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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_7g20180 FvH4_7g20190 FvH4_7g20190 FvH4_7g20190 FvH4_7g20221 |
| malus_domestica | MD01G1131600.v1.1 MD07G1179700.v1.1 |
| prunus_persica | Prupe.2G219100_v2.0.a1 Prupe.2G219100_v2.0.a1 Prupe.2G222400_v2.0.a1 Prupe.2G222500_v2.0.a1 Prupe.2G222500_v2.0.a1 Prupe.2G222500_v2.0.a1 Prupe.2G222600_v2.0.a1 Prupe.2G222600_v2.0.a1 Prupe.2G222600_v2.0.a1 Prupe.2G222800_v2.0.a1 Prupe.2G222900_v2.0.a1 Prupe.2G223000_v2.0.a1 |
| pyrus_communis | pycom01g14040 pycom07g17320 |
| rosa_chinensis | RchiOBHm_Chr1g0364171 |
| rosa_laevigata | RLG00000027510 RLG00000027511 RLG00000027512 |
| rosa_roxburghii | Rroxscaffold_4G00292590 |
| rosa_rugosa | Rorug01G0314100 |
| rosa_samantha | Rh1AG321400 |
| rosa_wichuraiana | Rw1G028510 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 1255 |
| Acc36I | ACCTGC | 2 cut(s) | 1255, 1336 |
| AccB1I | GGYRCC | 1 cut(s) | 2084 |
| AccI | GTMKAC | 2 cut(s) | 470, 1059 |
| AccII | CGCG | 2 cut(s) | 1156, 1744 |
| AciI | CCGC | 3 cut(s) | 142, 701, 1154 |
| AclWI | GGATC | 4 cut(s) | 716, 1097, 1152, 1762 |
| AcsI | RAATTY | 3 cut(s) | 220, 769, 1189 |
| AcuI | CTGAAG | 5 cut(s) | 194, 1038, 1257, 1857, 1950 |
| AcyI | GRCGYC | 2 cut(s) | 105, 1789 |
| AdeI | CACNNNGTG | 1 cut(s) | 1903 |
| AfaI | GTAC | 2 cut(s) | 614, 1614 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 375, 929, 1037, 1415, 1547, 1772, 1960, 2012 |
| AflIII | ACRYGT | 1 cut(s) | 2077 |
| AjnI | CCWGG | 4 cut(s) | 181, 445, 892, 2011 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1923, 1955 |
| Alw21I | GWGCWC | 1 cut(s) | 98 |
| Alw26I | GTCTC | 4 cut(s) | 294, 1372, 1529, 1559 |
| AlwI | GGATC | 4 cut(s) | 716, 1097, 1152, 1762 |
| AoxI | GGCC | 1 cut(s) | 1845 |
| ApeKI | GCWGC | 9 cut(s) | 116, 205, 749, 830, 833, 887, 1590, 1664, 1862 |
| ApoI | RAATTY | 3 cut(s) | 220, 769, 1189 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 667, 699 |
| AspS9I | GGNCC | 3 cut(s) | 193, 1845, 1951 |
| AsuHPI | GGTGA | 5 cut(s) | 358, 1190, 1236, 1530, 1975 |
| AvaII | GGWCC | 2 cut(s) | 193, 1951 |
| AxyI | CCTNAGG | 1 cut(s) | 198 |
| BanI | GGYRCC | 1 cut(s) | 2084 |
| BanII | GRGCYC | 1 cut(s) | 98 |
| BauI | CACGAG | 1 cut(s) | 1519 |
| BbsI | GAAGAC | 4 cut(s) | 1099, 1172, 1221, 1998 |
| Bbv12I | GWGCWC | 1 cut(s) | 98 |
| BbvI | GCAGC | 9 cut(s) | 128, 192, 736, 817, 845, 874, 1602, 1651, 1849 |
| BccI | CCATC | 6 cut(s) | 62, 973, 1256, 1543, 1700, 1939 |
| BceAI | ACGGC | 1 cut(s) | 1582 |
| BciT130I | CCWGG | 4 cut(s) | 183, 447, 894, 2013 |
| BciVI | GTATCC | 1 cut(s) | 946 |
