Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0005276

Physical Location & Seq

Genomic Coordinates Forward (+)

25003535 .. 25004592

Gene Structure 1058 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G222400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGCCCCTACCATGGTGGTTCTGTGAAAATACTTGCTCTCAAAGCGACGACTTGAAGAGTGTACTCTCTGATTTCACCCTCCCTACAGATTCCGATCAGCCTCGGGACTGGTTGACCATCCTAAAGAATGTGGAAAGGCTTGAGACTATGGATGAGGAAGTTTTGACAGAAATATGTGGGTATCTTGAGCTCAGAACTTATGAAGATGCGTACATTATTCAAAAGGATAAACTAATCGAAATGATGTTCTTCATCATGAGAGGAGTTGTGTCAGTGACAGACGGGAGCTCGAAACATTACCGCAATGAAGGAGGACGTCCAAATCACAGTGGAGATGACCTCATAGAACATTGGCTACAATCTAAATCTACCAGCGTTCCTGCCAAATTGCCCACCTCTCCTTTTAGTTTTTGGGCCATTGGTGAAGTTGAAGTTCTGGTTCTTAAGGCCGAGGACATGGCAAAGGTTCAGCCTGGTGATCATATTCGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

cNMP_binding

Protein Analysis

164

Amino Acids

18.73

Weight (kDa)

4.66

Isoelectric Point (pI)

