FvH4_7g20180

No description available

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
Physical Location & Seq
Reverse (-)
16448475 .. 16451349
2875 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g20180.t1

Sequence Viewer

Length: 1554 bp
ATGTCTTTTCAAGAACAAGGCTTTCCAGATGACAGAAAGAAGCTTGATGGGTTTAGACTACTCGACCATGTGAGTCCACAAGACGCCCAACATTCAGAAACCAAATCCACGTTTAATGTCCGCAAGAGTTTGGCTTGGGACAGTGCCTTCTTCACTAGTCCAGGAGTGTTGGACCCTGAAGAGCTGCTTCAGACTACGAGTTCTGGAGCTACAGGCAATGCAATTAACCTACTTGGGAATGAGGACGAGATACTATTGCCTTCGGAGTCTTTGGAACCTGAAAGAACAAGAAAATTTGAGAGCTGTAGTGATCGAAAGAGCTTAGCTTGGGATAATGCTTTTTACACAAGCCCAGGGGTTTTGGATCCTGAGGAGTTGTCAATAGTAAACAAAGGATTCAAGAAATCCGAGTCACATCAGCTTCCTGAGATTAAAGAAGTTTGGAGGTCCACGGAGTCGAAGTCTACAATAGATAGTGGCAGTTCTCCTTTGGAAAGCCTTGAATTTGAACTTTTTGAGGACACAAGGTCATCTATGCCGAAGCCAGCTAGTCTGAAATTGAAAGGAGGAAGAGGCTTGCAAAATGTCCATCGCTCGAAGAAATATGATGCTTCATCTCAGCTTGTTGCTGGAAGTGGGAAATTTATCCCAACAGCATCTCTTAAACAACCAAAGATATTCAGTGGCTTGAATCCCTCTGCAACAGCTGCAGCCAAGAGGTCTTCTTTGGGCCTAAAACATGTCAAGACGGGATCTGCAAAGGCTGCACCTGCTGCAGGACAATGTTCAACTCTTACGAAGAAACCTTGCTCGAGGGCGTCATCAAGTATAATGCCTCATAGTTATACACCGTCCCCAAAATCATCATCCTCAGTTTCTCCAGCTTCAAATGAGACCAGTAGTGAATGTCCAATGAACTCGAGAAGCAAAGTTGATTATTCACTTGACGATCTTGCTGCCGATGGCTTCACCATCAGCAGTCCTTCAAGATTCACAAAGACAAACAAAGATGAACACGAAAGTGATCCTTGTGAAATGTTCACACCCAAATCTACTGTTTACGCATCATCTGCTACTTCTCTTGATGGATGGTCCTCAGAATCATCTATGAGTCAGAGATCTATCAGCAGGCAGATTCCTTTTGGGAGTTATACATCTCAGACCTCAGATACGGTACATTATTTTGGACATGAAAATCAGGAAACAAGTCTCACAAATCAACATATGAAGACCTCAGGTCTGCGAGTCCCATCACCAAAGAATGGCTTCTTCGATGAGGAGATTGCTTTGCTGCGAGGAAGGGGTAGCCCGTTTCATTCTGTTGTGCCAAGCATAGTGTCTCAAAATGGAGGTGCAAATCAGTATGGTAAGCGTAAACCTCCAAGAAATGTTGACGGGAAGAGGAATGTGCAGAAGGCGCTCAACAGAATGGACAAGGAAAGCACCAAAGAGAATGAAGATCCCAACACGCATTGTCCTGGAGAATGTGCATCGGTCAAGAAGATGGTGACCGGGAAAATGCATATTACTTCAAAAACCAAATTGAAAGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

518

Amino Acids

56.36

Weight (kDa)

8.82

Isoelectric Point (pI)

