MD07G1171600.v1.1

OTU domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0005498
Physical Location & Seq
Reverse (-)
24776185 .. 24780410
4226 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1171600.v1.1.491

Sequence Viewer

Length: 1236 bp
ATGCGCAATATATTTGTTTCTACTTTTGGATTTTACTGTTGGTGTTCTGTTTATACCCTTTTCGAGTTTTATTTTCGGTTATTGATATTTAATGGGGTTGCTAGGTACTTGAGGAGCAGAGGTAGTGTTGCTATACAGATGTTACACAAGCAGATGACAACATATAATCTTGATCCCGACGTGGTTCGATGGGGTCTCCATCTCTTGGATGTTTGCACGATGTCGAATGATAATTCTCATAGTACTGTTACGCAATACGACCAGGATTTTAGTCAAGTAGAGTGTGTTAGAGAAGGTTATGTTGAGCCTTGTAATGTGGAGAATGATGAGATTATAGCTCAAGCGTATCAAGAAGAGTTGTCAAGGCTCACTTCTGTAGAAAAGTCAGGAGGTTCTGGTTATGGAGATGGGCAGTTGGAAGCGTCAATTCTTGCGCAGGATTGGCTTGGTCCTTCAAATAGGCACAATGGTACTGGGCTTGAAAATGTTCGGGATGCAGTAAATTACTTTGGCAGAAATATGGATACCGATGATTATAGAAATAAGCAACATGAGGCGCATGATCCAAGGAGAATTGGAAACGAGGTAGCAAATGATCACTGCGAAGGAGAATACTCAATTAATGGGGAAGACTTTTTGCACTTACTGGACATAACAGATGAATCTTCGCTTGATGGTGAAGTAGGGAGAAGATTGAATCAGATGGCTTCTGTACCTCATATTCCTAAAACGAATGAGAAATTACCCTCAGAGGATGAAGAGATATCAGATCATCAGAGGCTTTTAGAAAGACTGCAGTTGTATGATTTGGTGGAGTGTAAGGTCCAGGGAGATGGTAACTGTCAGTTTCGTGCTTTATCTGATCAACTATATCGTTCTCCTGAATACCATGGCGTTGTAAGAGACCAAATTATTCAACAGCTGAAGAGTCACCCCGAAATGTACGAGGGTTATGTTCCTATGGGTTATGCTGATTATCTAAAGAAGATGAGCAAGAATGGTGAATGGGGTGATCATGTCACATTGCAGGCGGCCGCAGATTCGTATGGTGTAAAGATATTTGTAATAACTTCCTTCCGGGATACATGTTACATTGAGATCCTTCCACACGTTGAAAAATCCAACAGAGTTATCTGCTTGAGCTTTTGGGCTGAGGTGCATTACAATTCAATTTATCCCGAAGGAGAACTTCCTCCCCCGAGCTTAAAGAAAAAGAAGAAATGGTGGAAACTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
OTU

Protein Analysis

412

Amino Acids

47.39

Weight (kDa)

5.13

Isoelectric Point (pI)

