Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0005979

Physical Location & Seq

Genomic Coordinates Reverse (-)

16730111 .. 16734229

Gene Structure 4119 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g20640.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

ATGGTATCAACTAGACTAATGAAGATCATGGCGCCGTGTTGGAGACCTTCTGTTGTTGAAGGTGAAAATTCTAATAGAGCTGGGGATGCGAGTGGTCGAGTTGATGGTTTATTGTGGTACAAAGATTTAGGAACCCACGTTAATGGTGAATTCTCAATGGCAGTAATTCAAGCAAACAATTTGTTGGAAGACCATAGCCAACTTGAATCTGGACCGTTGAGCTTGCTTGAATCAGGTCCCAATGGAACATTTGTTGGAGTTTATGATGGACATGGAGGTCCAGAAGCAGCCCGATTTGTAAATGATCACCTGTTCAAGAATCTCAAGAAATTCACGTCAGAGAATCAGGGAATGTCAGCTGATGCTATCACCAAAGCATTCTTGGCAACTGAAGAGGAATTTCTATCTTTAGTAAGGAAGCAGTGGCTGATTAAGCCACTGCTTGCTTCAGTTGGTGCATGTTGCTTGGTAGGCATAGTATGTAGTGGGCTGCTATACATAGCAAATGCGGGAGATTCTCGGGCAGTGTTAGGAAGAATGGAAAAGACCGTTAGACAGGTAAAAGCTGTTCAGTTATCAGTTGAGCACAATGCAAGTATAGAATCTGTGAGAGAGGAACTGCACTCGTTGCATCCTGATGATCCACGGATTGTGGTAATGAAGCACAAGGTGTGGCGGGTGAAGGGTCTGATACAGATTTCAAGGTCCATTGGTGATGCCTACCTCAAAAGGCCGGAATTTAACAAAGAACCTCTGTTGGCAAAGTTTCGACTATCAGAACCCTTCCAAAAGCCGATCCTTAAAGCCGAGCCAACAATATTGGTGCGAAAACTGTACCCCGAAGATCAGTTTCTCATACTTGCATCAGATGGCCTATGGGAACAGTTGAGCAATCAGGAGGCAGTTGACATTGTTCAGAACTATCCACGTAATGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002831 GO:0002832 GO:0005575 GO:0005623 GO:0005886 GO:0008150 GO:0016020 GO:0031347 GO:0031348 GO:0032101 GO:0032102 GO:0043900 GO:0043901 GO:0044464 GO:0048519 GO:0048583 GO:0048585 GO:0050789 GO:0065007 GO:0071944 GO:0080134 GO:1900424 GO:1900425

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GST_C_2 PP2C

Protein Analysis

313

Amino Acids

34.7

Weight (kDa)

6.72

Isoelectric Point (pI)

35.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PP2C	PF00481	4 - 210	3.3e-31	Protein phosphatase 2C

