Rw1G028510

No description available

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
Physical Location & Seq
Reverse (-)
56165923 .. 56168605
2683 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G028510.1

Sequence Viewer

Length: 1776 bp
ATGTCCTCCACTAATGAGTTTCAAGAACGTCGCTTTCCAGATGACAGAAAGAAGCTTGATGGGTTTAGACTATTCAACACTGTGAGTCCACAAGACAGCCAAGACTTAGAAACCAATTCCACGTTTAATATCCGAAAGAGTTTGGCTTGGGACAGCGCCTTCTTCACAAATCCAGGAGTCTTGGAACCTGAAGAGCTGCTTCAGACTACGAGTTCTGGAGCTACAGGCAATGCAGTTAACCTACTTGGAAATGAGGAAGAAATACTATTGCCTTCGGAGTCTTTGGAGCCTGAAAGAACCAGAAATTTTGAGAGCTGTAGTTATCGAAAGAGCTTAGCTTGGGATAATGCCTTTTACACTAGTCCAGGGGTTTTGGATCCTGAGGAATTGTCTATAGTAAACAAAGGATTCAAGAAATCTGAGTCGCATCAACTTCCTGCCATTCGAGAAGTTTGGCGGTCCACGGGGTCAAAGTCTACAACAGATAGCGGCAGTTCTGCTTTGGCAAGCCTAGAGTTTGAACTTTTTGGGGACAAAATGTTATCTATGCAGAAGCCAGCTAGTCTGAAACTGAAAAGAGGAAGGGGATTGCAAAATGTCCACTCCACGAAGAAAACTGATGCTTCGTCTCGGGTGAAGATGAAAGCCTCAGCATCCCAAAGGCAAAATCTTAATAATCAGCCAGAAAGGATTTTAAAGGAGGTTTTTGTTTCCTCACAGAGACAGCTCGCTGCTGGAAGTGGGACATTCATCCCAACAGCGTCTCTTAAACAACCAAAGTTATTTAGTGGCGTTAATCACTATTCAACAGCTGCAACCAAAAGGTTCTCTTTGGGTGGAAACTATGTCAAGATGGGAACTGCAAAGGCTGCAGGTGGACAATGTTCGACTCTTTCAAAGAAACCTTACTTGAGGGCTTCATCCAGTATTGTCACTCATAGTTCCACACCATCCCCAAAATTGTCTTCATCAGGTTCTCCAGCTGCCAAAGACACTAGTGAATCTCCAATGAACTCAAGAAGAAAATTTGATTATTCACTTGACGATTTTGCTGCCAATGGCTTAACCATGAACAATCATTTGAGATTCAAAAAGAAAGACAAAGATGAACTCGAAAGTTCTTGTCAGGATTCTTGTAAAATGTTCACACCAAAGTCTACTGTTTACGCCTCATCTGCTACTTCTCTTGATGGCTGGTCCTCTGAATCATCATCGTCATCTATGAGTCATAGATCTATCAGCAGTCAGATTTCTTTTGGGAGTGATGCCTCTCAGGCATCAGATACGGTACATTGTGTTGGACAGGAAAATCAGGAAACAAGTCTCCCAGATCAGAATATGAAGCCCTCAGGTCTCCGAGTGCCATCACCGAAGATTGGCTTTTTTGACGAGGAGATTATTTTGGTGCGAGCAAGGGGTAGCATGCAGTTTCATTCTGTTGTGCCAAGCACAGTGTCTCCAAATGGAGGTGCAAAGCGATATGGGAAGCTTAAACCTCCAAGAAACTTTGATGGGAGAAAGAATGTGCAGGAGGTGCTCAAGAGACTGAACAAGGAATGCACCAAAGAGAATGAAGATCCCAACATACATTGTCCTGGAGAAAACATGTGCAGCGGTCAAGATAATAGTGACAGGGAAAATACACATTACTTCAAAAAACAAATTGAAGGTTTAACTAAACAAGTTGGTATCATTGATCTTGGTTGTGATTTTGTGATGGAGCTCGGAGCAGACAAGAATGTTTTCCATCCTAATTTGACAAGAACAAAGTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

