Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0005979

Physical Location & Seq

Genomic Coordinates Reverse (-)

43604238 .. 43606811

Gene Structure 2574 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0317500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGAACGACCTCTCAAACGCGGTTCTGAGAGACCACCATACTAGTACCTTCAAGCCCATACCATCCCTTGTCCTCTACATTCTCATACCCATCTTTGTTTTAGGTCTCTCTGTCTCCATCTTCATTCTCATTGTCGTCCACAACGCACTCTTCTTCGTCTTCTTCCTTTTGCTCTCTGCTCTCGTCCTCGCTTTCATTCTCTGGAACACGCGTCATTGGGCTTCTAAAGCTGCAGTCTTGTTCTTTCTCAACTCTCTTCCTGAGTCTGACCTTCGCGTGGCTCAGCATGGAGAGCTGGTCAAGATCACTGGGCTTGTCTCATGTGGGAGTCTCTCCCTGGAATCTTCATATGAAAAGGCTACTAGATGTGTATATGCCTCTACTCTTTTATATGCATACAAGGGATTAACTCTTCAACCTAGAAATGTCAAGAGATCATGCTTCCAGTGGCACTTAGAATATTGTGAGAGATTCTCAACAGACTTTTTCTTGACTGATCGGAAATCTGGTCTTAGAGCTATTGTCAAAGCTGGTTCTGGTTGTAATCTTATCCCACTGGTCTTTGAGAGCAAACTTGTCAACACAAGAAAATGCAGAATCCTCTCTCCTCACTTGACGAAATGGTTACGTGAGAGAAATCTCTCAGCTGAATCCCGTCTGCTACGTCTGGAGGAAGGGTATGTACAAGAAGGAAGCACTGTGACTGTATTTGGCATGCTGCACAGAAATAATGAGATGACTACGATTGTTCAACCACCGGAAGTAATTTCCAGTGGTTGTCTATGGCGAAAACTGCTTCTCCCTGTTGACATTGATGGACTCATTCTAAGGGTCTCTCCGATGGCTGGGCAATCTGTCAACCAAAATTCTATACAACACCCAGAAAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002831 GO:0002832 GO:0005575 GO:0005623 GO:0005886 GO:0008150 GO:0016020 GO:0031347 GO:0031348 GO:0032101 GO:0032102 GO:0043900 GO:0043901 GO:0044464 GO:0048519 GO:0048583 GO:0048585 GO:0050789 GO:0065007 GO:0071944 GO:0080134 GO:1900424 GO:1900425

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GST_C_2 PP2C

Protein Analysis

296

Amino Acids

33.48

Weight (kDa)

9.32

Isoelectric Point (pI)