42.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
OTU PF02338 276 - 364 2.2e-12 OTU-like cysteine protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 2 cut(s) 5, 435
AccB7I CCANNNNNTGG 1 cut(s) 205
AciI CCGC 2 cut(s) 1031, 1035
AclWI GGATC 3 cut(s) 167, 557, 1093
AcoI YGGCCR 1 cut(s) 1032
AcuI CTGAAG 1 cut(s) 944
AfaI GTAC 5 cut(s) 107, 244, 472, 714, 944
AfiI CCNNNNNNNGG 1 cut(s) 205
AflIII ACRYGT 2 cut(s) 1085, 1108
AgsI TTSAA 6 cut(s) 456, 482, 697, 917, 1115, 1170
AjiI CACGTC 1 cut(s) 181
AjnI CCWGG 2 cut(s) 261, 825
AluBI AGCT 4 cut(s) 338, 922, 1143, 1203
AluI AGCT 4 cut(s) 338, 922, 1143, 1203
Alw26I GTCTC 2 cut(s) 200, 897
AlwI GGATC 3 cut(s) 167, 557, 1093
Ama87I CYCGRG 1 cut(s) 1198
AoxI GGCC 1 cut(s) 1032
AseI ATTAAT 1 cut(s) 621
Asp700I GAANNNNTTC 1 cut(s) 486
AspLEI GCGC 3 cut(s) 6, 436, 559
AspS9I GGNCC 2 cut(s) 449, 823
AsuC2I CCSGG 1 cut(s) 1079
AsuHPI GGTGA 4 cut(s) 689, 923, 1013, 1022
AvaI CYCGRG 1 cut(s) 1198
AvaII GGWCC 2 cut(s) 449, 823
BbsI GAAGAC 1 cut(s) 636
BbvCI CCTCAGC 1 cut(s) 1152
BccI CCATC 6 cut(s) 183, 207, 401, 668, 697, 827
BciT130I CCWGG 2 cut(s) 263, 827
BciVI GTATCC 2 cut(s) 517, 1075
BclI TGATCA 3 cut(s) 595, 862, 1012
BcnI CCSGG 1 cut(s) 1079
BcoDI GTCTC 2 cut(s) 200, 897
BfaI CTAG 1 cut(s) 102
BfmI CTRYAG 2 cut(s) 375, 794
BfuI GTATCC 2 cut(s) 517, 1075
BisI GCNGC 2 cut(s) 1032, 1035
BlsI GCNGC 2 cut(s) 1033, 1036
BmcAI AGTACT 1 cut(s) 244
Bme1390I CCNGG 3 cut(s) 263, 827, 1079
Bme18I GGWCC 2 cut(s) 449, 823
BmeT110I CYCGRG 1 cut(s) 1198
BmgBI CACGTC 1 cut(s) 181
BmgT120I GGNCC 2 cut(s) 449, 823
BmrFI CCNGG 3 cut(s) 263, 827, 1079
BmrI ACTGGG 1 cut(s) 483
BmsI GCATC 1 cut(s) 484
BmuI ACTGGG 1 cut(s) 483
BpiI GAAGAC 1 cut(s) 636
Bpu10I CCTNAGC 1 cut(s) 1152
BpuEI CTTGAG 3 cut(s) 130, 324, 1159
BpuMI CCSGG 1 cut(s) 1079
BsaI GGTCTC 2 cut(s) 200, 897
BsaJI CCNNGG 3 cut(s) 566, 826, 889
BsaXI ACNNNNNCTCC 2 cut(s) 106, 136
Bsc4I CCNNNNNNNGG 1 cut(s) 205
Bse1I ACTGG 2 cut(s) 478, 651
Bse3DI GCAATG 1 cut(s) 1022
BseBI CCWGG 2 cut(s) 263, 827
BseDI CCNNGG 3 cut(s) 566, 826, 889
BseGI GGATG 3 cut(s) 214, 499, 760
BseLI CCNNNNNNNGG 1 cut(s) 205
BseMI GCAATG 1 cut(s) 1022
BseMII CTCAG 2 cut(s) 762, 1143
BseNI ACTGG 2 cut(s) 478, 651
