Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0005276

Physical Location & Seq

Genomic Coordinates Reverse (-)

24199679 .. 24200392

Gene Structure 714 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1131600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGAATGTGTCAAAAAAGCCTTGCTTAGGAGTATCGTGCAGCATCACCAATAGTACTACACCGCCCCCAAAGACATCTCTATTTTGTTCTCCCACTACCACACACAAGTCTGGGGTTTATAGTTCTCCCTTATTCAGTAAATCTCCATTGTACTCGAGGAGCAAAATTGATTCCTCACTTGTCAATTCGGCCTCCCGTGGTTTTACCATGGGAACTCCTTCGAAATCCACAATGAAAAACAAAGGTGAACTGGAAACTTCTTGTCACCCATCCACTCTAGTGCGCACGCCGCAGTCTCCCCCTTATCCATCACCTGCTAGTTCCCTTGTTGGCTGGTCCTCAGCATCATCATCAGCGTCTTCGAATCAAAGATTGAAGAAGTCTGAGGTCGGTCTGAATACTTTCATCAGCGGACAGGCTTTTTTCGAGAGTGATGTCTCTCAGGAATCAATTCTGGAGAGCCATTCACATGATCAACCATGCATTGGACATGGAAATCAAGAAGCAATGCTCTTGAATCCACGCGAAGGAAAGATGTCAATAGGAGGTAGCCCTATGGATCCTAACAGTGTTTCTAAACATATCAGACCCTCATGTCTCCGAGCGCCATCTCCAAATATTGGCTTTTTCGACGAGTGTTTCAACTTCGCTATATGCTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

221

Amino Acids

23.46

Weight (kDa)

8.88

Isoelectric Point (pI)

