Rh1AG321400

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
Physical Location & Seq
Reverse (-)
55548566 .. 55551303
2738 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG321400.1

Sequence Viewer

Length: 1782 bp
ATGTCCGTCACTAATGAGTTTCAAGAACGTGGCTTTCCAGATGACAGAAAGAAGGTTGATGGGTATAGACTATTCAACACTGTGAGTCCACAAGACAGCCAGCACTTAGAAATCAATTCCACGTTTAATATCCGAAAGAGTTTGGCTTGGGACAGTGCCTTCTTCACAAATCCAGGGGTCTTGGAACCTGAAGAGCTGCTTCAGACTACGAGTTCTGGAGCTACAGGCAATGCAGTTAACCTACTTGGAAATGAGGAAGAAATACTATTGCCTTCGGAGTCTTTGGAGGCTGAAAGAACCAGAAAATTTGAGAGCTGTAGTTATCGAAAGAGCTTAGCTTGGGATAATGCCTTTTACACTAGTCCAGGGGTTTTGGATCCTGAGGAATTGTCTATAGTAAACAAAGGATTCAAGAAATCTGAGTCACATCAACTTCCTGCCATTCGAGAAGTTTGGCGGTCCACGGAGTCAAAGTCTACAACAGATAGCGGCAGTTCTGCTTTGGCAAGCCTAGAGTTTGAACTTTTTGGGGACAAAATGTTATCTATGCAGAAGCCAGCTAGTCTGAAACCGAAAAGAGGAAGGGGATTGCAAAATGTCCACTCCACGAAGAAAACTGATGCTTCGTCTCGGCTGAAGATGAAAGCCTCAGCATCCCAAAGGCAAATTCTTAATAATCAGCCAGAAAGGATTTTAAAGGAGGTTTTTGTTTCCTCACAAAGACAGCTCGCTGCTGGAAGTGGGACATTCATCCCAACAGCGTCTCTTAAACAACCAAAGTTATTTAGTGGCGTTAATCACTCTTCAACAGCTGCAACCAAAAGGTTCTCTTTGGGTGGAAACTATGTCAAGATGGGAACTGCAAAGGCTGCAGGTGTTGCAGGACAATGTTCGACTCTTTCAAAGAAACCTTGCTTGAGGGCTTCATCCAGTATTGTCACTCATAGTTCCACACCATCCCCAAAATTGTCTTCATCAGGTTCTCCAGCTGCCAAAGACACTAGTGAATCTCCAATGAACTCAAGAAGAAAATTTGATTATTCACTTGACGATTTTGCTGCCAATGGCTTAACCATGAACAATCATTTGAGATTCAAAAAGAAAGACAAAGATGAACTCGAAAGTTCTTGTCAGGATTCTTGTAAAATGTTCACACCAAAGTCTACTGTTTACGCCTCATCTGCTACTTCTCTTGATGGCTGGTCCTCTGAATCATCATCGTCATCTATGAGTCAAAGATCTATCAGCAGTCAGATTTCTTTTGGGAGTGATGCCTCTCAGGCATCAGATACGGTACATTGTGTTGGACAGGAAAATCAGGAAATAAGTCTCCCAGATCAGAATATGAAGCCCTCAGGTCTCCGAGTGCCATCACCGAAGATTGGCTTTTTTGACGAGGAGATTATTTTGGTGCGAGCAAGGGGTAGCATGCAGTTTCATTCTGTTGTGCCAAGCACAGTGTCTCCAAATGGAGGTGCAAAGCGATATGGGAAGCTTAAACCTCCAAGAAACTTTGATGGGAGAAAGAATGTGCAGGAGGTGCTCAAGAGACTGAACAAGGAATGCACCAAAGAGAATGAAGATCCCAACATACATTGTCCTGGAGAAAACATGTGCAGCGGTCAAGATAATAGTGACAGGGAAAATACACATTACTTCAAAAAACAAATTGAAGGTTTAACTAAACAAGTTGGTATCATTGATCTTGGTTGTGATTTTGTGATGGAGCTCGGAGCAGACAAGAATGTTTTCCATCCTAATTTGACAAGAACAAAGTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

593

Amino Acids

65.13

Weight (kDa)

8.99

Isoelectric Point (pI)