BseRI GAGGAG 1 cut(s) 127
BseX3I CGGCCG 1 cut(s) 1032
Bsh1285I CGRYCG 1 cut(s) 1035
BshFI GGCC 1 cut(s) 1034
BsiEI CGRYCG 1 cut(s) 1035
BsiHKCI CYCGRG 1 cut(s) 1198
BsiSI CCGG 1 cut(s) 1078
BslI CCNNNNNNNGG 1 cut(s) 205
BsmAI GTCTC 2 cut(s) 200, 897
BsnI GGCC 1 cut(s) 1034
Bso31I GGTCTC 2 cut(s) 200, 897
BsoBI CYCGRG 1 cut(s) 1198
Bsp143I GATC 7 cut(s) 172, 562, 595, 769, 862, 1012, 1098
Bsp19I CCATGG 1 cut(s) 889
BspACI CCGC 2 cut(s) 1031, 1035
BspANI GGCC 1 cut(s) 1034
BspCNI CTCAG 2 cut(s) 761, 1144
BspMAI CTGCAG 1 cut(s) 798
BspPI GGATC 3 cut(s) 167, 557, 1093
BspTNI GGTCTC 2 cut(s) 200, 897
BsrDI GCAATG 1 cut(s) 1022
BsrI ACTGG 2 cut(s) 478, 651
BssECI CCNNGG 3 cut(s) 566, 826, 889
BssMI GATC 7 cut(s) 172, 562, 595, 769, 862, 1012, 1098
BssT1I CCWWGG 2 cut(s) 566, 889
Bst2UI CCWGG 2 cut(s) 263, 827
Bst4CI ACNGT 3 cut(s) 38, 247, 842
Bst6I CTCTTC 3 cut(s) 348, 753, 920
BstC8I GCNNGC 1 cut(s) 1029
BstDEI CTNAG 2 cut(s) 748, 1152
BstDSI CCRYGG 1 cut(s) 889
BstF5I GGATG 3 cut(s) 214, 499, 760
BstHHI GCGC 3 cut(s) 6, 436, 559
BstKTI GATC 7 cut(s) 175, 565, 598, 772, 865, 1015, 1101
BstMAI GTCTC 2 cut(s) 200, 897
BstMBI GATC 7 cut(s) 172, 562, 595, 769, 862, 1012, 1098
BstMCI CGRYCG 1 cut(s) 1035
BstMWI GCNNNNNNNGC 1 cut(s) 442
BstNI CCWGG 2 cut(s) 263, 827
BstNSI RCATGY 1 cut(s) 1089
BstSCI CCNGG 3 cut(s) 261, 825, 1077
BstSFI CTRYAG 2 cut(s) 375, 794
BstV2I GAAGAC 1 cut(s) 636
BstX2I RGATCY 1 cut(s) 1098
BstXI CCANNNNNNTGG 1 cut(s) 833
BstYI RGATCY 1 cut(s) 1098
BstZI CGGCCG 1 cut(s) 1032
BsuI GTATCC 2 cut(s) 517, 1075
BsuRI GGCC 1 cut(s) 1034
BtgI CCRYGG 1 cut(s) 889
BtrI CACGTC 1 cut(s) 181
BtsCI GGATG 3 cut(s) 214, 499, 760
BtsI GCAGTG 1 cut(s) 598
BtsIMutI CAGTG 1 cut(s) 598
Cac8I GCNNGC 1 cut(s) 1029
CciNI GCGGCCGC 1 cut(s) 1032
CfoI GCGC 3 cut(s) 6, 436, 559
Cfr13I GGNCC 2 cut(s) 449, 823
CseI GACGC 1 cut(s) 411
Csp6I GTAC 5 cut(s) 106, 243, 471, 713, 943
CviAII CATG 5 cut(s) 551, 560, 890, 1016, 1086
CviQI GTAC 5 cut(s) 106, 243, 471, 713, 943
DdeI CTNAG 2 cut(s) 748, 1152
DpnI GATC 7 cut(s) 174, 564, 597, 771, 864, 1014, 1100
DpnII GATC 7 cut(s) 172, 562, 595, 769, 862, 1012, 1098
EaeI YGGCCR 1 cut(s) 1032
EagI CGGCCG 1 cut(s) 1032
Eam1104I CTCTTC 3 cut(s) 348, 753, 920