60.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 778
Acc36I ACCTGC 1 cut(s) 778
AccB7I CCANNNNNTGG 1 cut(s) 1262
AccI GTMKAC 1 cut(s) 464
AciI CCGC 1 cut(s) 121
AclWI GGATC 5 cut(s) 359, 372, 760, 1019, 1454
AcsI RAATTY 3 cut(s) 293, 503, 641
AcuI CTGAAG 2 cut(s) 173, 198
AcyI GRCGYC 2 cut(s) 84, 818
AfaI GTAC 1 cut(s) 1176
AfiI CCNNNNNNNGG 2 cut(s) 776, 1262
AflIII ACRYGT 1 cut(s) 739
AhdI GACNNNNNGTC 2 cut(s) 526, 1236
AhlI ACTAGT 1 cut(s) 155
AjnI CCWGG 3 cut(s) 160, 352, 1477
AleI CACNNNNGTG 1 cut(s) 1020
Alw26I GTCTC 3 cut(s) 887, 1214, 1344
AlwI GGATC 5 cut(s) 359, 372, 760, 1019, 1454
Ama87I CYCGRG 2 cut(s) 811, 919
AoxI GGCC 1 cut(s) 730
ApeKI GCWGC 7 cut(s) 184, 707, 710, 764, 773, 956, 1291
ApoI RAATTY 3 cut(s) 293, 503, 641
Asp700I GAANNNNTTC 1 cut(s) 1265
AspLEI GCGC 1 cut(s) 1420
AspS9I GGNCC 4 cut(s) 172, 447, 730, 1092
AsuC2I CCSGG 1 cut(s) 1513
AsuHPI GGTGA 3 cut(s) 961, 1245, 1519
AvaI CYCGRG 2 cut(s) 811, 919
AvaII GGWCC 3 cut(s) 172, 447, 1092
AxyI CCTNAGG 2 cut(s) 369, 1234
BamHI GGATCC 1 cut(s) 364
BbsI GAAGAC 2 cut(s) 714, 1235
BbvI GCAGC 7 cut(s) 171, 694, 722, 751, 760, 943, 1278
BccI CCATC 8 cut(s) 41, 597, 956, 980, 1079, 1083, 1258, 1498
BcgI CGANNNNNNTGC 2 cut(s) 938, 972
BciT130I CCWGG 3 cut(s) 162, 354, 1479
BcnI CCSGG 1 cut(s) 1513
BcoDI GTCTC 3 cut(s) 887, 1214, 1344
BcuI ACTAGT 1 cut(s) 155
BfaI CTAG 2 cut(s) 156, 549
BfmI CTRYAG 4 cut(s) 210, 304, 708, 774
BfoI RGCGCY 1 cut(s) 1421
BfuAI ACCTGC 1 cut(s) 778
BglII AGATCT 1 cut(s) 1118
BisI GCNGC 7 cut(s) 185, 708, 711, 765, 774, 957, 1292
BlpI GCTNAGC 1 cut(s) 322
BlsI GCNGC 7 cut(s) 186, 709, 712, 766, 775, 958, 1293
Bme1390I CCNGG 4 cut(s) 162, 354, 1479, 1513
Bme18I GGWCC 3 cut(s) 172, 447, 1092
BmeRI GACNNNNNGTC 2 cut(s) 526, 1236
BmeT110I CYCGRG 2 cut(s) 811, 919
BmgT120I GGNCC 4 cut(s) 172, 447, 730, 1092
BmiI GGNNCC 3 cut(s) 174, 276, 366
BmrFI CCNGG 4 cut(s) 162, 354, 1479, 1513
BmsI GCATC 4 cut(s) 598, 665, 1073, 1499
BpiI GAAGAC 2 cut(s) 714, 1235
BpmI CTGGAG 3 cut(s) 225, 864, 1500
Bpu1102I GCTNAGC 1 cut(s) 322
BpuMI CCSGG 1 cut(s) 1513
BsaHI GRCGYC 2 cut(s) 84, 818
BsaI GGTCTC 1 cut(s) 887
BsaJI CCNNGG 3 cut(s) 352, 353, 450
