MD07G1179700.v1.1

No description available

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
Physical Location & Seq
Reverse (-)
25907712 .. 25910072
2361 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1179700.v1.1.491

Sequence Viewer

Length: 1584 bp
ATGTCCTCCAATGGCGATTTTCAACAACTTGGCTTCCCAGATAACAGGGAGAAGCTTGATGGGTCTGGACTGTTTAAGACTGGGAGTCCACAGGACACCAAGAATCCCAAGTTTAATGTCCGAAAGAGTTTGGCTTGGGACAGTGCCTTCTTCACAAGTCCAGTTTTGGAGCCTGAGGAGCTGCTTCAGACTATGAATTCTCAAACTACAGGCAACGCCGTTAACTTCTTGGGGTATGAGGAAGCAATGCTATTGCCTTCGGAGTCTTTGGAACCCGAAAGAACACGAAGAATTAACCGGTGTAGCTTTCGAAAAAGTTTAGCTTGGGATAATGCCTTTTTCACTTCTGCAGGGGTTTTGGATCCTGAGGAGTTGTGTATAGTTAACAGAGGATTCAAGAAATCTGAAAAGCATCAGCTTCCCAGGATTCAAGAAGTTTTGAGGTCTGCTGAGTCAATGTCCACAGTTGATAGTGGATGGTCCTCTTTGATGGCAAGCCTTGAGTTTGAACTTTTCGAAGAAAACAGATCATCTGCGCAGAAACCGACTAGTTTATCGGGTCACACAACTTCAAGTCTCAAATCAAAAAGAGGAAAAGGCCTGCAAAGTGTCCGCCCTTCCAAGAATCCTGATGCTTGTCCTCGGATGAGGGATGAATATGTCTGTTTTGGAATTCAGATGAGAGCTAGTATGCCAACATCAGAAAGGCAAAGTCTAAATGCGCGTGGAACGGAGAAGATTTTAAAGGAGGCTTCTGCTTTCTCACAAAAACAGCTTACCGCTGGAAAATTGAACTCATCAACATCTCGCAAACCGCCAAAGATATCTAGCCGGGTTAACCAATCTTATACACCTGCAGCGAAAAGGGCTTGTTCCGGTGGAAATAATGAAAAAATGGGAACTGCAAAGGCTGCACCTGGACAATCTATGAATGTGTCAAAAAAACCTTGCTTAAGCGCATCATGCAGCATCACCAATAGTCTTACACCGCCCCAAAAGACATCTCCATTATGTTCTCCCACTACCACACATGAGTCTCGGGTTTACAGTTCTCCCTTATTCGGTAAATCTCCATTGTATTCGAGGAGCAAAATTGATTCCTCACTTGTCAATTCAGCCTCCCGTGGTTTTACGATGGGAACTCCTTCGAAATCCACAAAGAAAAACAAAGGTGAACTCGAAACTTCTTGGCAGCCTTCTACTCTATTGTGCACGCCAAAGTCTTCCCCTTATACATCACCTGCTAGTTCCTTTGATGGCTGGTCCTCAGCATCATCATCAGCATCTGCGAATCAAAGATGGAAGAAGTCTGAGGTCGGCATGAATACTTTCATCAGCGGACAGGCTTCTTTTGAGAGTGATATCTCTCAGGAATCAATTCTGGAGAGCCATTCACAGGATCAACCCAGCATTGGACATGGAAATCAAGCACGCGATGGAAATATGTCAACAGGAAGTACCCCTATTCCTAGCAGTGTTTCTAAACATATCAAGCCCTCATGTCTCCGAGCACCATCACCAAAGATTGGCTTTTTTGACGAGGTTAGTTCACTTCATATGGATTCTTCATTATTCTTGTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

528

Amino Acids

57.38

Weight (kDa)

9.39

Isoelectric Point (pI)

