(s)	677, 678, 1116
MvaI	CCWGG	1 cut(s)	1116
MvnI	CGCG	2 cut(s)	236, 702
MwoI	GCNNNNNNNGC	1 cut(s)	205
NciI	CCSGG	2 cut(s)	677, 678
NcoI	CCATGG	1 cut(s)	739
NdeI	CATATG	1 cut(s)	442
NdeII	GATC	9 cut(s)	37, 67, 111, 619, 672, 712, 754, 948, 1118
NlaIII	CATG	7 cut(s)	96, 743, 869, 939, 962, 1144, 1172
NlaIV	GGNNCC	4 cut(s)	106, 558, 1112, 1174
NmuCI	GTSAC	1 cut(s)	868
NspI	RCATGY	3 cut(s)	939, 962, 1144
PciSI	GCTCTTC	1 cut(s)	198
PdmI	GAANNNNTTC	1 cut(s)	336
PfeI	GAWTC	4 cut(s)	277, 547, 778, 890
PflFI	GACNNNGTC	1 cut(s)	866
PkrI	GCNGC	3 cut(s)	235, 883, 886
Psp6I	CCWGG	1 cut(s)	1114
PspGI	CCWGG	1 cut(s)	1114
PspN4I	GGNNCC	4 cut(s)	106, 558, 1112, 1174
PspPI	GGNCC	2 cut(s)	299, 413
PstI	CTGCAG	1 cut(s)	889
PsuI	RGATCY	3 cut(s)	37, 672, 948
PsyI	GACNNNGTC	1 cut(s)	866
RseI	CAYNNNNRTG	1 cut(s)	744
SacII	CCGCGG	1 cut(s)	237
SapI	GCTCTTC	1 cut(s)	198
SaqAI	TTAA	1 cut(s)	1055
SatI	GCNGC	3 cut(s)	234, 882, 885
Sau3AI	GATC	9 cut(s)	37, 67, 111, 619, 672, 712, 754, 948, 1118
Sau96I	GGNCC	2 cut(s)	299, 413
ScrFI	CCNGG	3 cut(s)	677, 678, 1116
SduI	GDGCHC	2 cut(s)	465, 1011
SfaNI	GCATC	3 cut(s)	247, 334, 499
SfcI	CTRYAG	1 cut(s)	885
Sfr303I	CCGCGG	1 cut(s)	237
SgrBI	CCGCGG	1 cut(s)	237
SinI	GGWCC	2 cut(s)	299, 413
SmaI	CCCGGG	1 cut(s)	678
SmiMI	CAYNNNNRTG	1 cut(s)	744
SmlI	CTYRAG	2 cut(s)	773, 988
SmoI	CTYRAG	2 cut(s)	773, 988
Sse9I	AATT	5 cut(s)	99, 759, 1015, 1082, 1156
SsiI	CCGC	3 cut(s)	234, 236, 1046
SspMI	CTAG	4 cut(s)	213, 246, 417, 972
StyD4I	CCNGG	3 cut(s)	675, 676, 1114
StyI	CCWWGG	3 cut(s)	416, 739, 1163
TaaI	ACNGT	4 cut(s)	452, 601, 692, 1136
TaiI	ACGT	2 cut(s)	807, 875
TaqI	TCGA	1 cut(s)	275
TaqII	GACCGA	1 cut(s)	287
TasI	AATT	5 cut(s)	99, 759, 1015, 1082, 1156
TauI	GCSGC	1 cut(s)	236
TfiI	GAWTC	4 cut(s)	277, 547, 778, 890
Tru1I	TTAA	1 cut(s)	1055
Tru9I	TTAA	1 cut(s)	1055
TscAI	CASTG	4 cut(s)	354, 457, 474, 1194
TseFI	GTSAC	1 cut(s)	868
TseI	GCWGC	2 cut(s)	881, 884
Tsp45I	GTSAC	1 cut(s)	868
TspDTI	ATGAA	4 cut(s)	16, 459, 621, 1089
TspGWI	ACGGA	1 cut(s)	483
TspMI	CCCGGG	1 cut(s)	676
TspRI	CASTG	4 cut(s)	354, 457, 474, 1194
Tth111I	GACNNNGTC	1 cut(s)	866
VneI	GTGCAC	1 cut(s)	1007
VpaK11BI	GGWCC	2 cut(s)	299, 413
XagI	CCTNNNNNAGG	1 cut(s)	112
XbaI	TCTAGA	1 cut(s)	212
XceI	RCATGY	3 cut(s)	939, 962, 1144
XmaI	CCCGGG	1 cut(s)	676
XmaJI	CCTAGG	1 cut(s)	416
XmnI	GAANNNNTTC	1 cut(s)	336
XspI	CTAG	4 cut(s)	213, 246, 417, 972

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.