53.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 863
Acc36I ACCTGC 1 cut(s) 863
AccI GTMKAC 2 cut(s) 476, 1163
AciI CCGC 3 cut(s) 457, 489, 1620
AclWI GGATC 3 cut(s) 371, 384, 1577
AcsI RAATTY 3 cut(s) 305, 666, 1031
AcuI CTGAAG 3 cut(s) 185, 210, 656
AfaI GTAC 1 cut(s) 1296
AfiI CCNNNNNNNGG 3 cut(s) 578, 1382, 1472
AflIII ACRYGT 1 cut(s) 1611
AgsI TTSAA 9 cut(s) 23, 76, 412, 521, 807, 903, 1096, 1660, 1673
AhlI ACTAGT 2 cut(s) 359, 1001
AjnI CCWGG 3 cut(s) 172, 364, 1600
AjuI GAANNNNNNNTTGG 4 cut(s) 651, 683, 955, 987
Alw21I GWGCWC 2 cut(s) 1545, 1731
Alw26I GTCTC 6 cut(s) 633, 768, 1334, 1364, 1467, 1543
AlwI GGATC 3 cut(s) 371, 384, 1577
ApeKI GCWGC 7 cut(s) 196, 731, 812, 869, 989, 1058, 1617
ApoI RAATTY 3 cut(s) 305, 666, 1031
Asp700I GAANNNNTTC 1 cut(s) 1748
AspS9I GGNCC 2 cut(s) 459, 1203
AsuHPI GGTGA 1 cut(s) 1365
AvaII GGWCC 2 cut(s) 459, 1203
AxyI CCTNAGG 2 cut(s) 381, 1354
BamHI GGATCC 1 cut(s) 376
BanII GRGCYC 1 cut(s) 1731
BbsI GAAGAC 1 cut(s) 963
Bbv12I GWGCWC 2 cut(s) 1545, 1731
BbvCI CCTCAGC 1 cut(s) 649
BbvI GCAGC 7 cut(s) 183, 718, 799, 856, 976, 1045, 1629
BccI CCATC 8 cut(s) 53, 847, 964, 1190, 1378, 1511, 1717, 1761
BcgI CGANNNNNNTGC 2 cut(s) 1040, 1074
BciT130I CCWGG 3 cut(s) 174, 366, 1602
BcoDI GTCTC 6 cut(s) 633, 768, 1334, 1364, 1467, 1543
BcuI ACTAGT 2 cut(s) 359, 1001
BfaI CTAG 4 cut(s) 360, 512, 561, 1002
BfmI CTRYAG 4 cut(s) 222, 316, 393, 870
BfuAI ACCTGC 1 cut(s) 863
BglI GCCNNNNNGGC 1 cut(s) 1280
BglII AGATCT 1 cut(s) 1238
BisI GCNGC 8 cut(s) 197, 490, 732, 813, 870, 990, 1059, 1618
BlpI GCTNAGC 1 cut(s) 334
BlsI GCNGC 8 cut(s) 198, 491, 733, 814, 871, 991, 1060, 1619
Bme1390I CCNGG 3 cut(s) 174, 366, 1602
Bme18I GGWCC 2 cut(s) 459, 1203
BmgT120I GGNCC 2 cut(s) 459, 1203
BmiI GGNNCC 2 cut(s) 186, 378
BmrFI CCNGG 3 cut(s) 174, 366, 1602
BmsI GCATC 4 cut(s) 610, 662, 1261, 1292
BpiI GAAGAC 1 cut(s) 963
BpmI CTGGAG 3 cut(s) 237, 969, 1623
Bpu10I CCTNAGC 1 cut(s) 649
Bpu1102I GCTNAGC 1 cut(s) 334
BpuEI CTTGAG 3 cut(s) 937, 1006, 1529
BsaI GGTCTC 1 cut(s) 1364
BsaJI CCNNGG 3 cut(s) 173, 365, 462
BsaXI ACNNNNNCTCC 4 cut(s) 458, 488, 1447, 1477
Bsc4I CCNNNNNNNGG 3 cut(s) 578, 1382, 1472
Bse1I ACTGG 1 cut(s) 930
Bse21I CCTNAGG 2 cut(s) 381, 1354
Bse3DI GCAATG 1 cut(s) 235
BseBI CCWGG 3 cut(s) 174, 366, 1602
BseDI CCNNGG 3 cut(s) 173, 365, 462
BseGI GGATG 5 cut(s) 653, 750, 926, 956, 1753
BseLI CCNNNNNNNGG 3 cut(s) 578, 1382, 1472
BseMI GCAATG 1 cut(s) 235
BseMII CTCAG 5 cut(s) 372, 411, 663, 1292, 1368
BseNI ACTGG 1 cut(s) 930