60.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 862, 1249
Acc16I TGCGCA 1 cut(s) 537
Acc36I ACCTGC 2 cut(s) 862, 1249
AccB7I CCANNNNNTGG 1 cut(s) 1526
AccII CGCG 2 cut(s) 724, 1434
AciI CCGC 5 cut(s) 613, 780, 815, 989, 1338
AclWI GGATC 3 cut(s) 356, 369, 1407
AcsI RAATTY 2 cut(s) 196, 672
AcuI CTGAAG 1 cut(s) 170
AfaI GTAC 2 cut(s) 1459, 1580
AfiI CCNNNNNNNGG 4 cut(s) 1061, 1396, 1412, 1526
AflII CTTAAG 1 cut(s) 952
AgeI ACCGGT 1 cut(s) 297
AgsI TTSAA 6 cut(s) 23, 397, 431, 509, 573, 793
AhdI GACNNNNNGTC 1 cut(s) 84
AhlI ACTAGT 1 cut(s) 548
AjnI CCWGG 2 cut(s) 422, 916
AluBI AGCT 7 cut(s) 55, 181, 306, 323, 418, 686, 775
AluI AGCT 7 cut(s) 55, 181, 306, 323, 418, 686, 775
Alw21I GWGCWC 2 cut(s) 1214, 1513
Alw26I GTCTC 3 cut(s) 581, 1041, 1508
Alw44I GTGCAC 1 cut(s) 1210
AlwI GGATC 3 cut(s) 356, 369, 1407
AlwNI CAGNNNCTG 1 cut(s) 1286
Ama87I CYCGRG 1 cut(s) 1038
AoxI GGCC 1 cut(s) 598
ApaLI GTGCAC 1 cut(s) 1210
ApeKI GCWGC 5 cut(s) 181, 857, 911, 966, 1192
ApoI RAATTY 2 cut(s) 196, 672
AsiGI ACCGGT 1 cut(s) 297
Asp700I GAANNNNTTC 3 cut(s) 1144, 1328, 1377
AspLEI GCGC 3 cut(s) 538, 724, 959
AspS9I GGNCC 2 cut(s) 480, 1263
AsuC2I CCSGG 1 cut(s) 833
AsuHPI GGTGA 4 cut(s) 964, 1184, 1230, 1509
AsuII TTCGAA 3 cut(s) 310, 516, 1148
AvaI CYCGRG 1 cut(s) 1038
AvaII GGWCC 2 cut(s) 480, 1263
AxyI CCTNAGG 2 cut(s) 174, 366
BaeGI GKGCMC 1 cut(s) 1214
BamHI GGATCC 1 cut(s) 361
BbsI GAAGAC 1 cut(s) 1215
Bbv12I GWGCWC 2 cut(s) 1214, 1513
BbvCI CCTCAGC 1 cut(s) 1267
BbvI GCAGC 5 cut(s) 168, 869, 898, 978, 1204
BccI CCATC 8 cut(s) 53, 471, 484, 1129, 1250, 1293, 1430, 1522
BceAI ACGGC 1 cut(s) 203
BciT130I CCWGG 2 cut(s) 424, 918
BcnI CCSGG 1 cut(s) 833
BcoDI GTCTC 3 cut(s) 581, 1041, 1508
BcuI ACTAGT 1 cut(s) 548
BfaI CTAG 5 cut(s) 549, 687, 828, 1245, 1470
BfmI CTRYAG 3 cut(s) 207, 348, 855
BfrI CTTAAG 1 cut(s) 952
BfuAI ACCTGC 2 cut(s) 862, 1249
BisI GCNGC 5 cut(s) 182, 858, 912, 967, 1193
BlsI GCNGC 5 cut(s) 183, 859, 913, 968, 1194
Bme1390I CCNGG 3 cut(s) 424, 833, 918
Bme18I GGWCC 2 cut(s) 480, 1263
BmeRI GACNNNNNGTC 1 cut(s) 84
BmeT110I CYCGRG 1 cut(s) 1038
BmgT120I GGNCC 2 cut(s) 480, 1263
BmiI GGNNCC 3 cut(s) 171, 273, 363