69.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005276)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g20180 FvH4_7g20190 FvH4_7g20190 FvH4_7g20190 FvH4_7g20221
malus_domestica	MD01G1131600.v1.1 MD07G1179700.v1.1
prunus_persica	Prupe.2G219100_v2.0.a1 Prupe.2G219100_v2.0.a1 Prupe.2G222400_v2.0.a1 Prupe.2G222500_v2.0.a1 Prupe.2G222500_v2.0.a1 Prupe.2G222500_v2.0.a1 Prupe.2G222600_v2.0.a1 Prupe.2G222600_v2.0.a1 Prupe.2G222600_v2.0.a1 Prupe.2G222800_v2.0.a1 Prupe.2G222900_v2.0.a1 Prupe.2G223000_v2.0.a1
pyrus_communis	pycom01g14040 pycom07g17320
rosa_chinensis	RchiOBHm_Chr1g0364171
rosa_laevigata	RLG00000027510 RLG00000027511 RLG00000027512
rosa_roxburghii	Rroxscaffold_4G00292590
rosa_rugosa	Rorug01G0314100
rosa_samantha	Rh1AG321400
rosa_wichuraiana	Rw1G028510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	322
AasI	GACNNNNNNGTC	1 cut(s)	594
Acc16I	TGCGCA	1 cut(s)	284
Acc36I	ACCTGC	1 cut(s)	322
AccB7I	CCANNNNNTGG	2 cut(s)	485, 620
AccII	CGCG	1 cut(s)	525
AciI	CCGC	3 cut(s)	62, 290, 411
AclWI	GGATC	2 cut(s)	554, 567
AfaI	GTAC	2 cut(s)	55, 152
AfiI	CCNNNNNNNGG	4 cut(s)	26, 485, 527, 620
AgsI	TTSAA	3 cut(s)	376, 517, 643
AleI	CACNNNNGTG	1 cut(s)	278
Alw26I	GTCTC	3 cut(s)	300, 442, 602
AlwI	GGATC	2 cut(s)	554, 567
Ama87I	CYCGRG	1 cut(s)	154
AoxI	GGCC	1 cut(s)	189
ApeKI	GCWGC	1 cut(s)	39
Asp700I	GAANNNNTTC	3 cut(s)	217, 401, 450
AspLEI	GCGC	2 cut(s)	285, 607
AspS9I	GGNCC	1 cut(s)	336
AsuHPI	GGTGA	4 cut(s)	37, 257, 257, 303
AsuII	TTCGAA	2 cut(s)	221, 362
AvaI	CYCGRG	1 cut(s)	154
AvaII	GGWCC	1 cut(s)	336
BamHI	GGATCC	1 cut(s)	559
BbsI	GAAGAC	1 cut(s)	351
BbvCI	CCTCAGC	1 cut(s)	340
BbvI	GCAGC	1 cut(s)	51
BccI	CCATC	3 cut(s)	277, 316, 616
BclI	TGATCA	1 cut(s)	472
BcoDI	GTCTC	3 cut(s)	300, 442, 602
BfaI	CTAG	2 cut(s)	278, 318
BfoI	RGCGCY	1 cut(s)	608
BfuAI	ACCTGC	1 cut(s)	322
BisI	GCNGC	2 cut(s)	40, 290
BlsI	GCNGC	2 cut(s)	41, 291
BmcAI	AGTACT	1 cut(s)	55
Bme18I	GGWCC	1 cut(s)	336
BmeT110I	CYCGRG	1 cut(s)	154
BmgT120I	GGNCC	1 cut(s)	336
BmiI	GGNNCC	1 cut(s)	561
BmsI	GCATC	2 cut(s)	51, 353
BpiI	GAAGAC	1 cut(s)	351
BpmI	CTGGAG	1 cut(s)	476
Bpu10I	CCTNAGC	2 cut(s)	25, 340
Bpu14I	TTCGAA	2 cut(s)	221, 362
BsaJI	CCNNGG	2 cut(s)	196, 207
Bsc4I	CCNNNNNNNGG	4 cut(s)	26, 485, 527, 620
Bse1I	ACTGG	1 cut(s)	255
Bse3DI	GCAATG	1 cut(s)	513
BseDI	CCNNGG	2 cut(s)	196, 207
BseGI	GGATG	1 cut(s)	269
BseLI	CCNNNNNNNGG	4 cut(s)	26, 485, 527, 620
BseMI	GCAATG	1 cut(s)	513
BseMII	CTCAG	3 cut(s)	354, 375, 455
BseNI	ACTGG	1 cut(s)	255
BseRI	GAGGAG	1 cut(s)	172
BseXI	GCAGC	1 cut(s)	51
BsgI	GTGCAG	1 cut(s)	58
Bsh1236I	CGCG	1 cut(s)	525
BshFI	GGCC	1 cut(s)	191
BsiHKCI	CYCGRG	1 cut(s)	154
BslI	CCNNNNNNNGG	4 cut(s)	26, 485, 527, 620
BsmAI	GTCTC	3 cut(s)	300, 442, 602