40.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005979)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12620 AT3G12620 AT3G55050 AT3G55050
fragaria_vesca	FvH4_7g20640 FvH4_7g20640 FvH4_7g20640
malus_domestica	MD01G1115100.v1.1 MD07G1183100.v1.1
prunus_persica	Prupe.2G221800_v2.0.a1 Prupe.2G221800_v2.0.a1 Prupe.2G221800_v2.0.a1 Prupe.2G221800_v2.0.a1
pyrus_communis	pycom01g14400 pycom07g17570
rosa_chinensis	RchiOBHm_Chr1g0364671
rosa_laevigata	RLG00000027468
rosa_multiflora	Rmu_sc0024218.1_g000002
rosa_roxburghii	Rroxscaffold_4G00291760 Rroxscaffold_4G00292180
rosa_rugosa	Rorug01G0317500 Rorug01G0317600
rosa_samantha	Rh1AG326600 Rh1BG287800 Rh1CG304600 Rh1DG319500
rosa_wichuraiana	Rw1G028930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	20, 211, 276
AciI	CCGC	1 cut(s)	20
AcsI	RAATTY	1 cut(s)	865
AfaI	GTAC	2 cut(s)	46, 684
AfiI	CCNNNNNNNGG	2 cut(s)	277, 845
AflIII	ACRYGT	1 cut(s)	209
AgsI	TTSAA	3 cut(s)	52, 416, 752
AhlI	ACTAGT	1 cut(s)	41
AjnI	CCWGG	1 cut(s)	336
AluBI	AGCT	5 cut(s)	230, 295, 518, 530, 647
AluI	AGCT	5 cut(s)	230, 295, 518, 530, 647
Alw26I	GTCTC	6 cut(s)	24, 110, 118, 322, 335, 838
ApeKI	GCWGC	2 cut(s)	230, 718
ApoI	RAATTY	1 cut(s)	865
BarI	GAAGNNNNNNTAC	2 cut(s)	666, 698
BbsI	GAAGAC	1 cut(s)	151
BbvI	GCAGC	2 cut(s)	217, 705
BccI	CCATC	5 cut(s)	70, 98, 125, 809, 835
BciT130I	CCWGG	1 cut(s)	338
BcoDI	GTCTC	6 cut(s)	24, 110, 118, 322, 335, 838
BcuI	ACTAGT	1 cut(s)	41
BfaI	CTAG	3 cut(s)	42, 363, 420
BfmI	CTRYAG	1 cut(s)	231
BisI	GCNGC	2 cut(s)	231, 719
BlpI	GCTNAGC	1 cut(s)	282
BlsI	GCNGC	2 cut(s)	232, 720
Bme1390I	CCNGG	1 cut(s)	338
BmrFI	CCNGG	1 cut(s)	338
BmrI	ACTGGG	1 cut(s)	318
BmuI	ACTGGG	1 cut(s)	318
BpiI	GAAGAC	1 cut(s)	151
BplI	GAGNNNNNCTC	2 cut(s)	458, 490
BpmI	CTGGAG	1 cut(s)	689
Bpu1102I	GCTNAGC	1 cut(s)	282
BsaAI	YACGTR	1 cut(s)	629
BsaI	GGTCTC	3 cut(s)	24, 110, 838
BsaJI	CCNNGG	1 cut(s)	336
BsaWI	WCCGGW	1 cut(s)	757
BsaXI	ACNNNNNCTCC	6 cut(s)	282, 312, 662, 692, 783, 813
Bsc4I	CCNNNNNNNGG	2 cut(s)	277, 845
Bse1I	ACTGG	4 cut(s)	313, 445, 561, 771
BseBI	CCWGG	1 cut(s)	338
BseDI	CCNNGG	1 cut(s)	336
BseGI	GGATG	1 cut(s)	62
BseLI	CCNNNNNNNGG	2 cut(s)	277, 845
BseMII	CTCAG	4 cut(s)	17, 252, 296, 657
BseNI	ACTGG	4 cut(s)	313, 445, 561, 771
BseRI	GAGGAG	1 cut(s)	597
BseXI	GCAGC	2 cut(s)	217, 705
BseYI	CCCAGC	1 cut(s)	845
BsgI	GTGCAG	1 cut(s)	704
Bsh1236I	CGCG	3 cut(s)	20, 211, 276
BsiSI	CCGG	1 cut(s)	758
BslI	CCNNNNNNNGG	2 cut(s)	277, 845
BsmAI	GTCTC	6 cut(s)	24, 110, 118, 322, 335, 838
Bso31I	GGTCTC	3 cut(s)	24, 110, 838
Bsp1407I	TGTACA	1 cut(s)	682
Bsp143I	GATC	3 cut(s)	303, 434, 496
Bsp1720I	GCTNAGC	1 cut(s)	282
BspACI	CCGC	1 cut(s)	20
BspCNI	CTCAG	4 cut(s)	18, 253, 295, 656
BspFNI	CGCG	3 cut(s)	20, 211, 276
BspMAI	CTGCAG	1 cut(s)	235
BspTNI	GGTCTC	3 cut(s)	24, 110, 838
BsrGI	TGTACA	1 cut(s)	682
BsrI	ACTGG	4 cut(s)	313, 445, 561, 771
BssECI	CCNNGG	1 cut(s)	336
BssMI	GATC	3 cut(s)	303, 434, 496
Bst2UI	CCWGG	1 cut(s)	338
Bst4CI	ACNGT	2 cut(s)	700, 706
Bst6I	CTCTTC	3 cut(s)	155, 261, 417
BstAUI	TGTACA	1 cut(s)	682
BstBAI	YACGTR	1 cut(s)	629
BstC8I	GCNNGC	1 cut(s)	716
BstDEI	CTNAG	7 cut(s)	26, 261, 282, 454, 512, 643, 827
BstF5I	GGATG	1 cut(s)	62
BstFNI	CGCG	3 cut(s)	20, 211, 276