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005979)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12620 AT3G12620 AT3G55050 AT3G55050
fragaria_vesca	FvH4_7g20640 FvH4_7g20640 FvH4_7g20640
malus_domestica	MD01G1115100.v1.1 MD07G1183100.v1.1
prunus_persica	Prupe.2G221800_v2.0.a1 Prupe.2G221800_v2.0.a1 Prupe.2G221800_v2.0.a1 Prupe.2G221800_v2.0.a1
pyrus_communis	pycom01g14400 pycom07g17570
rosa_chinensis	RchiOBHm_Chr1g0364671
rosa_laevigata	RLG00000027468
rosa_multiflora	Rmu_sc0024218.1_g000002
rosa_roxburghii	Rroxscaffold_4G00291760 Rroxscaffold_4G00292180
rosa_rugosa	Rorug01G0317500 Rorug01G0317600
rosa_samantha	Rh1AG326600 Rh1BG287800 Rh1CG304600 Rh1DG319500
rosa_wichuraiana	Rw1G028930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	276
AccB1I	GGYRCC	1 cut(s)	31
AciI	CCGC	2 cut(s)	509, 676
AclWI	GGATC	2 cut(s)	635, 790
AcsI	RAATTY	5 cut(s)	67, 149, 329, 398, 737
AcuI	CTGAAG	2 cut(s)	411, 432
AcyI	GRCGYC	1 cut(s)	32
AdeI	CACNNNGTG	1 cut(s)	670
AfaI	GTAC	2 cut(s)	119, 836
AgsI	TTSAA	6 cut(s)	59, 170, 206, 230, 316, 702
AjiI	CACGTC	1 cut(s)	336
AluBI	AGCT	4 cut(s)	80, 222, 359, 566
AluI	AGCT	4 cut(s)	80, 222, 359, 566
Alw21I	GWGCWC	1 cut(s)	588
Alw26I	GTCTC	1 cut(s)	37
AlwI	GGATC	2 cut(s)	635, 790
AlwNI	CAGNNNCTG	1 cut(s)	427
Ama87I	CYCGRG	1 cut(s)	519
AoxI	GGCC	2 cut(s)	731, 871
ApeKI	GCWGC	2 cut(s)	287, 490
ApoI	RAATTY	5 cut(s)	67, 149, 329, 398, 737
AspLEI	GCGC	1 cut(s)	34
AspS9I	GGNCC	4 cut(s)	212, 236, 278, 705
AsuHPI	GGTGA	6 cut(s)	74, 158, 299, 361, 691, 725
AvaI	CYCGRG	1 cut(s)	519
AvaII	GGWCC	4 cut(s)	212, 236, 278, 705
BanI	GGYRCC	1 cut(s)	31
BbsI	GAAGAC	1 cut(s)	195
Bbv12I	GWGCWC	1 cut(s)	588
BbvI	GCAGC	2 cut(s)	299, 477
BccI	CCATC	3 cut(s)	98, 260, 863
BceAI	ACGGC	1 cut(s)	19
BclI	TGATCA	1 cut(s)	304
BcoDI	GTCTC	1 cut(s)	37
BfaI	CTAG	1 cut(s)	12
BfoI	RGCGCY	1 cut(s)	35
BisI	GCNGC	2 cut(s)	288, 491
BlsI	GCNGC	2 cut(s)	289, 492
Bme18I	GGWCC	4 cut(s)	212, 236, 278, 705
BmeT110I	CYCGRG	1 cut(s)	519
BmgBI	CACGTC	1 cut(s)	336
BmgT120I	GGNCC	4 cut(s)	212, 236, 278, 705
BmiI	GGNNCC	3 cut(s)	33, 133, 238
BmsI	GCATC	5 cut(s)	76, 352, 640, 706, 872
BpiI	GAAGAC	1 cut(s)	195
BpuEI	CTTGAG	1 cut(s)	308
BsaAI	YACGTR	1 cut(s)	929
BsaHI	GRCGYC	1 cut(s)	32
BsaI	GGTCTC	1 cut(s)	37
BsaJI	CCNNGG	1 cut(s)	644
BseDI	CCNNGG	1 cut(s)	644
BseGI	GGATG	2 cut(s)	91, 631
BseXI	GCAGC	2 cut(s)	299, 477
BseYI	CCCAGC	1 cut(s)	80
BsgI	GTGCAG	1 cut(s)	605
BshFI	GGCC	2 cut(s)	733, 873
BshNI	GGYRCC	1 cut(s)	31
BsiHKAI	GWGCWC	1 cut(s)	588
BsiHKCI	CYCGRG	1 cut(s)	519
BsiSI	CCGG	1 cut(s)	734
BslFI	GGGAC	1 cut(s)	222
BsmAI	GTCTC	1 cut(s)	37
BsmFI	GGGAC	1 cut(s)	222
BsmI	GAATGC	1 cut(s)	377
BsnI	GGCC	2 cut(s)	733, 873
Bso31I	GGTCTC	1 cut(s)	37
BsoBI	CYCGRG	1 cut(s)	519
Bsp1286I	GDGCHC	1 cut(s)	588
Bsp143I	GATC	5 cut(s)	24, 304, 640, 795, 844