BsnI	GGCC	1 cut(s)	191
BsoBI	CYCGRG	1 cut(s)	154
Bsp119I	TTCGAA	2 cut(s)	221, 362
Bsp143I	GATC	2 cut(s)	472, 559
Bsp19I	CCATGG	1 cut(s)	207
BspACI	CCGC	3 cut(s)	62, 290, 411
BspANI	GGCC	1 cut(s)	191
BspCNI	CTCAG	3 cut(s)	353, 376, 454
BspFNI	CGCG	1 cut(s)	525
BspLI	GGNNCC	1 cut(s)	561
BspMI	ACCTGC	1 cut(s)	322
BspPI	GGATC	2 cut(s)	554, 567
BspT104I	TTCGAA	2 cut(s)	221, 362
BsrDI	GCAATG	1 cut(s)	513
BsrI	ACTGG	1 cut(s)	255
BssECI	CCNNGG	2 cut(s)	196, 207
BssMI	GATC	2 cut(s)	472, 559
BssT1I	CCWWGG	1 cut(s)	207
Bst4CI	ACNGT	1 cut(s)	569
BstBI	TTCGAA	2 cut(s)	221, 362
BstC8I	GCNNGC	1 cut(s)	287
BstDEI	CTNAG	4 cut(s)	25, 340, 384, 441
BstDSI	CCRYGG	2 cut(s)	196, 207
BstENI	CCTNNNNNAGG	1 cut(s)	24
BstF5I	GGATG	1 cut(s)	269
BstFNI	CGCG	1 cut(s)	525
BstH2I	RGCGCY	1 cut(s)	608
BstHHI	GCGC	2 cut(s)	285, 607
BstKTI	GATC	2 cut(s)	475, 562
BstMAI	GTCTC	3 cut(s)	300, 442, 602
BstMBI	GATC	2 cut(s)	472, 559
BstMWI	GCNNNNNNNGC	1 cut(s)	289
BstUI	CGCG	1 cut(s)	525
BstV1I	GCAGC	1 cut(s)	51
BstV2I	GAAGAC	1 cut(s)	351
BstX2I	RGATCY	1 cut(s)	559
BstYI	RGATCY	1 cut(s)	559
BsuRI	GGCC	1 cut(s)	191
BtgI	CCRYGG	2 cut(s)	196, 207
BtsCI	GGATG	1 cut(s)	269
BtsIMutI	CAGTG	1 cut(s)	574
BveI	ACCTGC	1 cut(s)	322
Cac8I	GCNNGC	1 cut(s)	287
CfoI	GCGC	2 cut(s)	285, 607
Cfr13I	GGNCC	1 cut(s)	336
CseI	GACGC	1 cut(s)	345
Csp6I	GTAC	2 cut(s)	54, 151
CviAII	CATG	5 cut(s)	208, 470, 480, 491, 594
CviJI	RGCY	7 cut(s)	19, 191, 333, 419, 462, 552, 624
CviKI_1	RGCY	7 cut(s)	19, 191, 333, 419, 462, 552, 624
CviQI	GTAC	2 cut(s)	54, 151
DdeI	CTNAG	4 cut(s)	25, 340, 384, 441
DpnI	GATC	2 cut(s)	474, 561
DpnII	GATC	2 cut(s)	472, 559
DrdI	GACNNNNNNGTC	1 cut(s)	594
DseDI	GACNNNNNNGTC	1 cut(s)	594
Eco130I	CCWWGG	1 cut(s)	207
Eco47I	GGWCC	1 cut(s)	336
Eco88I	CYCGRG	1 cut(s)	154
EcoNI	CCTNNNNNAGG	1 cut(s)	24
EcoT14I	CCWWGG	1 cut(s)	207
EcoT22I	ATGCAT	1 cut(s)	485
ErhI	CCWWGG	1 cut(s)	207
FaeI	CATG	5 cut(s)	211, 473, 483, 494, 597
FalI	AAGNNNNNCTT	2 cut(s)	8, 40
FatI	CATG	5 cut(s)	207, 469, 479, 490, 593
FbaI	TGATCA	1 cut(s)	472
Fnu4HI	GCNGC	2 cut(s)	40, 290
FokI	GGATG	1 cut(s)	256
Fsp4HI	GCNGC	2 cut(s)	40, 290
FspAI	RTGCGCAY	1 cut(s)	284
FspBI	CTAG	2 cut(s)	278, 318
FspI	TGCGCA	1 cut(s)	284
GlaI	GCGC	2 cut(s)	284, 606
GluI	GCNGC	2 cut(s)	40, 290
GsuI	CTGGAG	1 cut(s)	476
HaeII	RGCGCY	1 cut(s)	608
HaeIII	GGCC	1 cut(s)	191
HgaI	GACGC	1 cut(s)	345
HhaI	GCGC	2 cut(s)	285, 607
Hin1II	CATG	5 cut(s)	211, 473, 483, 494, 597
Hin6I	GCGC	2 cut(s)	283, 605
HinP1I	GCGC	2 cut(s)	283, 605
HinfI	GANTC	4 cut(s)	170, 364, 446, 517
HphI	GGTGA	4 cut(s)	37, 257, 257, 303
Hpy166II	GTNNAC	1 cut(s)	248
Hpy188I	TCNGA	4 cut(s)	385, 396, 587, 602
Hpy188III	TCNNGA	5 cut(s)	427, 443, 455, 500, 514
Hpy8I	GTNNAC	1 cut(s)	248
Hpy99I	CGWCG	1 cut(s)	635