BsaXI ACNNNNNCTCC 2 cut(s) 446, 476
Bsc4I CCNNNNNNNGG 2 cut(s) 776, 1262
Bse1I ACTGG 1 cut(s) 897
Bse21I CCTNAGG 2 cut(s) 369, 1234
Bse3DI GCAATG 1 cut(s) 223
BseBI CCWGG 3 cut(s) 162, 354, 1479
BseDI CCNNGG 3 cut(s) 352, 353, 450
BseGI GGATG 2 cut(s) 866, 1094
BseLI CCNNNNNNNGG 2 cut(s) 776, 1262
BseMI GCAATG 1 cut(s) 223
BseMII CTCAG 8 cut(s) 360, 417, 632, 885, 1110, 1172, 1179, 1248
BseNI ACTGG 1 cut(s) 897
BseRI GAGGAG 2 cut(s) 386, 1292
BseXI GCAGC 7 cut(s) 171, 694, 722, 751, 760, 943, 1278
BsgI GTGCAG 2 cut(s) 750, 1430
BshFI GGCC 1 cut(s) 732
BsiHKCI CYCGRG 2 cut(s) 811, 919
BsiSI CCGG 1 cut(s) 1512
BslFI GGGAC 3 cut(s) 152, 838, 1232
BslI CCNNNNNNNGG 2 cut(s) 776, 1262
BsmAI GTCTC 3 cut(s) 887, 1214, 1344
BsmFI GGGAC 3 cut(s) 152, 838, 1232
BsnI GGCC 1 cut(s) 732
Bso31I GGTCTC 1 cut(s) 887
BsoBI CYCGRG 2 cut(s) 811, 919
Bsp143I GATC 7 cut(s) 310, 364, 752, 949, 1024, 1118, 1459
Bsp1720I GCTNAGC 1 cut(s) 322
BspACI CCGC 1 cut(s) 121
BspANI GGCC 1 cut(s) 732
BspCNI CTCAG 8 cut(s) 361, 418, 631, 884, 1109, 1171, 1178, 1247
BspLI GGNNCC 3 cut(s) 174, 276, 366
BspMAI CTGCAG 2 cut(s) 712, 778
BspMI ACCTGC 1 cut(s) 778
BspPI GGATC 5 cut(s) 359, 372, 760, 1019, 1454
BspQI GCTCTTC 1 cut(s) 174
BspTNI GGTCTC 1 cut(s) 887
BsrDI GCAATG 1 cut(s) 223
BsrI ACTGG 1 cut(s) 897
BssECI CCNNGG 3 cut(s) 352, 353, 450
BssMI GATC 7 cut(s) 310, 364, 752, 949, 1024, 1118, 1459
BssNI GRCGYC 2 cut(s) 84, 818
Bst2UI CCWGG 3 cut(s) 162, 354, 1479
Bst4CI ACNGT 4 cut(s) 143, 852, 1057, 1174
Bst6I CTCTTC 3 cut(s) 174, 565, 1394
BstACI GRCGYC 2 cut(s) 84, 818
BstAPI GCANNNNNTGC 4 cut(s) 707, 764, 773, 1070
BstC8I GCNNGC 3 cut(s) 546, 578, 1130
BstDEI CTNAG 9 cut(s) 322, 369, 426, 618, 871, 1096, 1158, 1165, 1234
BstDSI CCRYGG 1 cut(s) 450
BstEII GGTNACC 1 cut(s) 1507
BstENI CCTNNNNNAGG 1 cut(s) 774
BstF5I GGATG 2 cut(s) 866, 1094
BstH2I RGCGCY 1 cut(s) 1421
BstHHI GCGC 1 cut(s) 1420
BstKTI GATC 7 cut(s) 313, 367, 755, 952, 1027, 1121, 1462
BstMAI GTCTC 3 cut(s) 887, 1214, 1344
BstMBI GATC 7 cut(s) 310, 364, 752, 949, 1024, 1118, 1459
BstMWI GCNNNNNNNGC 6 cut(s) 707, 764, 770, 773, 1070, 1417
BstNI CCWGG 3 cut(s) 162, 354, 1479
BstNSI RCATGY 1 cut(s) 743