BspACI	CCGC	2 cut(s)	509, 676
BspANI	GGCC	2 cut(s)	733, 873
BspLI	GGNNCC	3 cut(s)	33, 133, 238
BspPI	GGATC	2 cut(s)	635, 790
BspT107I	GGYRCC	1 cut(s)	31
BspTNI	GGTCTC	1 cut(s)	37
BssECI	CCNNGG	1 cut(s)	644
BssMI	GATC	5 cut(s)	24, 304, 640, 795, 844
BssNI	GRCGYC	1 cut(s)	32
Bst4CI	ACNGT	4 cut(s)	216, 550, 834, 885
Bst6I	CTCTTC	1 cut(s)	387
BstACI	GRCGYC	1 cut(s)	32
BstAPI	GCANNNNNTGC	1 cut(s)	628
BstBAI	YACGTR	1 cut(s)	929
BstC8I	GCNNGC	2 cut(s)	224, 444
BstDSI	CCRYGG	1 cut(s)	644
BstF5I	GGATG	2 cut(s)	91, 631
BstH2I	RGCGCY	1 cut(s)	35
BstHHI	GCGC	1 cut(s)	34
BstKTI	GATC	5 cut(s)	27, 307, 643, 798, 847
BstMAI	GTCTC	1 cut(s)	37
BstMBI	GATC	5 cut(s)	24, 304, 640, 795, 844
BstMWI	GCNNNNNNNGC	5 cut(s)	86, 383, 433, 471, 628
BstNSI	RCATGY	1 cut(s)	462
BstV1I	GCAGC	2 cut(s)	299, 477
BstV2I	GAAGAC	1 cut(s)	195
BstXI	CCANNNNNNTGG	1 cut(s)	143
BsuRI	GGCC	2 cut(s)	733, 873
BtgI	CCRYGG	1 cut(s)	644
BtrI	CACGTC	1 cut(s)	336
BtsCI	GGATG	2 cut(s)	91, 631
BtsI	GCAGTG	3 cut(s)	428, 437, 531
BtsIMutI	CAGTG	3 cut(s)	428, 437, 531
Cac8I	GCNNGC	2 cut(s)	224, 444
CaiI	CAGNNNCTG	1 cut(s)	427
CfoI	GCGC	1 cut(s)	34
Cfr13I	GGNCC	4 cut(s)	212, 236, 278, 705
Csp6I	GTAC	2 cut(s)	118, 835
CviAII	CATG	3 cut(s)	28, 272, 459
CviQI	GTAC	2 cut(s)	118, 835
DinI	GGCGCC	1 cut(s)	33
DpnI	GATC	5 cut(s)	26, 306, 642, 797, 846
DpnII	GATC	5 cut(s)	24, 304, 640, 795, 844
DraIII	CACNNNGTG	1 cut(s)	670
DrdI	GACNNNNNNGTC	1 cut(s)	276
DseDI	GACNNNNNNGTC	1 cut(s)	276
Eam1104I	CTCTTC	1 cut(s)	387
EarI	CTCTTC	1 cut(s)	387
Eco31I	GGTCTC	1 cut(s)	37
Eco47I	GGWCC	4 cut(s)	212, 236, 278, 705
Eco57I	CTGAAG	2 cut(s)	411, 432
Eco88I	CYCGRG	1 cut(s)	519
EcoO109I	RGGNCCY	1 cut(s)	236
EcoRI	GAATTC	1 cut(s)	149
EgeI	GGCGCC	1 cut(s)	33
EheI	GGCGCC	1 cut(s)	33
FaeI	CATG	3 cut(s)	31, 275, 462
FaqI	GGGAC	1 cut(s)	222
FatI	CATG	3 cut(s)	27, 271, 458
FauI	CCCGC	2 cut(s)	502, 669
FbaI	TGATCA	1 cut(s)	304
Fnu4HI	GCNGC	2 cut(s)	288, 491
FokI	GGATG	2 cut(s)	98, 618
Fsp4HI	GCNGC	2 cut(s)	288, 491
FspBI	CTAG	1 cut(s)	12
GlaI	GCGC	1 cut(s)	33
GluI	GCNGC	2 cut(s)	288, 491
GsaI	CCCAGC	1 cut(s)	84
HaeII	RGCGCY	1 cut(s)	35
HaeIII	GGCC	2 cut(s)	733, 873
HapII	CCGG	1 cut(s)	734
HhaI	GCGC	1 cut(s)	34
Hin1I	GRCGYC	1 cut(s)	32
Hin1II	CATG	3 cut(s)	31, 275, 462
Hin6I	GCGC	1 cut(s)	32
HinP1I	GCGC	1 cut(s)	32
HincII	GTYRAC	1 cut(s)	907
HindII	GTYRAC	1 cut(s)	907
HinfI	GANTC	6 cut(s)	206, 230, 319, 343, 515, 602
HpaII	CCGG	1 cut(s)	734
HphI	GGTGA	6 cut(s)	74, 158, 299, 361, 691, 725
Hpy166II	GTNNAC	1 cut(s)	907
Hpy188I	TCNGA	5 cut(s)	340, 690, 778, 868, 918
Hpy188III	TCNNGA	6 cut(s)	210, 281, 316, 325, 635, 896
Hpy8I	GTNNAC	1 cut(s)	907
HpyAV	CCTTC	4 cut(s)	53, 57, 676, 793
HpyCH4III	ACNGT	4 cut(s)	216, 550, 834, 885
HpyCH4IV	ACGT	3 cut(s)	138, 335, 928
HpyCH4V	TGCA	5 cut(s)	458, 593, 622, 631, 863
HpyF10VI	GCNNNNNNNGC	5 cut(s)	86, 383, 433, 471, 628
