Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0005276

Physical Location & Seq

Genomic Coordinates Forward (+)

12860253 .. 12862618

Gene Structure 2366 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00292590.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1638 bp

ATGACAGAAAGAAGCTTGATGGGTTTAGACTATTCCACACTTGCCTTCTTCACAAATCCAGGAGTCTTGGAACCTGAAGAGCTGCTTCAGACTACGAGTTCTGGAGCTACAGGCAATGCAGTTAACCTACTTGGAAATGAGGAAGAAATACTATTGCCTTCGGAGTCTTTGGAGCCTGAAGGAACCAGAAAATTTGAGAGCTGTAGTTATCGAAAGAGCTTAGCTTGGGATAATGCCTTTTACACTAGTCCAGGGGTTTTGGATCCTGAGGAATTGTCTATAGTAAACAAAGGATTCAAGAAATCTGAGTCACATCAACTTCCTGCTATTCAAGAAGTTTGGCGGTCCACGGAGTTAGAGTCTACAACAGATAGCGGCAGTTCTGCTTTGGCAAGCCTAGAGTTTGAACTTTTTGAGGACAAATTGTTACCTATGCAGAAGCCAGCTAGTCTGAAACTGAAAAGAGGAAGGAGATTGCAAAATGTCCACTCCACAAAGAAAACCGATGCTTCGTCTCGGGTGAAGATGAAAGCCTCAGCATCCCAAAGGCATAATCTTAATAATCAGCCAGAAAGGATTTTAAAGGAGGTTTTTGTTTCCTCACAAAGACAGCTTGCTGCTGGAAGTGGGAAATTCATCCCAACAGCATCTCTTAAACAACCAAAGGTATTTAGTGGCGTTAATCACTCTTCAACAGCTGCAACCAAAAGGTCCTCTTTGGGTGGAAACTATGTCAAGATGGGAACTGCAAAGGCTGCACGTGGACAATGTTCGACTCTTTCAAAGAAACCTTGCTTGAGGGCTTCATCCAGTATTGTCACTCATAGTTCTACACCATCCCCCAAATCGTCACCAGGTTCTCCAGCTGCCAAAGACCCTAGTGAATCTCCAATGAACTCAAGAAGAAAATTTGATTATTCACTTGACGATTTTGCTGCCAATGGCTTAACCATGAGCAATCCTTTGAGATTCAAAAAGAAAGACAAAGATGAACTCGAAAGTTCTTGTCAGGATTCTTGTAAAATGTTCACACCAAAGTCTACCGTTTACTCCTCATTTGCTACTTCTCTTGATGGCTGGTCCTCAGAATCATCATCGTCATCTATGAGTCAAAGATCTATCAGCAGTCAGATTTCTTTTGGGGGTGATGCCTCTCAGGCATCAGATACGGTTCATTGTGTTGGACAGGAAAATCAGGAAACAAGTCTCCCAGATCAGAATATGAAGCCCTCAGGTCTCCGAGTGCCATCACCGAAGATTGGCTTTTTTGACGAGGAGATTACTTTGGTTCAAGCAAGGGGTAGCATGCAGTTTCATTCTGTTCTGCCAAGCACAATGTCTCAAAATGGAGGTGCAAAGCGATATGGGAAGCTTAAACCTCCAAGAAACTTTGATGGGAAAAAGATTGTGCAGAAGGAGCTCAAGAGAGTGAACAAGGAATGCACCAAAGAAAATGAAGAGCCCAACATACATTGTCCTGGAGAAAACATGTTCAGCGGTCAAGATAATAGTGACAGGGAAAATACATATTACTTCAAAAGCCAAATTGAAGCTTTAACTAAACAAGTTGGTATCATTGATCTTGGTTGTGATGTTGTGATGGAGCTCAGAGCAGACAAGAGTGCTTTCCATGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

545

Amino Acids

59.67

Weight (kDa)

8.74

Isoelectric Point (pI)