| BcoDI | GTCTC | 4 cut(s) | 294, 1372, 1529, 1559 |
| BfaI | CTAG | 6 cut(s) | 1206, 1251, 1328, 1491, 1629, 1695 |
| BfmI | CTRYAG | 4 cut(s) | 402, 831, 940, 1339 |
| BfuAI | ACCTGC | 2 cut(s) | 1255, 1336 |
| BfuI | GTATCC | 1 cut(s) | 946 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 842 |
| BglII | AGATCT | 1 cut(s) | 1304 |
| BisI | GCNGC | 9 cut(s) | 117, 206, 750, 831, 834, 888, 1591, 1665, 1863 |
| BlsI | GCNGC | 9 cut(s) | 118, 207, 751, 832, 835, 889, 1592, 1666, 1864 |
| Bme1390I | CCNGG | 4 cut(s) | 183, 447, 894, 2013 |
| Bme18I | GGWCC | 2 cut(s) | 193, 1951 |
| BmgT120I | GGNCC | 3 cut(s) | 193, 1845, 1951 |
| BmiI | GGNNCC | 4 cut(s) | 195, 297, 1442, 2086 |
| BmrFI | CCNGG | 4 cut(s) | 183, 447, 894, 2013 |
| BmsI | GCATC | 7 cut(s) | 622, 677, 788, 1385, 1748, 1785, 2053 |
| BpiI | GAAGAC | 4 cut(s) | 1099, 1172, 1221, 1998 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 467, 499 |
| BpuEI | CTTGAG | 3 cut(s) | 542, 1940, 1942 |
| BsaHI | GRCGYC | 2 cut(s) | 105, 1789 |
| BsaJI | CCNNGG | 5 cut(s) | 446, 510, 893, 1140, 1784 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1741, 1771 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 375, 929, 1037, 1415, 1547, 1772, 1960, 2012 |
| Bse118I | RCCGGY | 2 cut(s) | 233, 664 |
| Bse1I | ACTGG | 6 cut(s) | 18, 369, 1188, 1420, 1645, 1756 |
| Bse21I | CCTNAGG | 1 cut(s) | 198 |
| Bse3DI | GCAATG | 1 cut(s) | 244 |
| BseBI | CCWGG | 4 cut(s) | 183, 447, 894, 2013 |
| BseDI | CCNNGG | 5 cut(s) | 446, 510, 893, 1140, 1784 |
| BseGI | GGATG | 6 cut(s) | 651, 657, 668, 965, 1183, 1950 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 375, 929, 1037, 1415, 1547, 1772, 1960, 2012 |
| BseMI | GCAATG | 1 cut(s) | 244 |
| BseMII | CTCAG | 4 cut(s) | 189, 276, 1308, 1385 |
| BseNI | ACTGG | 6 cut(s) | 18, 369, 1188, 1420, 1645, 1756 |
| BseRI | GAGGAG | 4 cut(s) | 215, 609, 1140, 1577 |
| BseXI | GCAGC | 9 cut(s) | 128, 192, 736, 817, 845, 874, 1602, 1651, 1849 |
| BsgI | GTGCAG | 3 cut(s) | 393, 873, 1396 |
| Bsh1236I | CGCG | 2 cut(s) | 1156, 1744 |
| BshFI | GGCC | 1 cut(s) | 1847 |
| BshNI | GGYRCC | 1 cut(s) | 2084 |
| BsiHKAI | GWGCWC | 1 cut(s) | 98 |
| BsiSI | CCGG | 2 cut(s) | 234, 665 |
| BslFI | GGGAC | 2 cut(s) | 173, 1732 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 375, 929, 1037, 1415, 1547, 1772, 1960, 2012 |
| BsmAI | GTCTC | 4 cut(s) | 294, 1372, 1529, 1559 |
| BsmFI | GGGAC | 2 cut(s) | 173, 1732 |
| BsmI | GAATGC | 2 cut(s) | 118, 1054 |
| BsnI | GGCC | 1 cut(s) | 1847 |
| Bsp1286I | GDGCHC | 1 cut(s) | 98 |
| Bsp1407I | TGTACA | 2 cut(s) | 612, 1612 |
| Bsp143I | GATC | 8 cut(s) | 548, 708, 1102, 1157, 1304, 1580, 1754, 2092 |