BseRI GAGGAG 1 cut(s) 1412
BseXI GCAGC 7 cut(s) 183, 718, 799, 856, 976, 1045, 1629
BsgI GTGCAG 2 cut(s) 1553, 1636
BsiHKAI GWGCWC 2 cut(s) 1545, 1731
BslFI GGGAC 3 cut(s) 164, 545, 757
BslI CCNNNNNNNGG 3 cut(s) 578, 1382, 1472
BsmAI GTCTC 6 cut(s) 633, 768, 1334, 1364, 1467, 1543
BsmBI CGTCTC 2 cut(s) 633, 768
BsmFI GGGAC 3 cut(s) 164, 545, 757
BsmI GAATGC 1 cut(s) 1568
Bso31I GGTCTC 1 cut(s) 1364
Bsp1286I GDGCHC 2 cut(s) 1545, 1731
Bsp143I GATC 5 cut(s) 376, 1238, 1336, 1582, 1702
Bsp1720I GCTNAGC 1 cut(s) 334
BspACI CCGC 3 cut(s) 457, 489, 1620
BspCNI CTCAG 5 cut(s) 373, 412, 662, 1291, 1367
BspLI GGNNCC 2 cut(s) 186, 378
BspMAI CTGCAG 1 cut(s) 874
BspMI ACCTGC 1 cut(s) 863
BspPI GGATC 3 cut(s) 371, 384, 1577
BspQI GCTCTTC 1 cut(s) 186
BspTNI GGTCTC 1 cut(s) 1364
BsrDI GCAATG 1 cut(s) 235
BsrI ACTGG 1 cut(s) 930
BssECI CCNNGG 3 cut(s) 173, 365, 462
BssMI GATC 5 cut(s) 376, 1238, 1336, 1582, 1702
Bst2UI CCWGG 3 cut(s) 174, 366, 1602
Bst4CI ACNGT 5 cut(s) 82, 155, 1168, 1294, 1459
Bst6I CTCTTC 2 cut(s) 186, 808
BstAPI GCANNNNNTGC 3 cut(s) 869, 878, 1540
BstC8I GCNNGC 6 cut(s) 101, 508, 558, 729, 1416, 1430
BstDEI CTNAG 7 cut(s) 106, 334, 381, 420, 649, 1278, 1354
BstDSI CCRYGG 1 cut(s) 462
BstF5I GGATG 5 cut(s) 653, 750, 926, 956, 1753
BstKTI GATC 5 cut(s) 379, 1241, 1339, 1585, 1705
BstMAI GTCTC 6 cut(s) 633, 768, 1334, 1364, 1467, 1543
BstMBI GATC 5 cut(s) 376, 1238, 1336, 1582, 1702
BstMWI GCNNNNNNNGC 5 cut(s) 869, 878, 1181, 1280, 1540
BstNI CCWGG 3 cut(s) 174, 366, 1602
BstNSI RCATGY 2 cut(s) 1432, 1615
BstSCI CCNGG 3 cut(s) 172, 364, 1600
BstSFI CTRYAG 4 cut(s) 222, 316, 393, 870
BstV1I GCAGC 7 cut(s) 183, 718, 799, 856, 976, 1045, 1629
BstV2I GAAGAC 1 cut(s) 963
BstX2I RGATCY 3 cut(s) 376, 1238, 1582
BstYI RGATCY 3 cut(s) 376, 1238, 1582
Bsu36I CCTNAGG 2 cut(s) 381, 1354
BtgI CCRYGG 1 cut(s) 462
BtsCI GGATG 5 cut(s) 653, 750, 926, 956, 1753
BtsIMutI CAGTG 3 cut(s) 78, 160, 1464
BveI ACCTGC 1 cut(s) 863
Cac8I GCNNGC 6 cut(s) 101, 508, 558, 729, 1416, 1430
Cfr13I GGNCC 2 cut(s) 459, 1203
CseI GACGC 1 cut(s) 750
Csp6I GTAC 1 cut(s) 1295
CviAII CATG 3 cut(s) 1075, 1429, 1612
CviQI GTAC 1 cut(s) 1295
DdeI CTNAG 7 cut(s) 106, 334, 381, 420, 649, 1278, 1354
DpnI GATC 5 cut(s) 378, 1240, 1338, 1584, 1704
DpnII GATC 5 cut(s) 376, 1238, 1336, 1582, 1702
DraI TTTAAA 1 cut(s) 696
Eam1104I CTCTTC 2 cut(s) 186, 808
EarI CTCTTC 2 cut(s) 186, 808
Ecl136II GAGCTC 1 cut(s) 1729
Eco24I GRGCYC 1 cut(s) 1731
Eco31I GGTCTC 1 cut(s) 1364