59.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005276)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g20180 FvH4_7g20190 FvH4_7g20190 FvH4_7g20190 FvH4_7g20221
malus_domestica	MD01G1131600.v1.1 MD07G1179700.v1.1
prunus_persica	Prupe.2G219100_v2.0.a1 Prupe.2G219100_v2.0.a1 Prupe.2G222400_v2.0.a1 Prupe.2G222500_v2.0.a1 Prupe.2G222500_v2.0.a1 Prupe.2G222500_v2.0.a1 Prupe.2G222600_v2.0.a1 Prupe.2G222600_v2.0.a1 Prupe.2G222600_v2.0.a1 Prupe.2G222800_v2.0.a1 Prupe.2G222900_v2.0.a1 Prupe.2G223000_v2.0.a1
pyrus_communis	pycom01g14040 pycom07g17320
rosa_chinensis	RchiOBHm_Chr1g0364171
rosa_laevigata	RLG00000027510 RLG00000027511 RLG00000027512
rosa_roxburghii	Rroxscaffold_4G00292590
rosa_rugosa	Rorug01G0314100
rosa_samantha	Rh1AG321400
rosa_wichuraiana	Rw1G028510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	362, 1040
AciI	CCGC	3 cut(s)	343, 375, 1497
AclWI	GGATC	2 cut(s)	257, 270
AcsI	RAATTY	3 cut(s)	191, 632, 908
AcuI	CTGAAG	3 cut(s)	71, 96, 198
AcvI	CACGTG	1 cut(s)	761
AfiI	CCNNNNNNNGG	1 cut(s)	1259
AflIII	ACRYGT	1 cut(s)	1488
AgsI	TTSAA	9 cut(s)	298, 332, 407, 693, 783, 973, 1292, 1537, 1550
AhlI	ACTAGT	1 cut(s)	245
AjnI	CCWGG	4 cut(s)	58, 250, 853, 1477
Alw21I	GWGCWC	2 cut(s)	1422, 1608
Alw26I	GTCTC	4 cut(s)	519, 1211, 1241, 1344
AlwI	GGATC	2 cut(s)	257, 270
Ama87I	CYCGRG	1 cut(s)	516
ApeKI	GCWGC	6 cut(s)	82, 617, 698, 755, 866, 935
ApoI	RAATTY	3 cut(s)	191, 632, 908
AspS9I	GGNCC	3 cut(s)	345, 711, 1080
AsuHPI	GGTGA	4 cut(s)	532, 843, 1157, 1242
AvaI	CYCGRG	1 cut(s)	516
AvaII	GGWCC	3 cut(s)	345, 711, 1080
AxyI	CCTNAGG	2 cut(s)	267, 1231
BamHI	GGATCC	1 cut(s)	262
BanII	GRGCYC	3 cut(s)	1422, 1464, 1608
BbrPI	CACGTG	1 cut(s)	761
Bbv12I	GWGCWC	2 cut(s)	1422, 1608
BbvCI	CCTCAGC	1 cut(s)	535
BbvI	GCAGC	6 cut(s)	69, 604, 685, 742, 853, 922
BccI	CCATC	7 cut(s)	13, 733, 844, 1067, 1255, 1388, 1594
BcgI	CGANNNNNNTGC	2 cut(s)	917, 951
BciT130I	CCWGG	4 cut(s)	60, 252, 855, 1479
BcoDI	GTCTC	4 cut(s)	519, 1211, 1241, 1344
BcuI	ACTAGT	1 cut(s)	245
BfaI	CTAG	4 cut(s)	246, 398, 447, 879
BfmI	CTRYAG	3 cut(s)	108, 202, 279
