FvH4_7g20221

Cyclic nucleotide-gated ion channel 1-like

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
Physical Location & Seq
Reverse (-)
16484422 .. 16486058
1637 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g20221.t1

Sequence Viewer

Length: 1239 bp
ATGATTGAAAAGGGTGAACCGGTTGATAAGATCGTCTTCGTCGTATATGGAACAGTATGTATAGCAGATAATATGTCCTTCGGAGACGATGCAGGAGATTTCGTGGGAGAAGAACTCCTAGATTGGGTATTAGATAACTCGTTTCCTGCCCTATTACCCATAGGTAAGCATGACTATAAACTCATGTCTAAGGATCGCTCTAACCTCTTGGGTGAGAATGTTGAAGTCCTTTTTCTCACGACCGTGGACTTGGCAAGTGTAGTCTCTGAATACAGGTCGCATTTTAGCAGAGTGCCAATGTTCGAAGAAATGGATGAAGAAGTCTTGAAAGAAATCTCAAAACATATGAAACATATGAGCTATAGCAGCGACACTGTTATTGTTGAAGAGCACAAACCACTTGATATGATGTTCCTCCTATTAGACGGAGCAAAGGTAACTGTTAAAGGGGAAGCATCTTCCTATCAGTGCGGCGTGGGAGATTTCTATGGATTAGAGCTTGTACATTGGATTACAAACTGGGCGTCACATTCTAATTTTCCCGCCAATTTGCCTTTGTCCCAGTGTTCCGTTAAAGTAAATTATCATTCATCACGTGTTGCCGAAGTCGATGTTATCTGGGCGGATGACTTGAAGCGCATGGTGTGTGAATTCAAATCAGAGTTCATGAAGCATACCACCCTCCAAATAGATTCGGAGGGGAAGCTAGCAACCTTTGACCCATTGACTATGCTTAAGAAAGTGCCAATACTGGAAAATATGGATGAAGATGTTTTGACAGCTATCTGTTCTCATCTGAAACCCATGAAATATAGCGATGATCCGCCGGACGGGCCCTTCATTTTTACACGTCCAAACTCTCGGCCTGATTATTTTTATTATTCAGGAAACTACTTCGGAGAACAACTTCTCGGATGGGTATTAGATGCCGCCGTTGACGGAATATGGTGGCAGGCATATAAATGTGGGGGTGGGGGAGTTGATGTCCTTGTGCTCATGGCCCAAGACTTAGCTAAGGTGGTCTCTCAATTCGAGACTCATTTCGTCAGGCAGGTCCCCTCCTCCTTTTTAATGGATTCAGATTCAGATGATTCGGATCAGGATATGGATCCAGAGCCGGAACATGATCCGGATTCAGCACCTGATCAGGATTCGAATACAAAATTGAGTCCTGATCCAGATCAGTATTCAGATATGGATAGTCTGGATTTGCCTTCGGATTCTAATTATAGTTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

413

Amino Acids

46.45

Weight (kDa)

4.35

Isoelectric Point (pI)