Eco47I GGWCC 2 cut(s) 459, 1203
Eco53kI GAGCTC 1 cut(s) 1729
Eco57I CTGAAG 3 cut(s) 185, 210, 656
Eco81I CCTNAGG 2 cut(s) 381, 1354
EcoICRI GAGCTC 1 cut(s) 1729
EcoRII CCWGG 3 cut(s) 172, 364, 1600
EcoT38I GRGCYC 1 cut(s) 1731
Esp3I CGTCTC 2 cut(s) 633, 768
FaeI CATG 3 cut(s) 1078, 1432, 1615
FalI AAGNNNNNCTT 6 cut(s) 183, 215, 814, 846, 1370, 1402
FaqI GGGAC 3 cut(s) 164, 545, 757
FatI CATG 3 cut(s) 1074, 1428, 1611
FblI GTMKAC 2 cut(s) 476, 1163
Fnu4HI GCNGC 8 cut(s) 197, 490, 732, 813, 870, 990, 1059, 1618
FokI GGATG 5 cut(s) 640, 737, 913, 943, 1740
FriOI GRGCYC 1 cut(s) 1731
Fsp4HI GCNGC 8 cut(s) 197, 490, 732, 813, 870, 990, 1059, 1618
FspBI CTAG 4 cut(s) 360, 512, 561, 1002
GluI GCNGC 8 cut(s) 197, 490, 732, 813, 870, 990, 1059, 1618
GsuI CTGGAG 3 cut(s) 237, 969, 1623
HgaI GACGC 1 cut(s) 750
Hin1II CATG 3 cut(s) 1078, 1432, 1615
HincII GTYRAC 1 cut(s) 238
HindII GTYRAC 1 cut(s) 238
HindIII AAGCTT 1 cut(s) 1493
HpaI GTTAAC 1 cut(s) 238
HphI GGTGA 1 cut(s) 1365
Hpy166II GTNNAC 9 cut(s) 89, 238, 400, 462, 477, 601, 1152, 1164, 1171
Hpy8I GTNNAC 9 cut(s) 89, 238, 400, 462, 477, 601, 1152, 1164, 1171
HpyAV CCTTC 5 cut(s) 46, 169, 282, 576, 1667
HpyCH4III ACNGT 5 cut(s) 82, 155, 1168, 1294, 1459
HpyCH4IV ACGT 2 cut(s) 28, 122
HpyF10VI GCNNNNNNNGC 5 cut(s) 869, 878, 1181, 1280, 1540
HpyF3I CTNAG 7 cut(s) 106, 334, 381, 420, 649, 1278, 1354
HpySE526I ACGT 2 cut(s) 28, 122
Hsp92II CATG 3 cut(s) 1078, 1432, 1615
KspAI GTTAAC 1 cut(s) 238
Kzo9I GATC 5 cut(s) 376, 1238, 1336, 1582, 1702
LguI GCTCTTC 1 cut(s) 186
LmnI GCTCC 3 cut(s) 218, 1726, 1733
Lsp1109I GCAGC 7 cut(s) 183, 718, 799, 856, 976, 1045, 1629
LweI GCATC 4 cut(s) 610, 662, 1261, 1292
MaeI CTAG 4 cut(s) 360, 512, 561, 1002
MaeII ACGT 2 cut(s) 28, 122
MaeIII GTNAC 4 cut(s) 7, 423, 937, 1634
MalI GATC 5 cut(s) 378, 1240, 1338, 1584, 1704
MboI GATC 5 cut(s) 376, 1238, 1336, 1582, 1702
MflI RGATCY 3 cut(s) 376, 1238, 1582
MhlI GDGCHC 2 cut(s) 1545, 1731
MluCI AATT 8 cut(s) 115, 305, 386, 666, 965, 1031, 1668, 1759
MlyI GAGTC 6 cut(s) 94, 287, 431, 476, 889, 1240
MmeI TCCRAC 1 cut(s) 1285
MroXI GAANNNNTTC 1 cut(s) 1748
MseI TTAA 9 cut(s) 126, 237, 672, 695, 768, 795, 1070, 1497, 1679
MspA1I CMGCKG 3 cut(s) 812, 989, 1620
MspR9I CCNGG 3 cut(s) 174, 366, 1602
Mva1269I GAATGC 1 cut(s) 1568
MvaI CCWGG 3 cut(s) 174, 366, 1602
MwoI GCNNNNNNNGC 5 cut(s) 869, 878, 1181, 1280, 1540
NdeII GATC 5 cut(s) 376, 1238, 1336, 1582, 1702
NlaIII CATG 3 cut(s) 1078, 1432, 1615
NlaIV GGNNCC 2 cut(s) 186, 378
NmeAIII GCCGAG 1 cut(s) 610