BglI	GCCNNNNNGGC	1 cut(s)	1157
BglII	AGATCT	1 cut(s)	1115
BisI	GCNGC	7 cut(s)	83, 376, 618, 699, 756, 867, 936
BlpI	GCTNAGC	1 cut(s)	220
BlsI	GCNGC	7 cut(s)	84, 377, 619, 700, 757, 868, 937
Bme1390I	CCNGG	4 cut(s)	60, 252, 855, 1479
Bme18I	GGWCC	3 cut(s)	345, 711, 1080
BmeT110I	CYCGRG	1 cut(s)	516
BmgT120I	GGNCC	3 cut(s)	345, 711, 1080
BmiI	GGNNCC	4 cut(s)	72, 174, 184, 264
BmrFI	CCNGG	4 cut(s)	60, 252, 855, 1479
BmsI	GCATC	5 cut(s)	496, 548, 656, 1138, 1169
BpmI	CTGGAG	3 cut(s)	123, 846, 1500
Bpu10I	CCTNAGC	1 cut(s)	535
Bpu1102I	GCTNAGC	1 cut(s)	220
BpuEI	CTTGAG	3 cut(s)	817, 883, 1406
BsaAI	YACGTR	1 cut(s)	761
BsaI	GGTCTC	1 cut(s)	1241
BsaJI	CCNNGG	2 cut(s)	251, 348
BsaXI	ACNNNNNCTCC	2 cut(s)	344, 374
Bsc4I	CCNNNNNNNGG	1 cut(s)	1259
Bse1I	ACTGG	1 cut(s)	810
Bse21I	CCTNAGG	2 cut(s)	267, 1231
Bse3DI	GCAATG	1 cut(s)	121
BseBI	CCWGG	4 cut(s)	60, 252, 855, 1479
BseDI	CCNNGG	2 cut(s)	251, 348
BseGI	GGATG	4 cut(s)	539, 636, 806, 836
BseLI	CCNNNNNNNGG	1 cut(s)	1259
BseMI	GCAATG	1 cut(s)	121
BseMII	CTCAG	7 cut(s)	258, 297, 549, 1098, 1169, 1245, 1621
BseNI	ACTGG	1 cut(s)	810
BseRI	GAGGAG	2 cut(s)	1042, 1289
BseXI	GCAGC	6 cut(s)	69, 604, 685, 742, 853, 922
BsgI	GTGCAG	2 cut(s)	741, 1430
BsiHKAI	GWGCWC	2 cut(s)	1422, 1608
BsiHKCI	CYCGRG	1 cut(s)	516
BslI	CCNNNNNNNGG	1 cut(s)	1259
BsmAI	GTCTC	4 cut(s)	519, 1211, 1241, 1344
BsmBI	CGTCTC	1 cut(s)	519
BsmI	GAATGC	1 cut(s)	1445
Bso31I	GGTCTC	1 cut(s)	1241
BsoBI	CYCGRG	1 cut(s)	516
Bsp1286I	GDGCHC	3 cut(s)	1422, 1464, 1608
Bsp143I	GATC	4 cut(s)	262, 1115, 1213, 1579
Bsp1720I	GCTNAGC	1 cut(s)	220
BspACI	CCGC	3 cut(s)	343, 375, 1497
BspCNI	CTCAG	7 cut(s)	259, 298, 548, 1097, 1168, 1244, 1620
BspLI	GGNNCC	4 cut(s)	72, 174, 184, 264
BspPI	GGATC	2 cut(s)	257, 270
BspQI	GCTCTTC	2 cut(s)	72, 1452
BspTNI	GGTCTC	1 cut(s)	1241
BsrDI	GCAATG	1 cut(s)	121
BsrI	ACTGG	1 cut(s)	810
BssECI	CCNNGG	2 cut(s)	251, 348
BssMI	GATC	4 cut(s)	262, 1115, 1213, 1579
Bst2UI	CCWGG	4 cut(s)	60, 252, 855, 1479
Bst4CI	ACNGT	2 cut(s)	1045, 1171
Bst6I	CTCTTC	3 cut(s)	72, 694, 1452
BstAPI	GCANNNNNTGC	1 cut(s)	755
BstBAI	YACGTR	1 cut(s)	761