BmrFI CCNGG 3 cut(s) 424, 833, 918
BmrI ACTGGG 1 cut(s) 90
BmsI GCATC 6 cut(s) 421, 622, 968, 978, 1280, 1292
BmuI ACTGGG 1 cut(s) 90
BpiI GAAGAC 1 cut(s) 1215
BpmI CTGGAG 1 cut(s) 1403
Bpu10I CCTNAGC 1 cut(s) 1267
Bpu14I TTCGAA 3 cut(s) 310, 516, 1148
BpuEI CTTGAG 1 cut(s) 521
BpuMI CCSGG 1 cut(s) 833
BsaJI CCNNGG 3 cut(s) 422, 641, 1123
BsaWI WCCGGW 2 cut(s) 297, 875
Bsc4I CCNNNNNNNGG 4 cut(s) 1061, 1396, 1412, 1526
Bse118I RCCGGY 1 cut(s) 297
Bse1I ACTGG 2 cut(s) 85, 161
Bse21I CCTNAGG 2 cut(s) 174, 366
Bse3DI GCAATG 1 cut(s) 252
BseBI CCWGG 2 cut(s) 424, 918
BseDI CCNNGG 3 cut(s) 422, 641, 1123
BseGI GGATG 3 cut(s) 482, 651, 658
BseLI CCNNNNNNNGG 4 cut(s) 1061, 1396, 1412, 1526
BseMI GCAATG 1 cut(s) 252
BseMII CTCAG 6 cut(s) 165, 357, 441, 1281, 1302, 1382
BseNI ACTGG 2 cut(s) 85, 161
BseRI GAGGAG 3 cut(s) 191, 383, 1099
BseSI GKGCMC 1 cut(s) 1214
BseXI GCAGC 5 cut(s) 168, 869, 898, 978, 1204
BseYI CCCAGC 1 cut(s) 1406
BsgI GTGCAG 1 cut(s) 897
Bsh1236I CGCG 2 cut(s) 724, 1434
BshFI GGCC 1 cut(s) 600
BshTI ACCGGT 1 cut(s) 297
BsiHKAI GWGCWC 2 cut(s) 1214, 1513
BsiHKCI CYCGRG 1 cut(s) 1038
BsiSI CCGG 3 cut(s) 298, 832, 876
BslFI GGGAC 1 cut(s) 152
BslI CCNNNNNNNGG 4 cut(s) 1061, 1396, 1412, 1526
BsmAI GTCTC 3 cut(s) 581, 1041, 1508
BsmFI GGGAC 1 cut(s) 152
BsnI GGCC 1 cut(s) 600
BsoBI CYCGRG 1 cut(s) 1038
Bsp119I TTCGAA 3 cut(s) 310, 516, 1148
Bsp1286I GDGCHC 2 cut(s) 1214, 1513
Bsp143I GATC 3 cut(s) 361, 527, 1399
BspACI CCGC 5 cut(s) 613, 780, 815, 989, 1338
BspANI GGCC 1 cut(s) 600
BspCNI CTCAG 6 cut(s) 166, 358, 442, 1280, 1303, 1381
BspFNI CGCG 2 cut(s) 724, 1434
BspLI GGNNCC 3 cut(s) 171, 273, 363
BspMAI CTGCAG 2 cut(s) 352, 859
BspMI ACCTGC 2 cut(s) 862, 1249
BspPI GGATC 3 cut(s) 356, 369, 1407
BspT104I TTCGAA 3 cut(s) 310, 516, 1148
BspTI CTTAAG 1 cut(s) 952
BsrDI GCAATG 1 cut(s) 252
BsrFI RCCGGY 1 cut(s) 297
BsrI ACTGG 2 cut(s) 85, 161
BssAI RCCGGY 1 cut(s) 297
BssECI CCNNGG 3 cut(s) 422, 641, 1123
BssMI GATC 3 cut(s) 361, 527, 1399
Bst2UI CCWGG 2 cut(s) 424, 918
Bst4CI ACNGT 4 cut(s) 72, 143, 466, 1049
BstAFI CTTAAG 1 cut(s) 952
BstAPI GCANNNNNTGC 1 cut(s) 911
BstBI TTCGAA 3 cut(s) 310, 516, 1148
BstC8I GCNNGC 4 cut(s) 496, 602, 1214, 1432