EarI CTCTTC 3 cut(s) 348, 753, 920
EclXI CGGCCG 1 cut(s) 1032
Eco130I CCWWGG 2 cut(s) 566, 889
Eco31I GGTCTC 2 cut(s) 200, 897
Eco32I GATATC 1 cut(s) 765
Eco47I GGWCC 2 cut(s) 449, 823
Eco52I CGGCCG 1 cut(s) 1032
Eco57I CTGAAG 1 cut(s) 944
Eco88I CYCGRG 1 cut(s) 1198
EcoRII CCWGG 2 cut(s) 261, 825
EcoRV GATATC 1 cut(s) 765
EcoT14I CCWWGG 2 cut(s) 566, 889
ErhI CCWWGG 2 cut(s) 566, 889
FaeI CATG 5 cut(s) 554, 563, 893, 1019, 1089
FalI AAGNNNNNCTT 4 cut(s) 355, 387, 1173, 1205
FatI CATG 5 cut(s) 550, 559, 889, 1015, 1085
FbaI TGATCA 3 cut(s) 595, 862, 1012
Fnu4HI GCNGC 2 cut(s) 1032, 1035
FokI GGATG 3 cut(s) 221, 506, 767
Fsp4HI GCNGC 2 cut(s) 1032, 1035
FspBI CTAG 1 cut(s) 102
FspI TGCGCA 2 cut(s) 5, 435
GlaI GCGC 3 cut(s) 5, 435, 558
GluI GCNGC 2 cut(s) 1032, 1035
HaeIII GGCC 1 cut(s) 1034
HapII CCGG 1 cut(s) 1078
HgaI GACGC 1 cut(s) 411
HhaI GCGC 3 cut(s) 6, 436, 559
Hin1II CATG 5 cut(s) 554, 563, 893, 1019, 1089
Hin6I GCGC 3 cut(s) 4, 434, 557
HinP1I GCGC 3 cut(s) 4, 434, 557
HinfI GANTC 4 cut(s) 662, 697, 928, 1040
HpaII CCGG 1 cut(s) 1078
HphI GGTGA 4 cut(s) 689, 923, 1013, 1022
Hpy188I TCNGA 5 cut(s) 702, 751, 769, 777, 862
Hpy188III TCNNGA 7 cut(s) 170, 176, 350, 387, 491, 881, 1178
Hpy99I CGWCG 1 cut(s) 182
HpyAV CCTTC 6 cut(s) 287, 462, 599, 1084, 1112, 1175
HpyCH4III ACNGT 3 cut(s) 38, 247, 842
HpyCH4IV ACGT 2 cut(s) 180, 1110
HpyCH4V TGCA 6 cut(s) 216, 497, 640, 796, 1027, 1159
HpyF10VI GCNNNNNNNGC 1 cut(s) 442
HpyF3I CTNAG 2 cut(s) 748, 1152
HpySE526I ACGT 2 cut(s) 180, 1110
Hsp92II CATG 5 cut(s) 554, 563, 893, 1019, 1089
HspAI GCGC 3 cut(s) 4, 434, 557
Ksp22I TGATCA 3 cut(s) 595, 862, 1012
Kzo9I GATC 7 cut(s) 172, 562, 595, 769, 862, 1012, 1098
LmnI GCTCC 1 cut(s) 114
LweI GCATC 1 cut(s) 484
MaeI CTAG 1 cut(s) 102
MaeII ACGT 2 cut(s) 180, 1110
MaeIII GTNAC 6 cut(s) 141, 247, 836, 929, 1018, 1088
MalI GATC 7 cut(s) 174, 564, 597, 771, 864, 1014, 1100
MboI GATC 7 cut(s) 172, 562, 595, 769, 862, 1012, 1098
MboII GAAGA 8 cut(s) 365, 641, 657, 702, 770, 937, 997, 1228
MflI RGATCY 1 cut(s) 1098
MluCI AATT 9 cut(s) 232, 426, 502, 573, 618, 740, 909, 1165, 1170
MlyI GAGTC 1 cut(s) 937
MmeI TCCRAC 2 cut(s) 396, 1146
MroXI GAANNNNTTC 1 cut(s) 486
MseI TTAA 3 cut(s) 90, 621, 1205
MspA1I CMGCKG 1 cut(s) 922