591

Amino Acids

65.08

Weight (kDa)

9.02

Isoelectric Point (pI)

55.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 863
Acc36I ACCTGC 1 cut(s) 863
AccI GTMKAC 2 cut(s) 476, 1157
AciI CCGC 3 cut(s) 457, 489, 1614
AclWI GGATC 3 cut(s) 371, 384, 1571
AcsI RAATTY 2 cut(s) 304, 1025
AcuI CTGAAG 2 cut(s) 185, 210
AfaI GTAC 1 cut(s) 1290
AfiI CCNNNNNNNGG 2 cut(s) 1376, 1466
AflIII ACRYGT 1 cut(s) 1605
AgsI TTSAA 9 cut(s) 23, 76, 412, 521, 807, 897, 1090, 1654, 1667
AhlI ACTAGT 2 cut(s) 359, 995
AjnI CCWGG 3 cut(s) 172, 364, 1594
AjuI GAANNNNNNNTTGG 2 cut(s) 949, 981
Alw21I GWGCWC 2 cut(s) 1539, 1725
Alw26I GTCTC 7 cut(s) 633, 715, 768, 1328, 1358, 1461, 1537
AlwI GGATC 3 cut(s) 371, 384, 1571
Ama87I CYCGRG 1 cut(s) 630
ApeKI GCWGC 7 cut(s) 196, 731, 812, 869, 983, 1052, 1611
ApoI RAATTY 2 cut(s) 304, 1025
Asp700I GAANNNNTTC 1 cut(s) 1742
AspLEI GCGC 1 cut(s) 158
AspS9I GGNCC 2 cut(s) 459, 1197
AsuHPI GGTGA 2 cut(s) 646, 1359
AvaI CYCGRG 1 cut(s) 630
AvaII GGWCC 2 cut(s) 459, 1197
AxyI CCTNAGG 2 cut(s) 381, 1348
BamHI GGATCC 1 cut(s) 376
BanII GRGCYC 1 cut(s) 1725
BbsI GAAGAC 1 cut(s) 957
Bbv12I GWGCWC 2 cut(s) 1539, 1725
BbvCI CCTCAGC 1 cut(s) 649
BbvI GCAGC 7 cut(s) 183, 718, 799, 856, 970, 1039, 1623
BccI CCATC 8 cut(s) 53, 847, 958, 1184, 1372, 1505, 1711, 1755
BcgI CGANNNNNNTGC 2 cut(s) 1034, 1068
BciT130I CCWGG 3 cut(s) 174, 366, 1596
BcoDI GTCTC 7 cut(s) 633, 715, 768, 1328, 1358, 1461, 1537
BcuI ACTAGT 2 cut(s) 359, 995
BfaI CTAG 4 cut(s) 360, 512, 561, 996
BfmI CTRYAG 4 cut(s) 222, 316, 393, 870
BfoI RGCGCY 1 cut(s) 159
BfuAI ACCTGC 1 cut(s) 863
BglI GCCNNNNNGGC 1 cut(s) 1274
BglII AGATCT 1 cut(s) 1232
BisI GCNGC 8 cut(s) 197, 490, 732, 813, 870, 984, 1053, 1612
BlpI GCTNAGC 1 cut(s) 334
BlsI GCNGC 8 cut(s) 198, 491, 733, 814, 871, 985, 1054, 1613
Bme1390I CCNGG 3 cut(s) 174, 366, 1596
Bme18I GGWCC 2 cut(s) 459, 1197
BmeT110I CYCGRG 1 cut(s) 630
BmgT120I GGNCC 2 cut(s) 459, 1197
BmiI GGNNCC 3 cut(s) 186, 288, 378
BmrFI CCNGG 3 cut(s) 174, 366, 1596
BmsI GCATC 5 cut(s) 436, 610, 662, 1255, 1286