BstDEI CTNAG 6 cut(s) 174, 366, 450, 1267, 1311, 1368
BstDSI CCRYGG 1 cut(s) 1123
BstF5I GGATG 3 cut(s) 482, 651, 658
BstFNI CGCG 2 cut(s) 724, 1434
BstHHI GCGC 3 cut(s) 538, 724, 959
BstKTI GATC 3 cut(s) 364, 530, 1402
BstMAI GTCTC 3 cut(s) 581, 1041, 1508
BstMBI GATC 3 cut(s) 361, 527, 1399
BstMWI GCNNNNNNNGC 4 cut(s) 178, 866, 911, 963
BstNI CCWGG 2 cut(s) 424, 918
BstSCI CCNGG 3 cut(s) 422, 831, 916
BstSFI CTRYAG 3 cut(s) 207, 348, 855
BstSLI GKGCMC 1 cut(s) 1214
BstUI CGCG 2 cut(s) 724, 1434
BstV1I GCAGC 5 cut(s) 168, 869, 898, 978, 1204
BstV2I GAAGAC 1 cut(s) 1215
BstX2I RGATCY 1 cut(s) 361
BstYI RGATCY 1 cut(s) 361
Bsu36I CCTNAGG 2 cut(s) 174, 366
BsuRI GGCC 1 cut(s) 600
BtgI CCRYGG 1 cut(s) 1123
BtgZI GCGATG 1 cut(s) 1449
BtsCI GGATG 3 cut(s) 482, 651, 658
BtsI GCAGTG 1 cut(s) 1480
BtsIMutI CAGTG 2 cut(s) 148, 1480
BveI ACCTGC 2 cut(s) 862, 1249
Cac8I GCNNGC 4 cut(s) 496, 602, 1214, 1432
CaiI CAGNNNCTG 1 cut(s) 1286
CfoI GCGC 3 cut(s) 538, 724, 959
Cfr10I RCCGGY 1 cut(s) 297
Cfr13I GGNCC 2 cut(s) 480, 1263
Csp6I GTAC 2 cut(s) 1458, 1579
CspAI ACCGGT 1 cut(s) 297
CviAII CATG 5 cut(s) 963, 1031, 1321, 1418, 1500
CviQI GTAC 2 cut(s) 1458, 1579
DdeI CTNAG 6 cut(s) 174, 366, 450, 1267, 1311, 1368
DpnI GATC 3 cut(s) 363, 529, 1401
DpnII GATC 3 cut(s) 361, 527, 1399
DraI TTTAAA 1 cut(s) 744
DriI GACNNNNNGTC 1 cut(s) 84
Eam1105I GACNNNNNGTC 1 cut(s) 84
EciI GGCGGA 1 cut(s) 602
Eco147I AGGCCT 1 cut(s) 600
Eco32I GATATC 2 cut(s) 825, 1363
Eco47I GGWCC 2 cut(s) 480, 1263
Eco57I CTGAAG 1 cut(s) 170
Eco81I CCTNAGG 2 cut(s) 174, 366
Eco88I CYCGRG 1 cut(s) 1038
EcoRI GAATTC 2 cut(s) 196, 672
EcoRII CCWGG 2 cut(s) 422, 916
EcoRV GATATC 2 cut(s) 825, 1363
FaeI CATG 5 cut(s) 966, 1034, 1324, 1421, 1503
FalI AAGNNNNNCTT 4 cut(s) 307, 339, 1514, 1546
FaqI GGGAC 1 cut(s) 152
FatI CATG 5 cut(s) 962, 1030, 1320, 1417, 1499
FauNDI CATATG 1 cut(s) 1557
Fnu4HI GCNGC 5 cut(s) 182, 858, 912, 967, 1193
FokI GGATG 3 cut(s) 489, 658, 665
Fsp4HI GCNGC 5 cut(s) 182, 858, 912, 967, 1193
FspBI CTAG 5 cut(s) 549, 687, 828, 1245, 1470
FspI TGCGCA 1 cut(s) 537
GlaI GCGC 3 cut(s) 537, 723, 958
GluI GCNGC 5 cut(s) 182, 858, 912, 967, 1193
GsaI CCCAGC 1 cut(s) 1410