33.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1042
AccIII TCCGGA 1 cut(s) 1129
AciI CCGC 5 cut(s) 471, 543, 623, 824, 930
AclWI GGATC 7 cut(s) 201, 815, 1103, 1104, 1116, 1121, 1169
AcsI RAATTY 1 cut(s) 650
AcvI CACGTG 1 cut(s) 596
AcyI GRCGYC 1 cut(s) 524
AfaI GTAC 1 cut(s) 504
AfiI CCNNNNNNNGG 2 cut(s) 124, 830
AflII CTTAAG 1 cut(s) 734
AflIII ACRYGT 2 cut(s) 595, 848
AgeI ACCGGT 1 cut(s) 19
AgsI TTSAA 6 cut(s) 8, 224, 328, 386, 634, 655
AjiI CACGTC 1 cut(s) 851
AleI CACNNNNGTG 1 cut(s) 242
AluBI AGCT 5 cut(s) 360, 499, 706, 782, 1013
AluI AGCT 5 cut(s) 360, 499, 706, 782, 1013
Alw21I GWGCWC 2 cut(s) 393, 996
Alw26I GTCTC 4 cut(s) 78, 268, 1027, 1028
AlwI GGATC 7 cut(s) 201, 815, 1103, 1104, 1116, 1121, 1169
AlwNI CAGNNNCTG 1 cut(s) 1142
Aor13HI TCCGGA 1 cut(s) 1129
AoxI GGCC 3 cut(s) 833, 863, 999
ApaI GGGCCC 1 cut(s) 837
ApeKI GCWGC 1 cut(s) 366
ApoI RAATTY 1 cut(s) 650
ArsI GACNNNNNNTTYG 2 cut(s) 509, 541
AsiGI ACCGGT 1 cut(s) 19
Asp700I GAANNNNTTC 1 cut(s) 906
AspLEI GCGC 1 cut(s) 639
AspS9I GGNCC 4 cut(s) 833, 834, 1000, 1054
AsuHPI GGTGA 2 cut(s) 26, 224
AsuII TTCGAA 2 cut(s) 303, 1154
AsuNHI GCTAGC 1 cut(s) 706
AvaII GGWCC 1 cut(s) 1054
BaeGI GKGCMC 1 cut(s) 837
BamHI GGATCC 1 cut(s) 1108
BanII GRGCYC 1 cut(s) 837
BbrPI CACGTG 1 cut(s) 596
BbsI GAAGAC 1 cut(s) 28
Bbv12I GWGCWC 2 cut(s) 393, 996
BbvI GCAGC 1 cut(s) 378
BccI CCATC 1 cut(s) 909
BceAI ACGGC 1 cut(s) 917
BclI TGATCA 1 cut(s) 1144
BcoDI GTCTC 4 cut(s) 78, 268, 1027, 1028
BfaI CTAG 3 cut(s) 119, 707, 1237
BfmI CTRYAG 1 cut(s) 361
BfrI CTTAAG 1 cut(s) 734
BfuAI ACCTGC 1 cut(s) 1042
BglI GCCNNNNNGGC 1 cut(s) 832
BisI GCNGC 3 cut(s) 367, 472, 930
BlsI GCNGC 3 cut(s) 368, 473, 931
Bme18I GGWCC 1 cut(s) 1054
BmgBI CACGTC 1 cut(s) 851
BmgT120I GGNCC 4 cut(s) 833, 834, 1000, 1054
BmiI GGNNCC 3 cut(s) 835, 1056, 1110
BmrI ACTGGG 2 cut(s) 529, 556
BmsI GCATC 3 cut(s) 79, 464, 916
BmtI GCTAGC 1 cut(s) 710
BmuI ACTGGG 2 cut(s) 529, 556
BpiI GAAGAC 1 cut(s) 28
BplI GAGNNNNNCTC 2 cut(s) 99, 131
Bpu10I CCTNAGC 1 cut(s) 1014
Bpu14I TTCGAA 2 cut(s) 303, 1154
BsaAI YACGTR 1 cut(s) 596
BsaBI GATNNNNATC 3 cut(s) 1095, 1107, 1179
BsaHI GRCGYC 1 cut(s) 524