| Bsp19I | CCATGG | 1 cut(s) | 1140 |
| BspACI | CCGC | 3 cut(s) | 142, 701, 1154 |
| BspANI | GGCC | 1 cut(s) | 1847 |
| BspCNI | CTCAG | 4 cut(s) | 190, 277, 1309, 1384 |
| BspFNI | CGCG | 2 cut(s) | 1156, 1744 |
| BspLI | GGNNCC | 4 cut(s) | 195, 297, 1442, 2086 |
| BspMAI | CTGCAG | 3 cut(s) | 835, 944, 1343 |
| BspMI | ACCTGC | 2 cut(s) | 1255, 1336 |
| BspPI | GGATC | 4 cut(s) | 716, 1097, 1152, 1762 |
| BspT107I | GGYRCC | 1 cut(s) | 2084 |
| BsrDI | GCAATG | 1 cut(s) | 244 |
| BsrFI | RCCGGY | 2 cut(s) | 233, 664 |
| BsrGI | TGTACA | 2 cut(s) | 612, 1612 |
| BsrI | ACTGG | 6 cut(s) | 18, 369, 1188, 1420, 1645, 1756 |
| BssAI | RCCGGY | 2 cut(s) | 233, 664 |
| BssECI | CCNNGG | 5 cut(s) | 446, 510, 893, 1140, 1784 |
| BssMI | GATC | 8 cut(s) | 548, 708, 1102, 1157, 1304, 1580, 1754, 2092 |
| BssNI | GRCGYC | 2 cut(s) | 105, 1789 |
| BssSI | CACGAG | 1 cut(s) | 1519 |
| BssT1I | CCWWGG | 2 cut(s) | 510, 1140 |
| Bst2BI | CACGAG | 1 cut(s) | 1519 |
| Bst2UI | CCWGG | 4 cut(s) | 183, 447, 894, 2013 |
| Bst4CI | ACNGT | 2 cut(s) | 149, 164 |
| Bst6I | CTCTTC | 2 cut(s) | 261, 1835 |
| BstACI | GRCGYC | 2 cut(s) | 105, 1789 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 887, 1599 |
| BstAUI | TGTACA | 2 cut(s) | 612, 1612 |
| BstC8I | GCNNGC | 6 cut(s) | 517, 666, 1343, 1595, 1682, 1737 |
| BstDEI | CTNAG | 6 cut(s) | 198, 285, 390, 1308, 1317, 1371 |
| BstDSI | CCRYGG | 1 cut(s) | 1140 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1958 |
| BstF5I | GGATG | 6 cut(s) | 651, 657, 668, 965, 1183, 1950 |
| BstFNI | CGCG | 2 cut(s) | 1156, 1744 |
| BstKTI | GATC | 8 cut(s) | 551, 711, 1105, 1160, 1307, 1583, 1757, 2095 |
| BstMAI | GTCTC | 4 cut(s) | 294, 1372, 1529, 1559 |
| BstMBI | GATC | 8 cut(s) | 548, 708, 1102, 1157, 1304, 1580, 1754, 2092 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 113, 700, 842, 887, 1405, 1599, 1741 |
| BstNI | CCWGG | 4 cut(s) | 183, 447, 894, 2013 |
| BstNSI | RCATGY | 3 cut(s) | 1597, 2005, 2081 |
| BstSCI | CCNGG | 4 cut(s) | 181, 445, 892, 2011 |
| BstSFI | CTRYAG | 4 cut(s) | 402, 831, 940, 1339 |
| BstUI | CGCG | 2 cut(s) | 1156, 1744 |
| BstV1I | GCAGC | 9 cut(s) | 128, 192, 736, 817, 845, 874, 1602, 1651, 1849 |
| BstV2I | GAAGAC | 4 cut(s) | 1099, 1172, 1221, 1998 |
| BstX2I | RGATCY | 3 cut(s) | 708, 1304, 1754 |
| BstYI | RGATCY | 3 cut(s) | 708, 1304, 1754 |
| Bsu36I | CCTNAGG | 1 cut(s) | 198 |
| BsuI | GTATCC | 1 cut(s) | 946 |
| BsuRI | GGCC | 1 cut(s) | 1847 |
| BtgI | CCRYGG | 1 cut(s) | 1140 |
| BtgZI | GCGATG | 1 cut(s) | 1725 |
| BtsCI | GGATG | 6 cut(s) | 651, 657, 668, 965, 1183, 1950 |
| BtsI | GCAGTG | 2 cut(s) | 949, 1062 |