GsuI CTGGAG 1 cut(s) 1403
HaeIII GGCC 1 cut(s) 600
HapII CCGG 3 cut(s) 298, 832, 876
HhaI GCGC 3 cut(s) 538, 724, 959
Hin1II CATG 5 cut(s) 966, 1034, 1324, 1421, 1503
Hin6I GCGC 3 cut(s) 536, 722, 957
HinP1I GCGC 3 cut(s) 536, 722, 957
HincII GTYRAC 4 cut(s) 223, 385, 838, 1449
HindII GTYRAC 4 cut(s) 223, 385, 838, 1449
HindIII AAGCTT 1 cut(s) 53
HpaI GTTAAC 3 cut(s) 223, 385, 838
HpaII CCGG 3 cut(s) 298, 832, 876
HphI GGTGA 4 cut(s) 964, 1184, 1230, 1509
Hpy188I TCNGA 9 cut(s) 122, 189, 262, 406, 645, 678, 703, 1312, 1508
Hpy188III TCNNGA 7 cut(s) 66, 365, 397, 431, 629, 1370, 1382
HpyAV CCTTC 5 cut(s) 157, 267, 627, 1155, 1206
HpyCH4III ACNGT 4 cut(s) 72, 143, 466, 1049
HpyCH4V TGCA 7 cut(s) 350, 604, 857, 905, 914, 966, 1212
HpyF10VI GCNNNNNNNGC 4 cut(s) 178, 866, 911, 963
HpyF3I CTNAG 6 cut(s) 174, 366, 450, 1267, 1311, 1368
Hsp92II CATG 5 cut(s) 966, 1034, 1324, 1421, 1503
HspAI GCGC 3 cut(s) 536, 722, 957
KspAI GTTAAC 3 cut(s) 223, 385, 838
Kzo9I GATC 3 cut(s) 361, 527, 1399
LmnI GCTCC 3 cut(s) 169, 178, 1086
Lsp1109I GCAGC 5 cut(s) 168, 869, 898, 978, 1204
LweI GCATC 6 cut(s) 421, 622, 968, 978, 1280, 1292
MaeI CTAG 5 cut(s) 549, 687, 828, 1245, 1470
MaeIII GTNAC 1 cut(s) 560
MalI GATC 3 cut(s) 363, 529, 1401
MboI GATC 3 cut(s) 361, 527, 1399
MboII GAAGA 7 cut(s) 142, 300, 530, 748, 1215, 1315, 1557
MflI RGATCY 1 cut(s) 361
MhlI GDGCHC 2 cut(s) 1214, 1513
MluCI AATT 7 cut(s) 196, 291, 672, 788, 1092, 1111, 1377
MlyI GAGTC 4 cut(s) 94, 272, 461, 1043
MroXI GAANNNNTTC 3 cut(s) 1144, 1328, 1377
MseI TTAA 8 cut(s) 75, 114, 222, 294, 384, 743, 837, 953
MspA1I CMGCKG 2 cut(s) 782, 1338
MspCI CTTAAG 1 cut(s) 952
MspI CCGG 3 cut(s) 298, 832, 876
MspR9I CCNGG 3 cut(s) 424, 833, 918
MvaI CCWGG 2 cut(s) 424, 918
MvnI CGCG 2 cut(s) 724, 1434
MwoI GCNNNNNNNGC 4 cut(s) 178, 866, 911, 963
NciI CCSGG 1 cut(s) 833
NdeI CATATG 1 cut(s) 1557
NdeII GATC 3 cut(s) 361, 527, 1399
NlaIII CATG 5 cut(s) 966, 1034, 1324, 1421, 1503
NlaIV GGNNCC 3 cut(s) 171, 273, 363
NmuCI GTSAC 1 cut(s) 560
NsbI TGCGCA 1 cut(s) 537
NspV TTCGAA 3 cut(s) 310, 516, 1148
PaqCI CACCTGC 2 cut(s) 862, 1249
PceI AGGCCT 1 cut(s) 600
PdmI GAANNNNTTC 3 cut(s) 1144, 1328, 1377