BstC8I	GCNNGC	4 cut(s)	394, 444, 615, 1307
BstDEI	CTNAG	8 cut(s)	220, 267, 306, 535, 1084, 1155, 1231, 1607
BstDSI	CCRYGG	1 cut(s)	348
BstF5I	GGATG	4 cut(s)	539, 636, 806, 836
BstKTI	GATC	4 cut(s)	265, 1118, 1216, 1582
BstMAI	GTCTC	4 cut(s)	519, 1211, 1241, 1344
BstMBI	GATC	4 cut(s)	262, 1115, 1213, 1579
BstMWI	GCNNNNNNNGC	4 cut(s)	755, 1157, 1417, 1631
BstNI	CCWGG	4 cut(s)	60, 252, 855, 1479
BstNSI	RCATGY	2 cut(s)	1309, 1492
BstSCI	CCNGG	4 cut(s)	58, 250, 853, 1477
BstSFI	CTRYAG	3 cut(s)	108, 202, 279
BstV1I	GCAGC	6 cut(s)	69, 604, 685, 742, 853, 922
BstX2I	RGATCY	2 cut(s)	262, 1115
BstYI	RGATCY	2 cut(s)	262, 1115
Bsu36I	CCTNAGG	2 cut(s)	267, 1231
BtgI	CCRYGG	1 cut(s)	348
BtsCI	GGATG	4 cut(s)	539, 636, 806, 836
Cac8I	GCNNGC	4 cut(s)	394, 444, 615, 1307
Cfr13I	GGNCC	3 cut(s)	345, 711, 1080
CsiI	ACCWGGT	1 cut(s)	853
CviAII	CATG	4 cut(s)	952, 1306, 1489, 1631
DdeI	CTNAG	8 cut(s)	220, 267, 306, 535, 1084, 1155, 1231, 1607
DpnI	GATC	4 cut(s)	264, 1117, 1215, 1581
DpnII	GATC	4 cut(s)	262, 1115, 1213, 1579
DraI	TTTAAA	1 cut(s)	582
Eam1104I	CTCTTC	3 cut(s)	72, 694, 1452
EarI	CTCTTC	3 cut(s)	72, 694, 1452
Ecl136II	GAGCTC	2 cut(s)	1420, 1606
Eco24I	GRGCYC	3 cut(s)	1422, 1464, 1608
Eco31I	GGTCTC	1 cut(s)	1241
Eco47I	GGWCC	3 cut(s)	345, 711, 1080
Eco53kI	GAGCTC	2 cut(s)	1420, 1606
Eco57I	CTGAAG	3 cut(s)	71, 96, 198
Eco72I	CACGTG	1 cut(s)	761
Eco81I	CCTNAGG	2 cut(s)	267, 1231
Eco88I	CYCGRG	1 cut(s)	516
EcoICRI	GAGCTC	2 cut(s)	1420, 1606
EcoO109I	RGGNCCY	1 cut(s)	711
EcoRII	CCWGG	4 cut(s)	58, 250, 853, 1477
EcoT38I	GRGCYC	3 cut(s)	1422, 1464, 1608
Esp3I	CGTCTC	1 cut(s)	519
FaeI	CATG	4 cut(s)	955, 1309, 1492, 1634
FalI	AAGNNNNNCTT	6 cut(s)	69, 101, 700, 732, 1247, 1279
FatI	CATG	4 cut(s)	951, 1305, 1488, 1630
FblI	GTMKAC	2 cut(s)	362, 1040
Fnu4HI	GCNGC	7 cut(s)	83, 376, 618, 699, 756, 867, 936
FokI	GGATG	4 cut(s)	526, 623, 793, 823
FriOI	GRGCYC	3 cut(s)	1422, 1464, 1608
Fsp4HI	GCNGC	7 cut(s)	83, 376, 618, 699, 756, 867, 936
FspBI	CTAG	4 cut(s)	246, 398, 447, 879
GluI	GCNGC	7 cut(s)	83, 376, 618, 699, 756, 867, 936