| BtsIMutI | CAGTG | 7 cut(s) | 25, 169, 376, 949, 1062, 1413, 1476 |
| BveI | ACCTGC | 2 cut(s) | 1255, 1336 |
| Cac8I | GCNNGC | 6 cut(s) | 517, 666, 1343, 1595, 1682, 1737 |
| Cfr10I | RCCGGY | 2 cut(s) | 233, 664 |
| Cfr13I | GGNCC | 3 cut(s) | 193, 1845, 1951 |
| CseI | GACGC | 2 cut(s) | 113, 1778 |
| Csp6I | GTAC | 2 cut(s) | 613, 1613 |
| CviQI | GTAC | 2 cut(s) | 613, 1613 |
| DdeI | CTNAG | 6 cut(s) | 198, 285, 390, 1308, 1317, 1371 |
| DpnI | GATC | 8 cut(s) | 550, 710, 1104, 1159, 1306, 1582, 1756, 2094 |
| DpnII | GATC | 8 cut(s) | 548, 708, 1102, 1157, 1304, 1580, 1754, 2092 |
| DraIII | CACNNNGTG | 1 cut(s) | 1903 |
| Eam1104I | CTCTTC | 2 cut(s) | 261, 1835 |
| EarI | CTCTTC | 2 cut(s) | 261, 1835 |
| Ecl136II | GAGCTC | 1 cut(s) | 96 |
| Eco130I | CCWWGG | 2 cut(s) | 510, 1140 |
| Eco24I | GRGCYC | 1 cut(s) | 98 |
| Eco32I | GATATC | 1 cut(s) | 801 |
| Eco47I | GGWCC | 2 cut(s) | 193, 1951 |
| Eco53kI | GAGCTC | 1 cut(s) | 96 |
| Eco57I | CTGAAG | 5 cut(s) | 194, 1038, 1257, 1857, 1950 |
| Eco81I | CCTNAGG | 1 cut(s) | 198 |
| EcoICRI | GAGCTC | 1 cut(s) | 96 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1958 |
| EcoRI | GAATTC | 2 cut(s) | 220, 769 |
| EcoRII | CCWGG | 4 cut(s) | 181, 445, 892, 2011 |
| EcoRV | GATATC | 1 cut(s) | 801 |
| EcoT14I | CCWWGG | 2 cut(s) | 510, 1140 |
| EcoT22I | ATGCAT | 1 cut(s) | 244 |
| EcoT38I | GRGCYC | 1 cut(s) | 98 |
| ErhI | CCWWGG | 2 cut(s) | 510, 1140 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 331, 363 |
| FaqI | GGGAC | 2 cut(s) | 173, 1732 |
| FblI | GTMKAC | 2 cut(s) | 470, 1059 |
| Fnu4HI | GCNGC | 9 cut(s) | 117, 206, 750, 831, 834, 888, 1591, 1665, 1863 |
| FokI | GGATG | 6 cut(s) | 655, 658, 664, 952, 1190, 1957 |
| FriOI | GRGCYC | 1 cut(s) | 98 |
| Fsp4HI | GCNGC | 9 cut(s) | 117, 206, 750, 831, 834, 888, 1591, 1665, 1863 |
| FspBI | CTAG | 6 cut(s) | 1206, 1251, 1328, 1491, 1629, 1695 |
| GluI | GCNGC | 9 cut(s) | 117, 206, 750, 831, 834, 888, 1591, 1665, 1863 |
| HaeIII | GGCC | 1 cut(s) | 1847 |
| HapII | CCGG | 2 cut(s) | 234, 665 |
| HgaI | GACGC | 2 cut(s) | 113, 1778 |
| Hin1I | GRCGYC | 2 cut(s) | 105, 1789 |
| HindIII | AAGCTT | 3 cut(s) | 62, 1682, 1733 |
| HinfI | GANTC | 6 cut(s) | 287, 386, 476, 1010, 1297, 1855 |
| HpaII | CCGG | 2 cut(s) | 234, 665 |
| HphI | GGTGA | 5 cut(s) | 358, 1190, 1236, 1530, 1975 |
| Hpy166II | GTNNAC | 9 cut(s) | 409, 471, 615, 788, 1060, 1505, 1613, 1906, 1966 |
| Hpy188I | TCNGA | 9 cut(s) | 213, 286, 645, 1224, 1318, 1381, 1431, 1529, 1876 |
| Hpy8I | GTNNAC | 9 cut(s) | 409, 471, 615, 788, 1060, 1505, 1613, 1906, 1966 |
| HpyAV | CCTTC | 7 cut(s) | 178, 291, 831, 1090, 1212, 1954, 2042 |