BpiI GAAGAC 1 cut(s) 957
BpmI CTGGAG 3 cut(s) 237, 963, 1617
Bpu10I CCTNAGC 1 cut(s) 649
Bpu1102I GCTNAGC 1 cut(s) 334
BpuEI CTTGAG 3 cut(s) 931, 1000, 1523
BsaI GGTCTC 1 cut(s) 1358
BsaJI CCNNGG 2 cut(s) 365, 462
BsaXI ACNNNNNCTCC 2 cut(s) 1441, 1471
Bsc4I CCNNNNNNNGG 2 cut(s) 1376, 1466
Bse1I ACTGG 1 cut(s) 924
Bse21I CCTNAGG 2 cut(s) 381, 1348
Bse3DI GCAATG 1 cut(s) 235
BseBI CCWGG 3 cut(s) 174, 366, 1596
BseDI CCNNGG 2 cut(s) 365, 462
BseGI GGATG 5 cut(s) 653, 750, 920, 950, 1747
BseLI CCNNNNNNNGG 2 cut(s) 1376, 1466
BseMI GCAATG 1 cut(s) 235
BseMII CTCAG 5 cut(s) 372, 411, 663, 1286, 1362
BseNI ACTGG 1 cut(s) 924
BseRI GAGGAG 1 cut(s) 1406
BseXI GCAGC 7 cut(s) 183, 718, 799, 856, 970, 1039, 1623
BsgI GTGCAG 2 cut(s) 1547, 1630
BsiHKAI GWGCWC 2 cut(s) 1539, 1725
BsiHKCI CYCGRG 1 cut(s) 630
BslFI GGGAC 3 cut(s) 164, 545, 757
BslI CCNNNNNNNGG 2 cut(s) 1376, 1466
BsmAI GTCTC 7 cut(s) 633, 715, 768, 1328, 1358, 1461, 1537
BsmBI CGTCTC 2 cut(s) 633, 768
BsmFI GGGAC 3 cut(s) 164, 545, 757
BsmI GAATGC 1 cut(s) 1562
Bso31I GGTCTC 1 cut(s) 1358
BsoBI CYCGRG 1 cut(s) 630
Bsp1286I GDGCHC 2 cut(s) 1539, 1725
Bsp143I GATC 5 cut(s) 376, 1232, 1330, 1576, 1696
Bsp1720I GCTNAGC 1 cut(s) 334
BspACI CCGC 3 cut(s) 457, 489, 1614
BspCNI CTCAG 5 cut(s) 373, 412, 662, 1285, 1361
BspLI GGNNCC 3 cut(s) 186, 288, 378
BspMAI CTGCAG 1 cut(s) 874
BspMI ACCTGC 1 cut(s) 863
BspPI GGATC 3 cut(s) 371, 384, 1571
BspQI GCTCTTC 1 cut(s) 186
BspTNI GGTCTC 1 cut(s) 1358
BsrDI GCAATG 1 cut(s) 235
BsrI ACTGG 1 cut(s) 924
BssECI CCNNGG 2 cut(s) 365, 462
BssMI GATC 5 cut(s) 376, 1232, 1330, 1576, 1696
Bst2UI CCWGG 3 cut(s) 174, 366, 1596
Bst4CI ACNGT 4 cut(s) 82, 1162, 1288, 1453
Bst6I CTCTTC 1 cut(s) 186
BstAPI GCANNNNNTGC 2 cut(s) 869, 1534
BstC8I GCNNGC 5 cut(s) 508, 558, 729, 1410, 1424
BstDEI CTNAG 7 cut(s) 106, 334, 381, 420, 649, 1272, 1348
BstDSI CCRYGG 1 cut(s) 462
BstF5I GGATG 5 cut(s) 653, 750, 920, 950, 1747
BstH2I RGCGCY 1 cut(s) 159
BstHHI GCGC 1 cut(s) 158
BstKTI GATC 5 cut(s) 379, 1235, 1333, 1579, 1699
BstMAI GTCTC 7 cut(s) 633, 715, 768, 1328, 1358, 1461, 1537