GsuI	CTGGAG	3 cut(s)	123, 846, 1500
Hin1II	CATG	4 cut(s)	955, 1309, 1492, 1634
HincII	GTYRAC	1 cut(s)	124
HindII	GTYRAC	1 cut(s)	124
HindIII	AAGCTT	3 cut(s)	13, 1370, 1551
HpaI	GTTAAC	1 cut(s)	124
HphI	GGTGA	4 cut(s)	532, 843, 1157, 1242
HpyAV	CCTTC	5 cut(s)	55, 168, 173, 462, 1408
HpyCH4III	ACNGT	2 cut(s)	1045, 1171
HpyCH4IV	ACGT	1 cut(s)	760
HpyF10VI	GCNNNNNNNGC	4 cut(s)	755, 1157, 1417, 1631
HpyF3I	CTNAG	8 cut(s)	220, 267, 306, 535, 1084, 1155, 1231, 1607
HpySE526I	ACGT	1 cut(s)	760
Hsp92II	CATG	4 cut(s)	955, 1309, 1492, 1634
KspAI	GTTAAC	1 cut(s)	124
Kzo9I	GATC	4 cut(s)	262, 1115, 1213, 1579
LguI	GCTCTTC	2 cut(s)	72, 1452
LmnI	GCTCC	4 cut(s)	104, 172, 1417, 1603
Lsp1109I	GCAGC	6 cut(s)	69, 604, 685, 742, 853, 922
LweI	GCATC	5 cut(s)	496, 548, 656, 1138, 1169
MabI	ACCWGGT	1 cut(s)	853
MaeI	CTAG	4 cut(s)	246, 398, 447, 879
MaeII	ACGT	1 cut(s)	760
MaeIII	GTNAC	5 cut(s)	309, 426, 817, 849, 1511
MalI	GATC	4 cut(s)	264, 1117, 1215, 1581
MboI	GATC	4 cut(s)	262, 1115, 1213, 1579
MboII	GAAGA	8 cut(s)	40, 89, 155, 535, 681, 915, 1267, 1469
MflI	RGATCY	2 cut(s)	262, 1115
MhlI	GDGCHC	3 cut(s)	1422, 1464, 1608
MluCI	AATT	6 cut(s)	191, 272, 422, 632, 908, 1545
MlyI	GAGTC	6 cut(s)	72, 173, 317, 368, 769, 1117
MmeI	TCCRAC	1 cut(s)	1162
MseI	TTAA	8 cut(s)	123, 558, 581, 654, 681, 947, 1374, 1556
MspA1I	CMGCKG	3 cut(s)	698, 866, 1497
MspR9I	CCNGG	4 cut(s)	60, 252, 855, 1479
Mva1269I	GAATGC	1 cut(s)	1445
MvaI	CCWGG	4 cut(s)	60, 252, 855, 1479
MwoI	GCNNNNNNNGC	4 cut(s)	755, 1157, 1417, 1631
NdeII	GATC	4 cut(s)	262, 1115, 1213, 1579
NlaIII	CATG	4 cut(s)	955, 1309, 1492, 1634
NlaIV	GGNNCC	4 cut(s)	72, 174, 184, 264
NmuCI	GTSAC	4 cut(s)	309, 817, 849, 1511
NspI	RCATGY	2 cut(s)	1309, 1492
PaeI	GCATGC	1 cut(s)	1309
PciI	ACATGT	1 cut(s)	1488
PciSI	GCTCTTC	2 cut(s)	72, 1452
PctI	GAATGC	1 cut(s)	1445
PfeI	GAWTC	5 cut(s)	294, 884, 969, 1013, 1088
PfoI	TCCNGGA	2 cut(s)	58, 1477
PkrI	GCNGC	7 cut(s)	84, 377, 619, 700, 757, 868, 937
PleI	GAGTC	6 cut(s)	71, 172, 316, 367, 769, 1116
PmaCI	CACGTG	1 cut(s)	761
PmlI	CACGTG	1 cut(s)	761
PpsI	GAGTC	6 cut(s)	71, 172, 316, 367, 769, 1116