BstPI GGTNACC 1 cut(s) 1507
BstSCI CCNGG 4 cut(s) 160, 352, 1477, 1511
BstSFI CTRYAG 4 cut(s) 210, 304, 708, 774
BstV1I GCAGC 7 cut(s) 171, 694, 722, 751, 760, 943, 1278
BstV2I GAAGAC 2 cut(s) 714, 1235
BstX2I RGATCY 4 cut(s) 364, 752, 1118, 1459
BstYI RGATCY 4 cut(s) 364, 752, 1118, 1459
Bsu36I CCTNAGG 2 cut(s) 369, 1234
BsuRI GGCC 1 cut(s) 732
BtgI CCRYGG 1 cut(s) 450
BtgZI GCGATG 1 cut(s) 575
BtsCI GGATG 2 cut(s) 866, 1094
BtsIMutI CAGTG 2 cut(s) 148, 688
BveI ACCTGC 1 cut(s) 778
Cac8I GCNNGC 3 cut(s) 546, 578, 1130
CfoI GCGC 1 cut(s) 1420
Cfr13I GGNCC 4 cut(s) 172, 447, 730, 1092
CseI GACGC 2 cut(s) 92, 807
Csp6I GTAC 1 cut(s) 1175
CviAII CATG 3 cut(s) 68, 740, 1190
CviQI GTAC 1 cut(s) 1175
DdeI CTNAG 9 cut(s) 322, 369, 426, 618, 871, 1096, 1158, 1165, 1234
DpnI GATC 7 cut(s) 312, 366, 754, 951, 1026, 1120, 1461
DpnII GATC 7 cut(s) 310, 364, 752, 949, 1024, 1118, 1459
DriI GACNNNNNGTC 2 cut(s) 526, 1236
Eam1104I CTCTTC 3 cut(s) 174, 565, 1394
Eam1105I GACNNNNNGTC 2 cut(s) 526, 1236
EarI CTCTTC 3 cut(s) 174, 565, 1394
Eco31I GGTCTC 1 cut(s) 887
Eco47I GGWCC 3 cut(s) 172, 447, 1092
Eco57I CTGAAG 2 cut(s) 173, 198
Eco81I CCTNAGG 2 cut(s) 369, 1234
Eco88I CYCGRG 2 cut(s) 811, 919
Eco91I GGTNACC 1 cut(s) 1507
EcoNI CCTNNNNNAGG 1 cut(s) 774
EcoO65I GGTNACC 1 cut(s) 1507
EcoRII CCWGG 3 cut(s) 160, 352, 1477
EcoT22I ATGCAT 1 cut(s) 1524
FaeI CATG 3 cut(s) 71, 743, 1193
FalI AAGNNNNNCTT 6 cut(s) 171, 203, 1012, 1044, 1250, 1282
FaqI GGGAC 3 cut(s) 152, 838, 1232
FatI CATG 3 cut(s) 67, 739, 1189
FauNDI CATATG 1 cut(s) 1224
FblI GTMKAC 1 cut(s) 464
Fnu4HI GCNGC 7 cut(s) 185, 708, 711, 765, 774, 957, 1292
FokI GGATG 2 cut(s) 853, 1101
Fsp4HI GCNGC 7 cut(s) 185, 708, 711, 765, 774, 957, 1292
FspBI CTAG 2 cut(s) 156, 549
GlaI GCGC 1 cut(s) 1419
GluI GCNGC 7 cut(s) 185, 708, 711, 765, 774, 957, 1292
GsuI CTGGAG 3 cut(s) 225, 864, 1500
HaeII RGCGCY 1 cut(s) 1421
HaeIII GGCC 1 cut(s) 732
HapII CCGG 1 cut(s) 1512
HgaI GACGC 2 cut(s) 92, 807
HhaI GCGC 1 cut(s) 1420
Hin1I GRCGYC 2 cut(s) 84, 818
Hin1II CATG 3 cut(s) 71, 743, 1193
Hin6I GCGC 1 cut(s) 1418
HinP1I GCGC 1 cut(s) 1418
HincII GTYRAC 1 cut(s) 1393
HindII GTYRAC 1 cut(s) 1393
HindIII AAGCTT 1 cut(s) 41