HpyAV	CCTTC	2 cut(s)	228, 521
HpyCH4III	ACNGT	1 cut(s)	569
HpyCH4V	TGCA	2 cut(s)	39, 483
HpyF10VI	GCNNNNNNNGC	1 cut(s)	289
HpyF3I	CTNAG	4 cut(s)	25, 340, 384, 441
Hsp92II	CATG	5 cut(s)	211, 473, 483, 494, 597
HspAI	GCGC	2 cut(s)	283, 605
Ksp22I	TGATCA	1 cut(s)	472
Kzo9I	GATC	2 cut(s)	472, 559
LmnI	GCTCC	1 cut(s)	159
LpnPI	CCDG	7 cut(s)	96, 236, 319, 327, 401, 428, 440
Lsp1109I	GCAGC	1 cut(s)	51
LweI	GCATC	2 cut(s)	51, 353
MaeI	CTAG	2 cut(s)	278, 318
MaeIII	GTNAC	1 cut(s)	263
MalI	GATC	2 cut(s)	474, 561
MboI	GATC	2 cut(s)	472, 559
MboII	GAAGA	2 cut(s)	351, 388
MflI	RGATCY	1 cut(s)	559
MluCI	AATT	3 cut(s)	165, 184, 450
MnlI	CCTC	7 cut(s)	150, 184, 202, 349, 379, 539, 601
Mph1103I	ATGCAT	1 cut(s)	485
MroXI	GAANNNNTTC	3 cut(s)	217, 401, 450
MslI	CAYNNNNRTG	2 cut(s)	278, 468
MspA1I	CMGCKG	1 cut(s)	411
MvnI	CGCG	1 cut(s)	525
MwoI	GCNNNNNNNGC	1 cut(s)	289
NcoI	CCATGG	1 cut(s)	207
NdeII	GATC	2 cut(s)	472, 559
NlaIII	CATG	5 cut(s)	211, 473, 483, 494, 597
NlaIV	GGNNCC	1 cut(s)	561
NmuCI	GTSAC	1 cut(s)	263
NsbI	TGCGCA	1 cut(s)	284
NsiI	ATGCAT	1 cut(s)	485
NspV	TTCGAA	2 cut(s)	221, 362
OliI	CACNNNNGTG	1 cut(s)	278
PaeR7I	CTCGAG	1 cut(s)	154
PaqCI	CACCTGC	1 cut(s)	322
PdmI	GAANNNNTTC	3 cut(s)	217, 401, 450
PfeI	GAWTC	4 cut(s)	170, 364, 446, 517
PflMI	CCANNNNNTGG	2 cut(s)	485, 620
PkrI	GCNGC	2 cut(s)	41, 291
PspN4I	GGNNCC	1 cut(s)	561
PspPI	GGNCC	1 cut(s)	336
PspXI	VCTCGAGB	1 cut(s)	154
PsuI	RGATCY	1 cut(s)	559
RsaI	GTAC	2 cut(s)	55, 152
RsaNI	GTAC	2 cut(s)	54, 151
RseI	CAYNNNNRTG	2 cut(s)	278, 468
SatI	GCNGC	2 cut(s)	40, 290
Sau3AI	GATC	2 cut(s)	472, 559
Sau96I	GGNCC	1 cut(s)	336
ScaI	AGTACT	1 cut(s)	55
SetI	ASST	4 cut(s)	247, 316, 390, 550
SfaNI	GCATC	2 cut(s)	51, 353
Sfr274I	CTCGAG	1 cut(s)	154
SfuI	TTCGAA	2 cut(s)	221, 362
SinI	GGWCC	1 cut(s)	336
SlaI	CTCGAG	1 cut(s)	154
SmiMI	CAYNNNNRTG	2 cut(s)	278, 468
SmlI	CTYRAG	1 cut(s)	154
SmoI	CTYRAG	1 cut(s)	154
Sse9I	AATT	3 cut(s)	165, 184, 450
SsiI	CCGC	3 cut(s)	62, 290, 411
SspI	AATATT	1 cut(s)	619
SspMI	CTAG	2 cut(s)	278, 318
StyI	CCWWGG	1 cut(s)	207
TaaI	ACNGT	1 cut(s)	569
TaqI	TCGA	5 cut(s)	155, 221, 362, 426, 630
TaqII	GACCGA	1 cut(s)	380
TasI	AATT	3 cut(s)	165, 184, 450
TatI	WGTACW	2 cut(s)	53, 150
TauI	GCSGC	1 cut(s)	292
TfiI	GAWTC	4 cut(s)	170, 364, 446, 517
TscAI	CASTG	1 cut(s)	574
TseFI	GTSAC	1 cut(s)	263
TseI	GCWGC	1 cut(s)	39
Tsp45I	GTSAC	1 cut(s)	263
TspDTI	ATGAA	3 cut(s)	17, 248, 394
TspRI	CASTG	1 cut(s)	574
Van91I	CCANNNNNTGG	2 cut(s)	485, 620
VpaK11BI	GGWCC	1 cut(s)	336
XagI	CCTNNNNNAGG	1 cut(s)	24
XhoI	CTCGAG	1 cut(s)	154
XmnI	GAANNNNTTC	3 cut(s)	217, 401, 450
XspI	CTAG	2 cut(s)	278, 318
ZrmI	AGTACT	1 cut(s)	55
Zsp2I	ATGCAT	1 cut(s)	485

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.