MspI CCGG 1 cut(s) 1078
MspR9I CCNGG 3 cut(s) 263, 827, 1079
MvaI CCWGG 2 cut(s) 263, 827
MwoI GCNNNNNNNGC 1 cut(s) 442
NciI CCSGG 1 cut(s) 1079
NcoI CCATGG 1 cut(s) 889
NdeII GATC 7 cut(s) 172, 562, 595, 769, 862, 1012, 1098
NlaIII CATG 5 cut(s) 554, 563, 893, 1019, 1089
NmuCI GTSAC 2 cut(s) 929, 1018
NotI GCGGCCGC 1 cut(s) 1032
NsbI TGCGCA 2 cut(s) 5, 435
NspI RCATGY 1 cut(s) 1089
PciI ACATGT 1 cut(s) 1085
PdmI GAANNNNTTC 1 cut(s) 486
PfeI GAWTC 3 cut(s) 662, 697, 1040
PflMI CCANNNNNTGG 1 cut(s) 205
PfoI TCCNGGA 1 cut(s) 1077
PkrI GCNGC 2 cut(s) 1033, 1036
PleI GAGTC 1 cut(s) 936
PpsI GAGTC 1 cut(s) 936
PscI ACATGT 1 cut(s) 1085
PshBI ATTAAT 1 cut(s) 621
Psp6I CCWGG 2 cut(s) 261, 825
PspGI CCWGG 2 cut(s) 261, 825
PspPI GGNCC 2 cut(s) 449, 823
PstI CTGCAG 1 cut(s) 798
PsuI RGATCY 1 cut(s) 1098
PvuII CAGCTG 1 cut(s) 922
RsaI GTAC 5 cut(s) 107, 244, 472, 714, 944
RsaNI GTAC 5 cut(s) 106, 243, 471, 713, 943
SaqAI TTAA 3 cut(s) 90, 621, 1205
SatI GCNGC 2 cut(s) 1032, 1035
Sau3AI GATC 7 cut(s) 172, 562, 595, 769, 862, 1012, 1098
Sau96I GGNCC 2 cut(s) 449, 823
ScaI AGTACT 1 cut(s) 244
SchI GAGTC 1 cut(s) 937
ScrFI CCNGG 3 cut(s) 263, 827, 1079
SfaNI GCATC 1 cut(s) 484
SfcI CTRYAG 2 cut(s) 375, 794
SinI GGWCC 2 cut(s) 449, 823
SmlI CTYRAG 3 cut(s) 109, 339, 1138
SmoI CTYRAG 3 cut(s) 109, 339, 1138
Sse9I AATT 9 cut(s) 232, 426, 502, 573, 618, 740, 909, 1165, 1170
SsiI CCGC 2 cut(s) 1031, 1035
SspMI CTAG 1 cut(s) 102
StyD4I CCNGG 3 cut(s) 261, 825, 1077
StyI CCWWGG 2 cut(s) 566, 889
TaaI ACNGT 3 cut(s) 38, 247, 842
TaiI ACGT 2 cut(s) 183, 1113
TaqI TCGA 3 cut(s) 63, 187, 224
TasI AATT 9 cut(s) 232, 426, 502, 573, 618, 740, 909, 1165, 1170
TatI WGTACW 1 cut(s) 242
TauI GCSGC 2 cut(s) 1034, 1037
TfiI GAWTC 3 cut(s) 662, 697, 1040
Tru1I TTAA 3 cut(s) 90, 621, 1205
Tru9I TTAA 3 cut(s) 90, 621, 1205
TscAI CASTG 1 cut(s) 605
TseFI GTSAC 2 cut(s) 929, 1018
Tsp45I GTSAC 2 cut(s) 929, 1018
TspDTI ATGAA 2 cut(s) 675, 771
TspRI CASTG 1 cut(s) 605
Van91I CCANNNNNTGG 1 cut(s) 205
VpaK11BI GGWCC 2 cut(s) 449, 823
VspI ATTAAT 1 cut(s) 621
XceI RCATGY 1 cut(s) 1089
XmnI GAANNNNTTC 1 cut(s) 486
XspI CTAG 1 cut(s) 102
ZrmI AGTACT 1 cut(s) 244
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.