BsaI GGTCTC 1 cut(s) 1027
BsaJI CCNNGG 1 cut(s) 243
BsaWI WCCGGW 2 cut(s) 19, 1129
BsaXI ACNNNNNCTCC 6 cut(s) 87, 117, 420, 450, 969, 999
Bsc4I CCNNNNNNNGG 2 cut(s) 124, 830
Bse118I RCCGGY 1 cut(s) 19
Bse1I ACTGG 3 cut(s) 524, 562, 756
Bse8I GATNNNNATC 3 cut(s) 1095, 1107, 1179
BseAI TCCGGA 1 cut(s) 1129
BseDI CCNNGG 1 cut(s) 243
BseGI GGATG 4 cut(s) 319, 631, 769, 920
BseJI GATNNNNATC 3 cut(s) 1095, 1107, 1179
BseLI CCNNNNNNNGG 2 cut(s) 124, 830
BseNI ACTGG 3 cut(s) 524, 562, 756
BseRI GAGGAG 1 cut(s) 1051
BseSI GKGCMC 1 cut(s) 837
BseXI GCAGC 1 cut(s) 378
Bsh1285I CGRYCG 1 cut(s) 243
BshFI GGCC 3 cut(s) 835, 865, 1001
BshTI ACCGGT 1 cut(s) 19
BsiEI CGRYCG 1 cut(s) 243
BsiHKAI GWGCWC 2 cut(s) 393, 996
BsiSI CCGG 4 cut(s) 20, 827, 1118, 1130
BslFI GGGAC 2 cut(s) 544, 1040
BslI CCNNNNNNNGG 2 cut(s) 124, 830
BsmAI GTCTC 4 cut(s) 78, 268, 1027, 1028
BsmBI CGTCTC 1 cut(s) 78
BsmFI GGGAC 2 cut(s) 544, 1040
BsnI GGCC 3 cut(s) 835, 865, 1001
Bso31I GGTCTC 1 cut(s) 1027
Bsp119I TTCGAA 2 cut(s) 303, 1154
Bsp120I GGGCCC 1 cut(s) 833
Bsp1286I GDGCHC 3 cut(s) 393, 837, 996
Bsp13I TCCGGA 1 cut(s) 1129
Bsp1407I TGTACA 1 cut(s) 502
Bsp143I GATC 9 cut(s) 30, 193, 820, 1096, 1108, 1126, 1144, 1174, 1180
BspACI CCGC 5 cut(s) 471, 543, 623, 824, 930
BspANI GGCC 3 cut(s) 835, 865, 1001
BspEI TCCGGA 1 cut(s) 1129
BspHI TCATGA 1 cut(s) 666
BspLI GGNNCC 3 cut(s) 835, 1056, 1110
BspMI ACCTGC 1 cut(s) 1042
BspOI GCTAGC 1 cut(s) 710
BspPI GGATC 7 cut(s) 201, 815, 1103, 1104, 1116, 1121, 1169
BspQI GCTCTTC 1 cut(s) 381
BspT104I TTCGAA 2 cut(s) 303, 1154
BspTI CTTAAG 1 cut(s) 734
BspTNI GGTCTC 1 cut(s) 1027
BsrFI RCCGGY 1 cut(s) 19
BsrGI TGTACA 1 cut(s) 502
BsrI ACTGG 3 cut(s) 524, 562, 756
BssAI RCCGGY 1 cut(s) 19
BssECI CCNNGG 1 cut(s) 243
BssMI GATC 9 cut(s) 30, 193, 820, 1096, 1108, 1126, 1144, 1174, 1180
BssNI GRCGYC 1 cut(s) 524
Bst4CI ACNGT 4 cut(s) 55, 244, 376, 442
Bst6I CTCTTC 1 cut(s) 381
BstACI GRCGYC 1 cut(s) 524
BstAFI CTTAAG 1 cut(s) 734
BstAUI TGTACA 1 cut(s) 502
BstBAI YACGTR 1 cut(s) 596
BstBI TTCGAA 2 cut(s) 303, 1154
BstC8I GCNNGC 2 cut(s) 708, 954
BstDEI CTNAG 3 cut(s) 189, 1009, 1014
BstDSI CCRYGG 1 cut(s) 243