| HpyCH4III | ACNGT | 2 cut(s) | 149, 164 |
| HpyCH4IV | ACGT | 2 cut(s) | 1267, 1453 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 113, 700, 842, 887, 1405, 1599, 1741 |
| HpyF3I | CTNAG | 6 cut(s) | 198, 285, 390, 1308, 1317, 1371 |
| HpySE526I | ACGT | 2 cut(s) | 1267, 1453 |
| Hsp92I | GRCGYC | 2 cut(s) | 105, 1789 |
| KroI | GCCGGC | 1 cut(s) | 664 |
| KroNI | GCCGGC | 1 cut(s) | 666 |
| Kzo9I | GATC | 8 cut(s) | 548, 708, 1102, 1157, 1304, 1580, 1754, 2092 |
| LmnI | GCTCC | 4 cut(s) | 93, 202, 1446, 1661 |
| Lsp1109I | GCAGC | 9 cut(s) | 128, 192, 736, 817, 845, 874, 1602, 1651, 1849 |
| LweI | GCATC | 7 cut(s) | 622, 677, 788, 1385, 1748, 1785, 2053 |
| MaeI | CTAG | 6 cut(s) | 1206, 1251, 1328, 1491, 1629, 1695 |
| MaeII | ACGT | 2 cut(s) | 1267, 1453 |
| MaeIII | GTNAC | 2 cut(s) | 1107, 1649 |
| MalI | GATC | 8 cut(s) | 550, 710, 1104, 1159, 1306, 1582, 1756, 2094 |
| MboI | GATC | 8 cut(s) | 548, 708, 1102, 1157, 1304, 1580, 1754, 2092 |
| MflI | RGATCY | 3 cut(s) | 708, 1304, 1754 |
| MhlI | GDGCHC | 1 cut(s) | 98 |
| MlyI | GAGTC | 4 cut(s) | 296, 485, 1019, 1849 |
| Mph1103I | ATGCAT | 1 cut(s) | 244 |
| MroNI | GCCGGC | 1 cut(s) | 664 |
| MseI | TTAA | 8 cut(s) | 135, 246, 687, 713, 813, 1824, 1851, 2069 |
| MslI | CAYNNNNRTG | 3 cut(s) | 1398, 1608, 2082 |
| MspA1I | CMGCKG | 1 cut(s) | 830 |
| MspI | CCGG | 2 cut(s) | 234, 665 |
| MspR9I | CCNGG | 4 cut(s) | 183, 447, 894, 2013 |
| Mva1269I | GAATGC | 2 cut(s) | 118, 1054 |
| MvaI | CCWGG | 4 cut(s) | 183, 447, 894, 2013 |
| MvnI | CGCG | 2 cut(s) | 1156, 1744 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 113, 700, 842, 887, 1405, 1599, 1741 |
| NaeI | GCCGGC | 1 cut(s) | 666 |
| NcoI | CCATGG | 1 cut(s) | 1140 |
| NdeII | GATC | 8 cut(s) | 548, 708, 1102, 1157, 1304, 1580, 1754, 2092 |
| NgoMIV | GCCGGC | 1 cut(s) | 664 |
| NlaIV | GGNNCC | 4 cut(s) | 195, 297, 1442, 2086 |
| NmeAIII | GCCGAG | 1 cut(s) | 1765 |
| NmuCI | GTSAC | 1 cut(s) | 1107 |
| NsiI | ATGCAT | 1 cut(s) | 244 |
| NspI | RCATGY | 3 cut(s) | 1597, 2005, 2081 |
| PaeI | GCATGC | 1 cut(s) | 1597 |
| PaqCI | CACCTGC | 1 cut(s) | 1255 |
| PciI | ACATGT | 1 cut(s) | 2077 |
| PctI | GAATGC | 2 cut(s) | 118, 1054 |
| PdiI | GCCGGC | 1 cut(s) | 666 |
| PfeI | GAWTC | 2 cut(s) | 386, 1297 |
| PflFI | GACNNNGTC | 1 cut(s) | 910 |
| PfoI | TCCNGGA | 2 cut(s) | 181, 2011 |
| PkrI | GCNGC | 9 cut(s) | 118, 207, 751, 832, 835, 889, 1592, 1666, 1864 |
| PleI | GAGTC | 4 cut(s) | 295, 484, 1018, 1849 |
| PpsI | GAGTC | 4 cut(s) | 295, 484, 1018, 1849 |
| PscI | ACATGT | 1 cut(s) | 2077 |
| Psp124BI | GAGCTC | 1 cut(s) | 98 |