HpaII CCGG 1 cut(s) 1512
HphI GGTGA 3 cut(s) 961, 1245, 1519
Hpy166II GTNNAC 8 cut(s) 77, 388, 450, 465, 1041, 1060, 1376, 1393
Hpy188I TCNGA 9 cut(s) 97, 192, 265, 409, 555, 1099, 1116, 1161, 1168
Hpy8I GTNNAC 8 cut(s) 77, 388, 450, 465, 1041, 1060, 1376, 1393
HpyAV CCTTC 5 cut(s) 157, 270, 993, 1293, 1408
HpyCH4III ACNGT 4 cut(s) 143, 852, 1057, 1174
HpyCH4IV ACGT 1 cut(s) 110
HpyF10VI GCNNNNNNNGC 6 cut(s) 707, 764, 770, 773, 1070, 1417
HpyF3I CTNAG 9 cut(s) 322, 369, 426, 618, 871, 1096, 1158, 1165, 1234
HpySE526I ACGT 1 cut(s) 110
Hsp92I GRCGYC 2 cut(s) 84, 818
Hsp92II CATG 3 cut(s) 71, 743, 1193
HspAI GCGC 1 cut(s) 1418
Kzo9I GATC 7 cut(s) 310, 364, 752, 949, 1024, 1118, 1459
LguI GCTCTTC 1 cut(s) 174
LmnI GCTCC 1 cut(s) 206
Lsp1109I GCAGC 7 cut(s) 171, 694, 722, 751, 760, 943, 1278
LweI GCATC 4 cut(s) 598, 665, 1073, 1499
MaeI CTAG 2 cut(s) 156, 549
MaeII ACGT 1 cut(s) 110
MaeIII GTNAC 2 cut(s) 411, 1507
MalI GATC 7 cut(s) 312, 366, 754, 951, 1026, 1120, 1461
MboI GATC 7 cut(s) 310, 364, 752, 949, 1024, 1118, 1459
MflI RGATCY 4 cut(s) 364, 752, 1118, 1459
MluCI AATT 6 cut(s) 222, 293, 503, 557, 641, 1541
MlyI GAGTC 6 cut(s) 82, 275, 419, 464, 1120, 1254
MmeI TCCRAC 1 cut(s) 150
Mph1103I ATGCAT 1 cut(s) 1524
MroXI GAANNNNTTC 1 cut(s) 1265
MseI TTAA 4 cut(s) 114, 225, 432, 663
MslI CAYNNNNRTG 1 cut(s) 1020
MspA1I CMGCKG 1 cut(s) 707
MspI CCGG 1 cut(s) 1512
MspR9I CCNGG 4 cut(s) 162, 354, 1479, 1513
MvaI CCWGG 3 cut(s) 162, 354, 1479
MwoI GCNNNNNNNGC 6 cut(s) 707, 764, 770, 773, 1070, 1417
NciI CCSGG 1 cut(s) 1513
NdeI CATATG 1 cut(s) 1224
NdeII GATC 7 cut(s) 310, 364, 752, 949, 1024, 1118, 1459
NlaIII CATG 3 cut(s) 71, 743, 1193
NlaIV GGNNCC 3 cut(s) 174, 276, 366
NmuCI GTSAC 2 cut(s) 411, 1507
NsiI ATGCAT 1 cut(s) 1524
NspI RCATGY 1 cut(s) 743
OliI CACNNNNGTG 1 cut(s) 1020
PaeR7I CTCGAG 2 cut(s) 811, 919
PaqCI CACCTGC 1 cut(s) 778
PasI CCCWGGG 1 cut(s) 353
PciI ACATGT 1 cut(s) 739
PciSI GCTCTTC 1 cut(s) 174
PdmI GAANNNNTTC 1 cut(s) 1265
PfeI GAWTC 5 cut(s) 396, 691, 990, 1100, 1135
PflMI CCANNNNNTGG 1 cut(s) 1262
PfoI TCCNGGA 2 cut(s) 160, 1477
PkrI GCNGC 7 cut(s) 186, 709, 712, 766, 775, 958, 1293
PleI GAGTC 6 cut(s) 81, 274, 418, 463, 1119, 1253