BstMBI GATC 5 cut(s) 376, 1232, 1330, 1576, 1696
BstMWI GCNNNNNNNGC 4 cut(s) 869, 1175, 1274, 1534
BstNI CCWGG 3 cut(s) 174, 366, 1596
BstNSI RCATGY 2 cut(s) 1426, 1609
BstSCI CCNGG 3 cut(s) 172, 364, 1594
BstSFI CTRYAG 4 cut(s) 222, 316, 393, 870
BstV1I GCAGC 7 cut(s) 183, 718, 799, 856, 970, 1039, 1623
BstV2I GAAGAC 1 cut(s) 957
BstX2I RGATCY 3 cut(s) 376, 1232, 1576
BstYI RGATCY 3 cut(s) 376, 1232, 1576
Bsu36I CCTNAGG 2 cut(s) 381, 1348
BtgI CCRYGG 1 cut(s) 462
BtsCI GGATG 5 cut(s) 653, 750, 920, 950, 1747
BtsIMutI CAGTG 2 cut(s) 78, 1458
BveI ACCTGC 1 cut(s) 863
Cac8I GCNNGC 5 cut(s) 508, 558, 729, 1410, 1424
CfoI GCGC 1 cut(s) 158
Cfr13I GGNCC 2 cut(s) 459, 1197
CseI GACGC 1 cut(s) 750
Csp6I GTAC 1 cut(s) 1289
CviAII CATG 3 cut(s) 1069, 1423, 1606
CviQI GTAC 1 cut(s) 1289
DdeI CTNAG 7 cut(s) 106, 334, 381, 420, 649, 1272, 1348
DpnI GATC 5 cut(s) 378, 1234, 1332, 1578, 1698
DpnII GATC 5 cut(s) 376, 1232, 1330, 1576, 1696
DraI TTTAAA 1 cut(s) 696
Eam1104I CTCTTC 1 cut(s) 186
EarI CTCTTC 1 cut(s) 186
Ecl136II GAGCTC 1 cut(s) 1723
Eco24I GRGCYC 1 cut(s) 1725
Eco31I GGTCTC 1 cut(s) 1358
Eco47I GGWCC 2 cut(s) 459, 1197
Eco53kI GAGCTC 1 cut(s) 1723
Eco57I CTGAAG 2 cut(s) 185, 210
Eco81I CCTNAGG 2 cut(s) 381, 1348
Eco88I CYCGRG 1 cut(s) 630
EcoICRI GAGCTC 1 cut(s) 1723
EcoRII CCWGG 3 cut(s) 172, 364, 1594
EcoT38I GRGCYC 1 cut(s) 1725
Esp3I CGTCTC 2 cut(s) 633, 768
FaeI CATG 3 cut(s) 1072, 1426, 1609
FalI AAGNNNNNCTT 6 cut(s) 183, 215, 814, 846, 1364, 1396
FaqI GGGAC 3 cut(s) 164, 545, 757
FatI CATG 3 cut(s) 1068, 1422, 1605
FblI GTMKAC 2 cut(s) 476, 1157
Fnu4HI GCNGC 8 cut(s) 197, 490, 732, 813, 870, 984, 1053, 1612
FokI GGATG 5 cut(s) 640, 737, 907, 937, 1734
FriOI GRGCYC 1 cut(s) 1725
Fsp4HI GCNGC 8 cut(s) 197, 490, 732, 813, 870, 984, 1053, 1612
FspBI CTAG 4 cut(s) 360, 512, 561, 996
GlaI GCGC 1 cut(s) 157
GluI GCNGC 8 cut(s) 197, 490, 732, 813, 870, 984, 1053, 1612
GsuI CTGGAG 3 cut(s) 237, 963, 1617
HaeII RGCGCY 1 cut(s) 159
HgaI GACGC 1 cut(s) 750
HhaI GCGC 1 cut(s) 158