Ppu21I	YACGTR	1 cut(s)	761
PpuMI	RGGWCCY	1 cut(s)	711
PscI	ACATGT	1 cut(s)	1488
Psp124BI	GAGCTC	2 cut(s)	1422, 1608
Psp5II	RGGWCCY	1 cut(s)	711
Psp6I	CCWGG	4 cut(s)	58, 250, 853, 1477
PspCI	CACGTG	1 cut(s)	761
PspGI	CCWGG	4 cut(s)	58, 250, 853, 1477
PspN4I	GGNNCC	4 cut(s)	72, 174, 184, 264
PspPI	GGNCC	3 cut(s)	345, 711, 1080
PspPPI	RGGWCCY	1 cut(s)	711
PsuI	RGATCY	2 cut(s)	262, 1115
PvuII	CAGCTG	2 cut(s)	698, 866
SacI	GAGCTC	2 cut(s)	1422, 1608
SapI	GCTCTTC	2 cut(s)	72, 1452
SaqAI	TTAA	8 cut(s)	123, 558, 581, 654, 681, 947, 1374, 1556
SatI	GCNGC	7 cut(s)	83, 376, 618, 699, 756, 867, 936
Sau3AI	GATC	4 cut(s)	262, 1115, 1213, 1579
Sau96I	GGNCC	3 cut(s)	345, 711, 1080
SchI	GAGTC	6 cut(s)	72, 173, 317, 368, 769, 1117
ScrFI	CCNGG	4 cut(s)	60, 252, 855, 1479
SduI	GDGCHC	3 cut(s)	1422, 1464, 1608
SexAI	ACCWGGT	1 cut(s)	853
SfaNI	GCATC	5 cut(s)	496, 548, 656, 1138, 1169
SfcI	CTRYAG	3 cut(s)	108, 202, 279
SinI	GGWCC	3 cut(s)	345, 711, 1080
SmlI	CTYRAG	3 cut(s)	796, 898, 1421
SmoI	CTYRAG	3 cut(s)	796, 898, 1421
SpeI	ACTAGT	1 cut(s)	245
SphI	GCATGC	1 cut(s)	1309
Sse9I	AATT	6 cut(s)	191, 272, 422, 632, 908, 1545
SsiI	CCGC	3 cut(s)	343, 375, 1497
SspMI	CTAG	4 cut(s)	246, 398, 447, 879
SstI	GAGCTC	2 cut(s)	1422, 1608
StyD4I	CCNGG	4 cut(s)	58, 250, 853, 1477
TaaI	ACNGT	2 cut(s)	1045, 1171
TaiI	ACGT	1 cut(s)	763
TaqI	TCGA	3 cut(s)	211, 773, 996
TasI	AATT	6 cut(s)	191, 272, 422, 632, 908, 1545
TauI	GCSGC	1 cut(s)	378
TfiI	GAWTC	5 cut(s)	294, 884, 969, 1013, 1088
Tru1I	TTAA	8 cut(s)	123, 558, 581, 654, 681, 947, 1374, 1556
Tru9I	TTAA	8 cut(s)	123, 558, 581, 654, 681, 947, 1374, 1556
TseFI	GTSAC	4 cut(s)	309, 817, 849, 1511
TseI	GCWGC	6 cut(s)	82, 617, 698, 755, 866, 935
Tsp45I	GTSAC	4 cut(s)	309, 817, 849, 1511
TspDTI	ATGAA	9 cut(s)	542, 625, 795, 908, 1005, 1163, 1238, 1304, 1470
TspGWI	ACGGA	1 cut(s)	365
VpaK11BI	GGWCC	3 cut(s)	345, 711, 1080
XapI	RAATTY	3 cut(s)	191, 632, 908
XceI	RCATGY	2 cut(s)	1309, 1492
XmiI	GTMKAC	2 cut(s)	362, 1040
XspI	CTAG	4 cut(s)	246, 398, 447, 879

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.