49.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005276)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g20180 FvH4_7g20190 FvH4_7g20190 FvH4_7g20190 FvH4_7g20221
malus_domestica	MD01G1131600.v1.1 MD07G1179700.v1.1
prunus_persica	Prupe.2G219100_v2.0.a1 Prupe.2G219100_v2.0.a1 Prupe.2G222400_v2.0.a1 Prupe.2G222500_v2.0.a1 Prupe.2G222500_v2.0.a1 Prupe.2G222500_v2.0.a1 Prupe.2G222600_v2.0.a1 Prupe.2G222600_v2.0.a1 Prupe.2G222600_v2.0.a1 Prupe.2G222800_v2.0.a1 Prupe.2G222900_v2.0.a1 Prupe.2G223000_v2.0.a1
pyrus_communis	pycom01g14040 pycom07g17320
rosa_chinensis	RchiOBHm_Chr1g0364171
rosa_laevigata	RLG00000027510 RLG00000027511 RLG00000027512
rosa_roxburghii	Rroxscaffold_4G00292590
rosa_rugosa	Rorug01G0314100
rosa_samantha	Rh1AG321400
rosa_wichuraiana	Rw1G028510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	319
AciI	CCGC	1 cut(s)	301
AcyI	GRCGYC	1 cut(s)	316
AfaI	GTAC	2 cut(s)	63, 212
AfiI	CCNNNNNNNGG	1 cut(s)	12
AflII	CTTAAG	1 cut(s)	443
AgsI	TTSAA	3 cut(s)	55, 221, 431
AjnI	CCWGG	1 cut(s)	472
AluBI	AGCT	2 cut(s)	190, 288
AluI	AGCT	2 cut(s)	190, 288
Alw21I	GWGCWC	2 cut(s)	192, 290
Alw26I	GTCTC	1 cut(s)	137
Ama87I	CYCGRG	1 cut(s)	102
AoxI	GGCC	2 cut(s)	414, 447
AspS9I	GGNCC	1 cut(s)	414
AsuHPI	GGTGA	3 cut(s)	67, 434, 488
AvaI	CYCGRG	1 cut(s)	102
BanII	GRGCYC	2 cut(s)	192, 290
Bbv12I	GWGCWC	2 cut(s)	192, 290
BccI	CCATC	1 cut(s)	125
BciT130I	CCWGG	1 cut(s)	474
BclI	TGATCA	1 cut(s)	478
BcoDI	GTCTC	1 cut(s)	137
BfmI	CTRYAG	1 cut(s)	84
BfrI	CTTAAG	1 cut(s)	443
Bme1390I	CCNGG	1 cut(s)	474
BmeT110I	CYCGRG	1 cut(s)	102
BmgT120I	GGNCC	1 cut(s)	414
BmrFI	CCNGG	1 cut(s)	474
BmsI	GCATC	1 cut(s)	196
BplI	GAGNNNNNCTC	2 cut(s)	324, 356
BpuEI	CTTGAG	2 cut(s)	161, 206
BsaBI	GATNNNNATC	1 cut(s)	93
BsaHI	GRCGYC	1 cut(s)	316
BsaJI	CCNNGG	3 cut(s)	11, 101, 450
Bsc4I	CCNNNNNNNGG	1 cut(s)	12
Bse1I	ACTGG	1 cut(s)	113
Bse3DI	GCAATG	1 cut(s)	310
Bse8I	GATNNNNATC	1 cut(s)	93
BseBI	CCWGG	1 cut(s)	474
BseDI	CCNNGG	3 cut(s)	11, 101, 450
BseGI	GGATG	2 cut(s)	117, 157
BseJI	GATNNNNATC	1 cut(s)	93
BseLI	CCNNNNNNNGG	1 cut(s)	12
BseMI	GCAATG	1 cut(s)	310
BseMII	CTCAG	1 cut(s)	205
BseNI	ACTGG	1 cut(s)	113
BseRI	GAGGAG	1 cut(s)	276
BshFI	GGCC	2 cut(s)	416, 449
BsiHKAI	GWGCWC	2 cut(s)	192, 290
BsiHKCI	CYCGRG	1 cut(s)	102
BslFI	GGGAC	1 cut(s)	119
BslI	CCNNNNNNNGG	1 cut(s)	12
BsmAI	GTCTC	1 cut(s)	137
BsmFI	GGGAC	1 cut(s)	119
BsnI	GGCC	2 cut(s)	416, 449
BsoBI	CYCGRG	1 cut(s)	102
Bsp1286I	GDGCHC	2 cut(s)	192, 290
Bsp143I	GATC	2 cut(s)	94, 478
Bsp19I	CCATGG	1 cut(s)	11
BspACI	CCGC	1 cut(s)	301
BspANI	GGCC	2 cut(s)	416, 449
BspCNI	CTCAG	1 cut(s)	204
BspHI	TCATGA	1 cut(s)	255
BspTI	CTTAAG	1 cut(s)	443
BsrDI	GCAATG	1 cut(s)	310
BsrI	ACTGG	1 cut(s)	113
BssECI	CCNNGG	3 cut(s)	11, 101, 450
BssMI	GATC	2 cut(s)	94, 478
BssNI	GRCGYC	1 cut(s)	316
BssT1I	CCWWGG	1 cut(s)	11
Bst2UI	CCWGG	1 cut(s)	474
Bst4CI	ACNGT	1 cut(s)	329
Bst6I	CTCTTC	1 cut(s)	50
BstACI	GRCGYC	1 cut(s)	316
BstAFI	CTTAAG	1 cut(s)	443
BstDEI	CTNAG	1 cut(s)	191
BstDSI	CCRYGG	1 cut(s)	11
BstF5I	GGATG	2 cut(s)	117, 157
BstKTI	GATC	2 cut(s)	97, 481
BstMAI	GTCTC	1 cut(s)	137
BstMBI	GATC	2 cut(s)	94, 478
BstMWI	GCNNNNNNNGC	1 cut(s)	42
BstNI	CCWGG	1 cut(s)	474
BstSCI	CCNGG	1 cut(s)	472
BstSFI	CTRYAG	1 cut(s)	84
BsuRI	GGCC	2 cut(s)	416, 449
BtgI	CCRYGG	1 cut(s)	11
BtsCI	GGATG	2 cut(s)	117, 157
BtsIMutI	CAGTG	2 cut(s)	279, 334
CciI	TCATGA	1 cut(s)	255