Hin1II CATG 3 cut(s) 1072, 1426, 1609
Hin6I GCGC 1 cut(s) 156
HinP1I GCGC 1 cut(s) 156
HincII GTYRAC 1 cut(s) 238
HindII GTYRAC 1 cut(s) 238
HindIII AAGCTT 2 cut(s) 53, 1487
HpaI GTTAAC 1 cut(s) 238
HphI GGTGA 2 cut(s) 646, 1359
Hpy99I CGWCG 1 cut(s) 33
HpyAV CCTTC 4 cut(s) 169, 282, 576, 1661
HpyCH4III ACNGT 4 cut(s) 82, 1162, 1288, 1453
HpyCH4IV ACGT 2 cut(s) 28, 122
HpyF10VI GCNNNNNNNGC 4 cut(s) 869, 1175, 1274, 1534
HpyF3I CTNAG 7 cut(s) 106, 334, 381, 420, 649, 1272, 1348
HpySE526I ACGT 2 cut(s) 28, 122
Hsp92II CATG 3 cut(s) 1072, 1426, 1609
HspAI GCGC 1 cut(s) 156
KspAI GTTAAC 1 cut(s) 238
Kzo9I GATC 5 cut(s) 376, 1232, 1330, 1576, 1696
LguI GCTCTTC 1 cut(s) 186
LmnI GCTCC 4 cut(s) 218, 286, 1720, 1727
Lsp1109I GCAGC 7 cut(s) 183, 718, 799, 856, 970, 1039, 1623
LweI GCATC 5 cut(s) 436, 610, 662, 1255, 1286
MaeI CTAG 4 cut(s) 360, 512, 561, 996
MaeII ACGT 2 cut(s) 28, 122
MaeIII GTNAC 2 cut(s) 931, 1628
MalI GATC 5 cut(s) 378, 1234, 1332, 1578, 1698
MboI GATC 5 cut(s) 376, 1232, 1330, 1576, 1696
MboII GAAGA 9 cut(s) 154, 203, 269, 622, 649, 957, 1032, 1384, 1586
MflI RGATCY 3 cut(s) 376, 1232, 1576
MhlI GDGCHC 2 cut(s) 1539, 1725
MluCI AATT 7 cut(s) 115, 304, 386, 959, 1025, 1662, 1753
MlyI GAGTC 6 cut(s) 94, 186, 287, 431, 883, 1234
MmeI TCCRAC 1 cut(s) 1279
MroXI GAANNNNTTC 1 cut(s) 1742
MseI TTAA 9 cut(s) 126, 237, 672, 695, 768, 795, 1064, 1491, 1673
MspA1I CMGCKG 3 cut(s) 812, 983, 1614
MspR9I CCNGG 3 cut(s) 174, 366, 1596
Mva1269I GAATGC 1 cut(s) 1562
MvaI CCWGG 3 cut(s) 174, 366, 1596
MwoI GCNNNNNNNGC 4 cut(s) 869, 1175, 1274, 1534
NdeII GATC 5 cut(s) 376, 1232, 1330, 1576, 1696
NlaIII CATG 3 cut(s) 1072, 1426, 1609
NlaIV GGNNCC 3 cut(s) 186, 288, 378
NmuCI GTSAC 2 cut(s) 931, 1628
NspI RCATGY 2 cut(s) 1426, 1609
PaeI GCATGC 1 cut(s) 1426
PaqCI CACCTGC 1 cut(s) 863
PciI ACATGT 1 cut(s) 1605
PciSI GCTCTTC 1 cut(s) 186
PctI GAATGC 1 cut(s) 1562
PdmI GAANNNNTTC 1 cut(s) 1742
PfeI GAWTC 5 cut(s) 408, 1001, 1086, 1130, 1205
PfoI TCCNGGA 2 cut(s) 172, 1594
PkrI GCNGC 8 cut(s) 198, 491, 733, 814, 871, 985, 1054, 1613