PfeI GAWTC 8 cut(s) 103, 393, 427, 625, 1097, 1291, 1373, 1562
PflMI CCANNNNNTGG 1 cut(s) 1526
PinAI ACCGGT 1 cut(s) 297
PkrI GCNGC 5 cut(s) 183, 859, 913, 968, 1194
PleI GAGTC 4 cut(s) 93, 271, 460, 1042
PpsI GAGTC 4 cut(s) 93, 271, 460, 1042
Psp6I CCWGG 2 cut(s) 422, 916
PspFI CCCAGC 1 cut(s) 1406
PspGI CCWGG 2 cut(s) 422, 916
PspN4I GGNNCC 3 cut(s) 171, 273, 363
PspPI GGNCC 2 cut(s) 480, 1263
PstI CTGCAG 2 cut(s) 352, 859
PstNI CAGNNNCTG 1 cut(s) 1286
PsuI RGATCY 1 cut(s) 361
RsaI GTAC 2 cut(s) 1459, 1580
RsaNI GTAC 2 cut(s) 1458, 1579
SaqAI TTAA 8 cut(s) 75, 114, 222, 294, 384, 743, 837, 953
SatI GCNGC 5 cut(s) 182, 858, 912, 967, 1193
Sau3AI GATC 3 cut(s) 361, 527, 1399
Sau96I GGNCC 2 cut(s) 480, 1263
SchI GAGTC 4 cut(s) 94, 272, 461, 1043
ScrFI CCNGG 3 cut(s) 424, 833, 918
SduI GDGCHC 2 cut(s) 1214, 1513
SfaNI GCATC 6 cut(s) 421, 622, 968, 978, 1280, 1292
SfcI CTRYAG 3 cut(s) 207, 348, 855
SfuI TTCGAA 3 cut(s) 310, 516, 1148
SinI GGWCC 2 cut(s) 480, 1263
SmlI CTYRAG 2 cut(s) 500, 952
SmoI CTYRAG 2 cut(s) 500, 952
SpeI ACTAGT 1 cut(s) 548
Sse9I AATT 7 cut(s) 196, 291, 672, 788, 1092, 1111, 1377
SseBI AGGCCT 1 cut(s) 600
SsiI CCGC 5 cut(s) 613, 780, 815, 989, 1338
SspMI CTAG 5 cut(s) 549, 687, 828, 1245, 1470
StuI AGGCCT 1 cut(s) 600
StyD4I CCNGG 3 cut(s) 422, 831, 916
TaaI ACNGT 4 cut(s) 72, 143, 466, 1049
TaqI TCGA 5 cut(s) 310, 516, 1082, 1148, 1179
TasI AATT 7 cut(s) 196, 291, 672, 788, 1092, 1111, 1377
TatI WGTACW 1 cut(s) 1578
TfiI GAWTC 8 cut(s) 103, 393, 427, 625, 1097, 1291, 1373, 1562
Tru1I TTAA 8 cut(s) 75, 114, 222, 294, 384, 743, 837, 953
Tru9I TTAA 8 cut(s) 75, 114, 222, 294, 384, 743, 837, 953
TscAI CASTG 2 cut(s) 148, 1480
TseFI GTSAC 1 cut(s) 560
TseI GCWGC 5 cut(s) 181, 857, 911, 966, 1192
Tsp45I GTSAC 1 cut(s) 560
TspDTI ATGAA 8 cut(s) 209, 669, 903, 944, 1321, 1337, 1544, 1557
TspGWI ACGGA 1 cut(s) 746
TspRI CASTG 2 cut(s) 148, 1480
Van91I CCANNNNNTGG 1 cut(s) 1526
Vha464I CTTAAG 1 cut(s) 952
VneI GTGCAC 1 cut(s) 1210
VpaK11BI GGWCC 2 cut(s) 480, 1263
XapI RAATTY 2 cut(s) 196, 672
XmnI GAANNNNTTC 3 cut(s) 1144, 1328, 1377
XspI CTAG 5 cut(s) 549, 687, 828, 1245, 1470
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.