BstF5I GGATG 4 cut(s) 319, 631, 769, 920
BstHHI GCGC 1 cut(s) 639
BstKTI GATC 9 cut(s) 33, 196, 823, 1099, 1111, 1129, 1147, 1177, 1183
BstMAI GTCTC 4 cut(s) 78, 268, 1027, 1028
BstMBI GATC 9 cut(s) 30, 193, 820, 1096, 1108, 1126, 1144, 1174, 1180
BstMCI CGRYCG 1 cut(s) 243
BstMWI GCNNNNNNNGC 2 cut(s) 366, 832
BstSFI CTRYAG 1 cut(s) 361
BstSLI GKGCMC 1 cut(s) 837
BstV1I GCAGC 1 cut(s) 378
BstV2I GAAGAC 1 cut(s) 28
BstX2I RGATCY 1 cut(s) 1108
BstYI RGATCY 1 cut(s) 1108
BsuRI GGCC 3 cut(s) 835, 865, 1001
BtgI CCRYGG 1 cut(s) 243
BtgZI GCGATG 1 cut(s) 831
BtrI CACGTC 1 cut(s) 851
BtsCI GGATG 4 cut(s) 319, 631, 769, 920
BtsIMutI CAGTG 3 cut(s) 372, 473, 569
BveI ACCTGC 1 cut(s) 1042
Cac8I GCNNGC 2 cut(s) 708, 954
CaiI CAGNNNCTG 1 cut(s) 1142
CciI TCATGA 1 cut(s) 666
CfoI GCGC 1 cut(s) 639
Cfr10I RCCGGY 1 cut(s) 19
Cfr13I GGNCC 4 cut(s) 833, 834, 1000, 1054
CseI GACGC 1 cut(s) 513
Csp6I GTAC 1 cut(s) 503
CspAI ACCGGT 1 cut(s) 19
CviAII CATG 7 cut(s) 170, 184, 640, 667, 805, 997, 1124
CviJI RGCY 9 cut(s) 360, 499, 706, 782, 835, 865, 1001, 1013, 1117
CviKI_1 RGCY 9 cut(s) 360, 499, 706, 782, 835, 865, 1001, 1013, 1117
CviQI GTAC 1 cut(s) 503
DdeI CTNAG 3 cut(s) 189, 1009, 1014
DpnI GATC 9 cut(s) 32, 195, 822, 1098, 1110, 1128, 1146, 1176, 1182
DpnII GATC 9 cut(s) 30, 193, 820, 1096, 1108, 1126, 1144, 1174, 1180
Eam1104I CTCTTC 1 cut(s) 381
EarI CTCTTC 1 cut(s) 381
EciI GGCGGA 2 cut(s) 638, 813
Eco24I GRGCYC 1 cut(s) 837
Eco31I GGTCTC 1 cut(s) 1027
Eco47I GGWCC 1 cut(s) 1054
Eco72I CACGTG 1 cut(s) 596
EcoO109I RGGNCCY 2 cut(s) 834, 1054
EcoRI GAATTC 1 cut(s) 650
EcoT38I GRGCYC 1 cut(s) 837
Esp3I CGTCTC 1 cut(s) 78
FaeI CATG 7 cut(s) 173, 187, 643, 670, 808, 1000, 1127
FalI AAGNNNNNCTT 2 cut(s) 20, 52
FaqI GGGAC 2 cut(s) 544, 1040
FatI CATG 7 cut(s) 169, 183, 639, 666, 804, 996, 1123
FauI CCCGC 1 cut(s) 550
FauNDI CATATG 2 cut(s) 345, 354
FbaI TGATCA 1 cut(s) 1144
Fnu4HI GCNGC 3 cut(s) 367, 472, 930
FokI GGATG 4 cut(s) 326, 638, 776, 927
FriOI GRGCYC 1 cut(s) 837
Fsp4HI GCNGC 3 cut(s) 367, 472, 930
FspBI CTAG 3 cut(s) 119, 707, 1237
GlaI GCGC 1 cut(s) 638
GluI GCNGC 3 cut(s) 367, 472, 930
HaeIII GGCC 3 cut(s) 835, 865, 1001