PpsI GAGTC 6 cut(s) 81, 274, 418, 463, 1119, 1253
PscI ACATGT 1 cut(s) 739
Psp6I CCWGG 3 cut(s) 160, 352, 1477
PspEI GGTNACC 1 cut(s) 1507
PspGI CCWGG 3 cut(s) 160, 352, 1477
PspN4I GGNNCC 3 cut(s) 174, 276, 366
PspPI GGNCC 4 cut(s) 172, 447, 730, 1092
PspXI VCTCGAGB 1 cut(s) 811
PstI CTGCAG 2 cut(s) 712, 778
PsuI RGATCY 4 cut(s) 364, 752, 1118, 1459
PvuII CAGCTG 1 cut(s) 707
RsaI GTAC 1 cut(s) 1176
RsaNI GTAC 1 cut(s) 1175
RseI CAYNNNNRTG 1 cut(s) 1020
SapI GCTCTTC 1 cut(s) 174
SaqAI TTAA 4 cut(s) 114, 225, 432, 663
SatI GCNGC 7 cut(s) 185, 708, 711, 765, 774, 957, 1292
Sau3AI GATC 7 cut(s) 310, 364, 752, 949, 1024, 1118, 1459
Sau96I GGNCC 4 cut(s) 172, 447, 730, 1092
SchI GAGTC 6 cut(s) 82, 275, 419, 464, 1120, 1254
ScrFI CCNGG 4 cut(s) 162, 354, 1479, 1513
SfaNI GCATC 4 cut(s) 598, 665, 1073, 1499
SfcI CTRYAG 4 cut(s) 210, 304, 708, 774
Sfr274I CTCGAG 2 cut(s) 811, 919
SinI GGWCC 3 cut(s) 172, 447, 1092
SlaI CTCGAG 2 cut(s) 811, 919
SmiMI CAYNNNNRTG 1 cut(s) 1020
SmlI CTYRAG 2 cut(s) 811, 919
SmoI CTYRAG 2 cut(s) 811, 919
SpeI ACTAGT 1 cut(s) 155
Sse9I AATT 6 cut(s) 222, 293, 503, 557, 641, 1541
SsiI CCGC 1 cut(s) 121
SspMI CTAG 2 cut(s) 156, 549
StyD4I CCNGG 4 cut(s) 160, 352, 1477, 1511
TaaI ACNGT 4 cut(s) 143, 852, 1057, 1174
TaiI ACGT 1 cut(s) 113
TaqI TCGA 7 cut(s) 63, 313, 458, 596, 812, 920, 1272
TaqII GACCGA 1 cut(s) 1483
TasI AATT 6 cut(s) 222, 293, 503, 557, 641, 1541
TfiI GAWTC 5 cut(s) 396, 691, 990, 1100, 1135
Tru1I TTAA 4 cut(s) 114, 225, 432, 663
Tru9I TTAA 4 cut(s) 114, 225, 432, 663
TscAI CASTG 2 cut(s) 148, 688
TseFI GTSAC 2 cut(s) 411, 1507
TseI GCWGC 7 cut(s) 184, 707, 710, 764, 773, 956, 1291
Tsp45I GTSAC 2 cut(s) 411, 1507
TspDTI ATGAA 7 cut(s) 603, 929, 1026, 1206, 1241, 1304, 1470
TspGWI ACGGA 1 cut(s) 467
TspRI CASTG 2 cut(s) 148, 688
Van91I CCANNNNNTGG 1 cut(s) 1262
VpaK11BI GGWCC 3 cut(s) 172, 447, 1092
XagI CCTNNNNNAGG 1 cut(s) 774
XapI RAATTY 3 cut(s) 293, 503, 641
XceI RCATGY 1 cut(s) 743
XhoI CTCGAG 2 cut(s) 811, 919
XmiI GTMKAC 1 cut(s) 464
XmnI GAANNNNTTC 1 cut(s) 1265
XspI CTAG 2 cut(s) 156, 549
Zsp2I ATGCAT 1 cut(s) 1524
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.