Cfr13I	GGNCC	1 cut(s)	414
Csp6I	GTAC	2 cut(s)	62, 211
CviAII	CATG	3 cut(s)	12, 256, 457
CviJI	RGCY	8 cut(s)	100, 139, 190, 288, 355, 416, 449, 472
CviKI_1	RGCY	8 cut(s)	100, 139, 190, 288, 355, 416, 449, 472
CviQI	GTAC	2 cut(s)	62, 211
DdeI	CTNAG	1 cut(s)	191
DpnI	GATC	2 cut(s)	96, 480
DpnII	GATC	2 cut(s)	94, 478
Eam1104I	CTCTTC	1 cut(s)	50
EarI	CTCTTC	1 cut(s)	50
Ecl136II	GAGCTC	2 cut(s)	190, 288
Eco130I	CCWWGG	1 cut(s)	11
Eco24I	GRGCYC	2 cut(s)	192, 290
Eco53kI	GAGCTC	2 cut(s)	190, 288
Eco88I	CYCGRG	1 cut(s)	102
EcoICRI	GAGCTC	2 cut(s)	190, 288
EcoRII	CCWGG	1 cut(s)	472
EcoT14I	CCWWGG	1 cut(s)	11
EcoT38I	GRGCYC	2 cut(s)	192, 290
ErhI	CCWWGG	1 cut(s)	11
FaeI	CATG	3 cut(s)	15, 259, 460
FaiI	YATR	8 cut(s)	13, 149, 175, 201, 257, 344, 458, 483
FaqI	GGGAC	1 cut(s)	119
FatI	CATG	3 cut(s)	11, 255, 456
FbaI	TGATCA	1 cut(s)	478
FokI	GGATG	2 cut(s)	104, 164
FriOI	GRGCYC	2 cut(s)	192, 290
HaeIII	GGCC	2 cut(s)	416, 449
Hin1I	GRCGYC	1 cut(s)	316
Hin1II	CATG	3 cut(s)	15, 259, 460
HincII	GTYRAC	1 cut(s)	114
HindII	GTYRAC	1 cut(s)	114
HinfI	GANTC	1 cut(s)	89
HphI	GGTGA	3 cut(s)	67, 434, 488
Hpy166II	GTNNAC	2 cut(s)	62, 114
Hpy188I	TCNGA	3 cut(s)	70, 94, 194
Hpy188III	TCNNGA	3 cut(s)	104, 185, 256
Hpy8I	GTNNAC	2 cut(s)	62, 114
Hpy99I	CGWCG	1 cut(s)	50
HpyAV	CCTTC	1 cut(s)	302
HpyCH4III	ACNGT	1 cut(s)	329
HpyCH4IV	ACGT	1 cut(s)	316
HpyF10VI	GCNNNNNNNGC	1 cut(s)	42
HpyF3I	CTNAG	1 cut(s)	191
HpySE526I	ACGT	1 cut(s)	316
Hsp92I	GRCGYC	1 cut(s)	316
Hsp92II	CATG	3 cut(s)	15, 259, 460
Ksp22I	TGATCA	1 cut(s)	478
Kzo9I	GATC	2 cut(s)	94, 478
LmnI	GCTCC	1 cut(s)	285
LpnPI	CCDG	6 cut(s)	94, 385, 393, 422, 459, 486
LweI	GCATC	1 cut(s)	196
MaeII	ACGT	1 cut(s)	316
MaeIII	GTNAC	1 cut(s)	274
MalI	GATC	2 cut(s)	96, 480
MboI	GATC	2 cut(s)	94, 478
MboII	GAAGA	3 cut(s)	67, 215, 241
MhlI	GDGCHC	2 cut(s)	192, 290
MluCI	AATT	1 cut(s)	386
MnlI	CCTC	8 cut(s)	89, 111, 148, 254, 305, 350, 406, 445
MseI	TTAA	1 cut(s)	444
MspCI	CTTAAG	1 cut(s)	443
MspR9I	CCNGG	1 cut(s)	474
MvaI	CCWGG	1 cut(s)	474
MwoI	GCNNNNNNNGC	1 cut(s)	42
NcoI	CCATGG	1 cut(s)	11
NdeII	GATC	2 cut(s)	94, 478
NlaIII	CATG	3 cut(s)	15, 259, 460
NmeAIII	GCCGAG	1 cut(s)	475
NmuCI	GTSAC	1 cut(s)	274
PagI	TCATGA	1 cut(s)	255
PfeI	GAWTC	1 cut(s)	89
Psp124BI	GAGCTC	2 cut(s)	192, 290
Psp6I	CCWGG	1 cut(s)	472
PspGI	CCWGG	1 cut(s)	472
PspPI	GGNCC	1 cut(s)	414
PsrI	GAACNNNNNNTAC	2 cut(s)	339, 371
RsaI	GTAC	2 cut(s)	63, 212
RsaNI	GTAC	2 cut(s)	62, 211
SacI	GAGCTC	2 cut(s)	192, 290
SaqAI	TTAA	1 cut(s)	444
Sau3AI	GATC	2 cut(s)	94, 478
Sau96I	GGNCC	1 cut(s)	414
ScrFI	CCNGG	1 cut(s)	474
SduI	GDGCHC	2 cut(s)	192, 290
SetI	ASST	6 cut(s)	192, 290, 319, 342, 398, 468
SfaNI	GCATC	1 cut(s)	196
SfcI	CTRYAG	1 cut(s)	84
SmlI	CTYRAG	3 cut(s)	140, 185, 443
SmoI	CTYRAG	3 cut(s)	140, 185, 443
Sse9I	AATT	1 cut(s)	386
SsiI	CCGC	1 cut(s)	301
SstI	GAGCTC	2 cut(s)	192, 290
StyD4I	CCNGG	1 cut(s)	472
StyI	CCWWGG	1 cut(s)	11
TaaI	ACNGT	1 cut(s)	329
TaiI	ACGT	1 cut(s)	319
TaqI	TCGA	2 cut(s)	237, 290
TasI	AATT	1 cut(s)	386
TatI	WGTACW	1 cut(s)	61
TfiI	GAWTC	1 cut(s)	89
Tru1I	TTAA	1 cut(s)	444
Tru9I	TTAA	1 cut(s)	444
TscAI	CASTG	2 cut(s)	279, 334
TseFI	GTSAC	1 cut(s)	274
Tsp45I	GTSAC	1 cut(s)	274
TspDTI	ATGAA	3 cut(s)	216, 241, 321
TspRI	CASTG	2 cut(s)	279, 334
Vha464I	CTTAAG	1 cut(s)	443
ZraI	GACGTC	1 cut(s)	317

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.