NmuCI GTSAC 4 cut(s) 7, 423, 937, 1634
NspI RCATGY 2 cut(s) 1432, 1615
PaeI GCATGC 1 cut(s) 1432
PaqCI CACCTGC 1 cut(s) 863
PciI ACATGT 1 cut(s) 1611
PciSI GCTCTTC 1 cut(s) 186
PctI GAATGC 1 cut(s) 1568
PdmI GAANNNNTTC 1 cut(s) 1748
PfeI GAWTC 5 cut(s) 408, 1007, 1092, 1136, 1211
PfoI TCCNGGA 1 cut(s) 1600
PkrI GCNGC 8 cut(s) 198, 491, 733, 814, 871, 991, 1060, 1619
PleI GAGTC 6 cut(s) 93, 286, 430, 475, 889, 1239
PpsI GAGTC 6 cut(s) 93, 286, 430, 475, 889, 1239
PscI ACATGT 1 cut(s) 1611
Psp124BI GAGCTC 1 cut(s) 1731
Psp6I CCWGG 3 cut(s) 172, 364, 1600
PspGI CCWGG 3 cut(s) 172, 364, 1600
PspN4I GGNNCC 2 cut(s) 186, 378
PspPI GGNCC 2 cut(s) 459, 1203
PstI CTGCAG 1 cut(s) 874
PsuI RGATCY 3 cut(s) 376, 1238, 1582
PvuII CAGCTG 2 cut(s) 812, 989
RsaI GTAC 1 cut(s) 1296
RsaNI GTAC 1 cut(s) 1295
SacI GAGCTC 1 cut(s) 1731
SapI GCTCTTC 1 cut(s) 186
SaqAI TTAA 9 cut(s) 126, 237, 672, 695, 768, 795, 1070, 1497, 1679
SatI GCNGC 8 cut(s) 197, 490, 732, 813, 870, 990, 1059, 1618
Sau3AI GATC 5 cut(s) 376, 1238, 1336, 1582, 1702
Sau96I GGNCC 2 cut(s) 459, 1203
SchI GAGTC 6 cut(s) 94, 287, 431, 476, 889, 1240
ScrFI CCNGG 3 cut(s) 174, 366, 1602
SduI GDGCHC 2 cut(s) 1545, 1731
SfaNI GCATC 4 cut(s) 610, 662, 1261, 1292
SfcI CTRYAG 4 cut(s) 222, 316, 393, 870
SinI GGWCC 2 cut(s) 459, 1203
SmlI CTYRAG 3 cut(s) 916, 1021, 1544
SmoI CTYRAG 3 cut(s) 916, 1021, 1544
SpeI ACTAGT 2 cut(s) 359, 1001
SphI GCATGC 1 cut(s) 1432
Sse9I AATT 8 cut(s) 115, 305, 386, 666, 965, 1031, 1668, 1759
SsiI CCGC 3 cut(s) 457, 489, 1620
SspMI CTAG 4 cut(s) 360, 512, 561, 1002
SstI GAGCTC 1 cut(s) 1731
StyD4I CCNGG 3 cut(s) 172, 364, 1600
TaaI ACNGT 5 cut(s) 82, 155, 1168, 1294, 1459
TaiI ACGT 2 cut(s) 31, 125
TaqI TCGA 4 cut(s) 325, 445, 893, 1119
TasI AATT 8 cut(s) 115, 305, 386, 666, 965, 1031, 1668, 1759
TauI GCSGC 1 cut(s) 492
TfiI GAWTC 5 cut(s) 408, 1007, 1092, 1136, 1211
Tru1I TTAA 9 cut(s) 126, 237, 672, 695, 768, 795, 1070, 1497, 1679
Tru9I TTAA 9 cut(s) 126, 237, 672, 695, 768, 795, 1070, 1497, 1679
TscAI CASTG 3 cut(s) 85, 160, 1464
TseFI GTSAC 4 cut(s) 7, 423, 937, 1634
TseI GCWGC 7 cut(s) 196, 731, 812, 869, 989, 1058, 1617
Tsp45I GTSAC 4 cut(s) 7, 423, 937, 1634
TspGWI ACGGA 1 cut(s) 479
TspRI CASTG 3 cut(s) 85, 160, 1464
VpaK11BI GGWCC 2 cut(s) 459, 1203
XapI RAATTY 3 cut(s) 305, 666, 1031
XceI RCATGY 2 cut(s) 1432, 1615
XmiI GTMKAC 2 cut(s) 476, 1163
XmnI GAANNNNTTC 1 cut(s) 1748
XspI CTAG 4 cut(s) 360, 512, 561, 1002
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.