| Psp6I | CCWGG | 4 cut(s) | 181, 445, 892, 2011 |
| PspGI | CCWGG | 4 cut(s) | 181, 445, 892, 2011 |
| PspN4I | GGNNCC | 4 cut(s) | 195, 297, 1442, 2086 |
| PspPI | GGNCC | 3 cut(s) | 193, 1845, 1951 |
| PstI | CTGCAG | 3 cut(s) | 835, 944, 1343 |
| PsuI | RGATCY | 3 cut(s) | 708, 1304, 1754 |
| PsyI | GACNNNGTC | 1 cut(s) | 910 |
| PvuII | CAGCTG | 1 cut(s) | 830 |
| RsaI | GTAC | 2 cut(s) | 614, 1614 |
| RsaNI | GTAC | 2 cut(s) | 613, 1613 |
| RseI | CAYNNNNRTG | 3 cut(s) | 1398, 1608, 2082 |
| SacI | GAGCTC | 1 cut(s) | 98 |
| SaqAI | TTAA | 8 cut(s) | 135, 246, 687, 713, 813, 1824, 1851, 2069 |
| SatI | GCNGC | 9 cut(s) | 117, 206, 750, 831, 834, 888, 1591, 1665, 1863 |
| Sau3AI | GATC | 8 cut(s) | 548, 708, 1102, 1157, 1304, 1580, 1754, 2092 |
| Sau96I | GGNCC | 3 cut(s) | 193, 1845, 1951 |
| SchI | GAGTC | 4 cut(s) | 296, 485, 1019, 1849 |
| ScrFI | CCNGG | 4 cut(s) | 183, 447, 894, 2013 |
| SduI | GDGCHC | 1 cut(s) | 98 |
| SfaNI | GCATC | 7 cut(s) | 622, 677, 788, 1385, 1748, 1785, 2053 |
| SfcI | CTRYAG | 4 cut(s) | 402, 831, 940, 1339 |
| SinI | GGWCC | 2 cut(s) | 193, 1951 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 1398, 1608, 2082 |
| SmlI | CTYRAG | 3 cut(s) | 521, 1921, 1955 |
| SmoI | CTYRAG | 3 cut(s) | 521, 1921, 1955 |
| SphI | GCATGC | 1 cut(s) | 1597 |
| SsiI | CCGC | 3 cut(s) | 142, 701, 1154 |
| SspI | AATATT | 2 cut(s) | 1498, 1939 |
| SspMI | CTAG | 6 cut(s) | 1206, 1251, 1328, 1491, 1629, 1695 |
| SstI | GAGCTC | 1 cut(s) | 98 |
| StyD4I | CCNGG | 4 cut(s) | 181, 445, 892, 2011 |
| StyI | CCWWGG | 2 cut(s) | 510, 1140 |
| TaaI | ACNGT | 2 cut(s) | 149, 164 |
| TaiI | ACGT | 2 cut(s) | 1270, 1456 |
| TaqI | TCGA | 1 cut(s) | 226 |
| TatI | WGTACW | 2 cut(s) | 612, 1612 |
| TfiI | GAWTC | 2 cut(s) | 386, 1297 |
| Tru1I | TTAA | 8 cut(s) | 135, 246, 687, 713, 813, 1824, 1851, 2069 |
| Tru9I | TTAA | 8 cut(s) | 135, 246, 687, 713, 813, 1824, 1851, 2069 |
| TscAI | CASTG | 7 cut(s) | 25, 169, 376, 949, 1069, 1420, 1476 |
| TseFI | GTSAC | 1 cut(s) | 1107 |
| TseI | GCWGC | 9 cut(s) | 116, 205, 749, 830, 833, 887, 1590, 1664, 1862 |
| Tsp45I | GTSAC | 1 cut(s) | 1107 |
| TspGWI | ACGGA | 1 cut(s) | 1095 |
| TspRI | CASTG | 7 cut(s) | 25, 169, 376, 949, 1069, 1420, 1476 |
| Tth111I | GACNNNGTC | 1 cut(s) | 910 |
| VpaK11BI | GGWCC | 2 cut(s) | 193, 1951 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1958 |
| XapI | RAATTY | 3 cut(s) | 220, 769, 1189 |
| XbaI | TCTAGA | 2 cut(s) | 1327, 1628 |
| XceI | RCATGY | 3 cut(s) | 1597, 2005, 2081 |
| XmiI | GTMKAC | 2 cut(s) | 470, 1059 |
| XspI | CTAG | 6 cut(s) | 1206, 1251, 1328, 1491, 1629, 1695 |
| Zsp2I | ATGCAT | 1 cut(s) | 244 |