HapII CCGG 4 cut(s) 20, 827, 1118, 1130
HgaI GACGC 1 cut(s) 513
HhaI GCGC 1 cut(s) 639
Hin1I GRCGYC 1 cut(s) 524
Hin1II CATG 7 cut(s) 173, 187, 643, 670, 808, 1000, 1127
Hin6I GCGC 1 cut(s) 637
HinP1I GCGC 1 cut(s) 637
HincII GTYRAC 1 cut(s) 937
HindII GTYRAC 1 cut(s) 937
HinfI GANTC 9 cut(s) 692, 1036, 1076, 1082, 1091, 1133, 1151, 1168, 1220
HpaII CCGG 4 cut(s) 20, 827, 1118, 1130
HphI GGTGA 2 cut(s) 26, 224
Hpy166II GTNNAC 3 cut(s) 17, 247, 937
Hpy8I GTNNAC 3 cut(s) 17, 247, 937
Hpy99I CGWCG 1 cut(s) 44
HpyAV CCTTC 3 cut(s) 88, 847, 1224
HpyCH4III ACNGT 4 cut(s) 55, 244, 376, 442
HpyCH4IV ACGT 2 cut(s) 595, 850
HpyCH4V TGCA 1 cut(s) 92
HpyF10VI GCNNNNNNNGC 2 cut(s) 366, 832
HpyF3I CTNAG 3 cut(s) 189, 1009, 1014
HpySE526I ACGT 2 cut(s) 595, 850
Hsp92I GRCGYC 1 cut(s) 524
Hsp92II CATG 7 cut(s) 173, 187, 643, 670, 808, 1000, 1127
HspAI GCGC 1 cut(s) 637
Kpn2I TCCGGA 1 cut(s) 1129
Ksp22I TGATCA 1 cut(s) 1144
Kzo9I GATC 9 cut(s) 30, 193, 820, 1096, 1108, 1126, 1144, 1174, 1180
LguI GCTCTTC 1 cut(s) 381
LmnI GCTCC 1 cut(s) 428
Lsp1109I GCAGC 1 cut(s) 378
LweI GCATC 3 cut(s) 79, 464, 916
MaeI CTAG 3 cut(s) 119, 707, 1237
MaeII ACGT 2 cut(s) 595, 850
MaeIII GTNAC 2 cut(s) 436, 525
MalI GATC 9 cut(s) 32, 195, 822, 1098, 1110, 1128, 1146, 1176, 1182
MboI GATC 9 cut(s) 30, 193, 820, 1096, 1108, 1126, 1144, 1174, 1180
MboII GAAGA 7 cut(s) 28, 122, 317, 329, 398, 450, 779
MflI RGATCY 1 cut(s) 1108
MhlI GDGCHC 3 cut(s) 393, 837, 996
MluCI AATT 7 cut(s) 535, 547, 580, 650, 1028, 1163, 1225
MlyI GAGTC 2 cut(s) 1030, 1177
MnlI CCTC 6 cut(s) 215, 425, 691, 692, 1069, 1072
MroI TCCGGA 1 cut(s) 1129
MroXI GAANNNNTTC 1 cut(s) 906
MseI TTAA 4 cut(s) 444, 573, 735, 1070
MslI CAYNNNNRTG 2 cut(s) 242, 961
MspCI CTTAAG 1 cut(s) 734
MspI CCGG 4 cut(s) 20, 827, 1118, 1130
MwoI GCNNNNNNNGC 2 cut(s) 366, 832
NdeI CATATG 2 cut(s) 345, 354
NdeII GATC 9 cut(s) 30, 193, 820, 1096, 1108, 1126, 1144, 1174, 1180
NheI GCTAGC 1 cut(s) 706
NlaIII CATG 7 cut(s) 173, 187, 643, 670, 808, 1000, 1127
NlaIV GGNNCC 3 cut(s) 835, 1056, 1110
NmeAIII GCCGAG 1 cut(s) 841
NmuCI GTSAC 1 cut(s) 525
NspV TTCGAA 2 cut(s) 303, 1154
OliI CACNNNNGTG 1 cut(s) 242