HpySE526I	ACGT	3 cut(s)	138, 335, 928
Hsp92I	GRCGYC	1 cut(s)	32
Hsp92II	CATG	3 cut(s)	31, 275, 462
HspAI	GCGC	1 cut(s)	32
KasI	GGCGCC	1 cut(s)	31
Ksp22I	TGATCA	1 cut(s)	304
Kzo9I	GATC	5 cut(s)	24, 304, 640, 795, 844
Lsp1109I	GCAGC	2 cut(s)	299, 477
LweI	GCATC	5 cut(s)	76, 352, 640, 706, 872
MaeI	CTAG	1 cut(s)	12
MaeII	ACGT	3 cut(s)	138, 335, 928
MalI	GATC	5 cut(s)	26, 306, 642, 797, 846
MboI	GATC	5 cut(s)	24, 304, 640, 795, 844
MboII	GAAGA	5 cut(s)	34, 200, 404, 546, 854
MhlI	GDGCHC	1 cut(s)	588
MluCI	AATT	7 cut(s)	67, 149, 165, 178, 329, 398, 737
Mly113I	GGCGCC	1 cut(s)	32
MmeI	TCCRAC	3 cut(s)	20, 165, 235
MnlI	CCTC	6 cut(s)	269, 388, 607, 734, 762, 892
MseI	TTAA	4 cut(s)	141, 432, 741, 801
MslI	CAYNNNNRTG	2 cut(s)	141, 636
MspA1I	CMGCKG	1 cut(s)	359
MspI	CCGG	1 cut(s)	734
Mva1269I	GAATGC	1 cut(s)	377
MwoI	GCNNNNNNNGC	5 cut(s)	86, 383, 433, 471, 628
NarI	GGCGCC	1 cut(s)	32
NdeII	GATC	5 cut(s)	24, 304, 640, 795, 844
NlaIII	CATG	3 cut(s)	31, 275, 462
NlaIV	GGNNCC	3 cut(s)	33, 133, 238
NmeAIII	GCCGAG	1 cut(s)	832
NspI	RCATGY	1 cut(s)	462
PctI	GAATGC	1 cut(s)	377
PfeI	GAWTC	6 cut(s)	206, 230, 319, 343, 515, 602
PkrI	GCNGC	2 cut(s)	289, 492
PluTI	GGCGCC	1 cut(s)	35
Ppu21I	YACGTR	1 cut(s)	929
PpuMI	RGGWCCY	1 cut(s)	236
Psp5II	RGGWCCY	1 cut(s)	236
PspFI	CCCAGC	1 cut(s)	80
PspN4I	GGNNCC	3 cut(s)	33, 133, 238
PspPI	GGNCC	4 cut(s)	212, 236, 278, 705
PspPPI	RGGWCCY	1 cut(s)	236
PsrI	GAACNNNNNNTAC	2 cut(s)	552, 584
PstNI	CAGNNNCTG	1 cut(s)	427
PvuII	CAGCTG	1 cut(s)	359
RsaI	GTAC	2 cut(s)	119, 836
RsaNI	GTAC	2 cut(s)	118, 835
RseI	CAYNNNNRTG	2 cut(s)	141, 636
SaqAI	TTAA	4 cut(s)	141, 432, 741, 801
SatI	GCNGC	2 cut(s)	288, 491
Sau3AI	GATC	5 cut(s)	24, 304, 640, 795, 844
Sau96I	GGNCC	4 cut(s)	212, 236, 278, 705
SduI	GDGCHC	1 cut(s)	588
SfaNI	GCATC	5 cut(s)	76, 352, 640, 706, 872
SfoI	GGCGCC	1 cut(s)	33
SinI	GGWCC	4 cut(s)	212, 236, 278, 705
SmiMI	CAYNNNNRTG	2 cut(s)	141, 636
SmlI	CTYRAG	1 cut(s)	323
SmoI	CTYRAG	1 cut(s)	323
Sse9I	AATT	7 cut(s)	67, 149, 165, 178, 329, 398, 737
SsiI	CCGC	2 cut(s)	509, 676
SspDI	GGCGCC	1 cut(s)	31
SspI	AATATT	1 cut(s)	819
SspMI	CTAG	1 cut(s)	12
TaaI	ACNGT	4 cut(s)	216, 550, 834, 885
TaiI	ACGT	3 cut(s)	141, 338, 931
TaqI	TCGA	2 cut(s)	97, 769
TasI	AATT	7 cut(s)	67, 149, 165, 178, 329, 398, 737
TfiI	GAWTC	6 cut(s)	206, 230, 319, 343, 515, 602
Tru1I	TTAA	4 cut(s)	141, 432, 741, 801
Tru9I	TTAA	4 cut(s)	141, 432, 741, 801
TscAI	CASTG	3 cut(s)	428, 444, 531
TseI	GCWGC	2 cut(s)	287, 490
TspDTI	ATGAA	2 cut(s)	35, 674
TspGWI	ACGGA	1 cut(s)	661
TspRI	CASTG	3 cut(s)	428, 444, 531
VpaK11BI	GGWCC	4 cut(s)	212, 236, 278, 705
XapI	RAATTY	5 cut(s)	67, 149, 329, 398, 737
XceI	RCATGY	1 cut(s)	462
XcmI	CCANNNNNNNNNTGG	2 cut(s)	206, 379
XspI	CTAG	1 cut(s)	12

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.