PleI GAGTC 6 cut(s) 93, 185, 286, 430, 883, 1233
PpsI GAGTC 6 cut(s) 93, 185, 286, 430, 883, 1233
PscI ACATGT 1 cut(s) 1605
Psp124BI GAGCTC 1 cut(s) 1725
Psp6I CCWGG 3 cut(s) 172, 364, 1594
PspGI CCWGG 3 cut(s) 172, 364, 1594
PspN4I GGNNCC 3 cut(s) 186, 288, 378
PspPI GGNCC 2 cut(s) 459, 1197
PstI CTGCAG 1 cut(s) 874
PsuI RGATCY 3 cut(s) 376, 1232, 1576
PvuII CAGCTG 2 cut(s) 812, 983
RsaI GTAC 1 cut(s) 1290
RsaNI GTAC 1 cut(s) 1289
SacI GAGCTC 1 cut(s) 1725
SapI GCTCTTC 1 cut(s) 186
SaqAI TTAA 9 cut(s) 126, 237, 672, 695, 768, 795, 1064, 1491, 1673
SatI GCNGC 8 cut(s) 197, 490, 732, 813, 870, 984, 1053, 1612
Sau3AI GATC 5 cut(s) 376, 1232, 1330, 1576, 1696
Sau96I GGNCC 2 cut(s) 459, 1197
SchI GAGTC 6 cut(s) 94, 186, 287, 431, 883, 1234
ScrFI CCNGG 3 cut(s) 174, 366, 1596
SduI GDGCHC 2 cut(s) 1539, 1725
SfaNI GCATC 5 cut(s) 436, 610, 662, 1255, 1286
SfcI CTRYAG 4 cut(s) 222, 316, 393, 870
SinI GGWCC 2 cut(s) 459, 1197
SmlI CTYRAG 3 cut(s) 910, 1015, 1538
SmoI CTYRAG 3 cut(s) 910, 1015, 1538
SpeI ACTAGT 2 cut(s) 359, 995
SphI GCATGC 1 cut(s) 1426
Sse9I AATT 7 cut(s) 115, 304, 386, 959, 1025, 1662, 1753
SsiI CCGC 3 cut(s) 457, 489, 1614
SspMI CTAG 4 cut(s) 360, 512, 561, 996
SstI GAGCTC 1 cut(s) 1725
StyD4I CCNGG 3 cut(s) 172, 364, 1594
TaaI ACNGT 4 cut(s) 82, 1162, 1288, 1453
TaiI ACGT 2 cut(s) 31, 125
TaqI TCGA 4 cut(s) 325, 445, 887, 1113
TasI AATT 7 cut(s) 115, 304, 386, 959, 1025, 1662, 1753
TauI GCSGC 1 cut(s) 492
TfiI GAWTC 5 cut(s) 408, 1001, 1086, 1130, 1205
Tru1I TTAA 9 cut(s) 126, 237, 672, 695, 768, 795, 1064, 1491, 1673
Tru9I TTAA 9 cut(s) 126, 237, 672, 695, 768, 795, 1064, 1491, 1673
TscAI CASTG 2 cut(s) 85, 1458
TseFI GTSAC 2 cut(s) 931, 1628
TseI GCWGC 7 cut(s) 196, 731, 812, 869, 983, 1052, 1611
Tsp45I GTSAC 2 cut(s) 931, 1628
TspRI CASTG 2 cut(s) 85, 1458
VpaK11BI GGWCC 2 cut(s) 459, 1197
XapI RAATTY 2 cut(s) 304, 1025
XceI RCATGY 2 cut(s) 1426, 1609
XmiI GTMKAC 2 cut(s) 476, 1157
XmnI GAANNNNTTC 1 cut(s) 1742
XspI CTAG 4 cut(s) 360, 512, 561, 996
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.