PagI TCATGA 1 cut(s) 666
PciSI GCTCTTC 1 cut(s) 381
PcsI WCGNNNNNNNCGW 1 cut(s) 39
PdmI GAANNNNTTC 1 cut(s) 906
PfeI GAWTC 7 cut(s) 692, 1076, 1082, 1091, 1133, 1151, 1220
PinAI ACCGGT 1 cut(s) 19
PkrI GCNGC 3 cut(s) 368, 473, 931
PleI GAGTC 2 cut(s) 1030, 1176
PmaCI CACGTG 1 cut(s) 596
PmlI CACGTG 1 cut(s) 596
PpsI GAGTC 2 cut(s) 1030, 1176
Ppu21I YACGTR 1 cut(s) 596
PpuMI RGGWCCY 1 cut(s) 1054
Psp5II RGGWCCY 1 cut(s) 1054
PspCI CACGTG 1 cut(s) 596
PspN4I GGNNCC 3 cut(s) 835, 1056, 1110
PspOMI GGGCCC 1 cut(s) 833
PspPI GGNCC 4 cut(s) 833, 834, 1000, 1054
PspPPI RGGWCCY 1 cut(s) 1054
PstNI CAGNNNCTG 1 cut(s) 1142
PsuI RGATCY 1 cut(s) 1108
RsaI GTAC 1 cut(s) 504
RsaNI GTAC 1 cut(s) 503
RseI CAYNNNNRTG 2 cut(s) 242, 961
SapI GCTCTTC 1 cut(s) 381
SaqAI TTAA 4 cut(s) 444, 573, 735, 1070
SatI GCNGC 3 cut(s) 367, 472, 930
Sau3AI GATC 9 cut(s) 30, 193, 820, 1096, 1108, 1126, 1144, 1174, 1180
Sau96I GGNCC 4 cut(s) 833, 834, 1000, 1054
SchI GAGTC 2 cut(s) 1030, 1177
SduI GDGCHC 3 cut(s) 393, 837, 996
SfaNI GCATC 3 cut(s) 79, 464, 916
SfcI CTRYAG 1 cut(s) 361
SfuI TTCGAA 2 cut(s) 303, 1154
SinI GGWCC 1 cut(s) 1054
SmiMI CAYNNNNRTG 2 cut(s) 242, 961
SmlI CTYRAG 1 cut(s) 734
SmoI CTYRAG 1 cut(s) 734
Sse9I AATT 7 cut(s) 535, 547, 580, 650, 1028, 1163, 1225
SsiI CCGC 5 cut(s) 471, 543, 623, 824, 930
SspMI CTAG 3 cut(s) 119, 707, 1237
TaaI ACNGT 4 cut(s) 55, 244, 376, 442
TaiI ACGT 2 cut(s) 598, 853
TaqI TCGA 4 cut(s) 303, 609, 1032, 1154
TasI AATT 7 cut(s) 535, 547, 580, 650, 1028, 1163, 1225
TatI WGTACW 1 cut(s) 502
TauI GCSGC 2 cut(s) 474, 932
TfiI GAWTC 7 cut(s) 692, 1076, 1082, 1091, 1133, 1151, 1220
Tru1I TTAA 4 cut(s) 444, 573, 735, 1070
Tru9I TTAA 4 cut(s) 444, 573, 735, 1070
TscAI CASTG 3 cut(s) 379, 473, 569
TseFI GTSAC 1 cut(s) 525
TseI GCWGC 1 cut(s) 366
Tsp45I GTSAC 1 cut(s) 525
TspDTI ATGAA 8 cut(s) 330, 362, 579, 655, 683, 780, 821, 829
TspGWI ACGGA 3 cut(s) 441, 559, 954
TspRI CASTG 3 cut(s) 379, 473, 569
Vha464I CTTAAG 1 cut(s) 734
VpaK11BI GGWCC 1 cut(s) 1054
XapI RAATTY 1 cut(s) 650
XmnI GAANNNNTTC 1 cut(s) 906
XspI CTAG 3 cut(s) 119, 707, 1237
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.