BstKTI	GATC	3 cut(s)	306, 437, 499
BstMAI	GTCTC	6 cut(s)	24, 110, 118, 322, 335, 838
BstMBI	GATC	3 cut(s)	303, 434, 496
BstMWI	GCNNNNNNNGC	3 cut(s)	227, 292, 793
BstNI	CCWGG	1 cut(s)	338
BstNSI	RCATGY	1 cut(s)	718
BstSCI	CCNGG	1 cut(s)	336
BstSFI	CTRYAG	1 cut(s)	231
BstUI	CGCG	3 cut(s)	20, 211, 276
BstV1I	GCAGC	2 cut(s)	217, 705
BstV2I	GAAGAC	1 cut(s)	151
BtsCI	GGATG	1 cut(s)	62
BtsIMutI	CAGTG	5 cut(s)	306, 452, 554, 696, 778
Cac8I	GCNNGC	1 cut(s)	716
CseI	GACGC	1 cut(s)	200
Csp6I	GTAC	2 cut(s)	45, 683
CviAII	CATG	4 cut(s)	287, 321, 438, 715
CviQI	GTAC	2 cut(s)	45, 683
DdeI	CTNAG	7 cut(s)	26, 261, 282, 454, 512, 643, 827
DpnI	GATC	3 cut(s)	305, 436, 498
DpnII	GATC	3 cut(s)	303, 434, 496
Eam1104I	CTCTTC	3 cut(s)	155, 261, 417
EarI	CTCTTC	3 cut(s)	155, 261, 417
Eco31I	GGTCTC	3 cut(s)	24, 110, 838
EcoRII	CCWGG	1 cut(s)	336
EcoT22I	ATGCAT	1 cut(s)	397
FaeI	CATG	4 cut(s)	290, 324, 441, 718
FatI	CATG	4 cut(s)	286, 320, 437, 714
FauNDI	CATATG	1 cut(s)	349
Fnu4HI	GCNGC	2 cut(s)	231, 719
FokI	GGATG	1 cut(s)	49
Fsp4HI	GCNGC	2 cut(s)	231, 719
FspBI	CTAG	3 cut(s)	42, 363, 420
GluI	GCNGC	2 cut(s)	231, 719
GsaI	CCCAGC	1 cut(s)	849
GsuI	CTGGAG	1 cut(s)	689
HapII	CCGG	1 cut(s)	758
HgaI	GACGC	1 cut(s)	200
Hin1II	CATG	4 cut(s)	290, 324, 441, 718
HincII	GTYRAC	3 cut(s)	580, 808, 859
HindII	GTYRAC	3 cut(s)	580, 808, 859
HinfI	GANTC	7 cut(s)	263, 328, 341, 471, 597, 650, 819
HpaII	CCGG	1 cut(s)	758
Hpy166II	GTNNAC	4 cut(s)	139, 580, 808, 859
Hpy188I	TCNGA	4 cut(s)	27, 268, 501, 840
Hpy188III	TCNNGA	6 cut(s)	202, 260, 301, 430, 490, 668
Hpy8I	GTNNAC	4 cut(s)	139, 580, 808, 859
HpyAV	CCTTC	4 cut(s)	58, 281, 668, 683
HpyCH4III	ACNGT	2 cut(s)	700, 706
HpyCH4IV	ACGT	2 cut(s)	628, 664
HpyCH4V	TGCA	4 cut(s)	233, 395, 594, 721
HpyF10VI	GCNNNNNNNGC	3 cut(s)	227, 292, 793
HpyF3I	CTNAG	7 cut(s)	26, 261, 282, 454, 512, 643, 827
HpySE526I	ACGT	2 cut(s)	628, 664
Hsp92II	CATG	4 cut(s)	290, 324, 441, 718
Kzo9I	GATC	3 cut(s)	303, 434, 496
Lsp1109I	GCAGC	2 cut(s)	217, 705
MaeI	CTAG	3 cut(s)	42, 363, 420
MaeII	ACGT	2 cut(s)	628, 664
MaeIII	GTNAC	2 cut(s)	624, 700
MalI	GATC	3 cut(s)	305, 436, 498
MboI	GATC	3 cut(s)	303, 434, 496
MboII	GAAGA	8 cut(s)	112, 142, 145, 151, 154, 248, 336, 404
MluCI	AATT	2 cut(s)	765, 865
MluI	ACGCGT	1 cut(s)	209
MlyI	GAGTC	3 cut(s)	272, 337, 813
MnlI	CCTC	7 cut(s)	20, 83, 197, 388, 611, 618, 664
Mph1103I	ATGCAT	1 cut(s)	397
MseI	TTAA	1 cut(s)	407
MspA1I	CMGCKG	1 cut(s)	647
MspI	CCGG	1 cut(s)	758
MspR9I	CCNGG	1 cut(s)	338
MvaI	CCWGG	1 cut(s)	338
MvnI	CGCG	3 cut(s)	20, 211, 276
MwoI	GCNNNNNNNGC	3 cut(s)	227, 292, 793
NdeI	CATATG	1 cut(s)	349
NdeII	GATC	3 cut(s)	303, 434, 496
NlaIII	CATG	4 cut(s)	290, 324, 441, 718
NmuCI	GTSAC	1 cut(s)	700
NsiI	ATGCAT	1 cut(s)	397
NspI	RCATGY	1 cut(s)	718
PaeI	GCATGC	1 cut(s)	718
PfeI	GAWTC	4 cut(s)	341, 471, 597, 650
PkrI	GCNGC	2 cut(s)	232, 720
PleI	GAGTC	3 cut(s)	271, 336, 813
PpsI	GAGTC	3 cut(s)	271, 336, 813
Ppu21I	YACGTR	1 cut(s)	629
Psp6I	CCWGG	1 cut(s)	336
PspFI	CCCAGC	1 cut(s)	845
PspGI	CCWGG	1 cut(s)	336
PstI	CTGCAG	1 cut(s)	235
PvuII	CAGCTG	1 cut(s)	647
RsaI	GTAC	2 cut(s)	46, 684
RsaNI	GTAC	2 cut(s)	45, 683
SaqAI	TTAA	1 cut(s)	407
SatI	GCNGC	2 cut(s)	231, 719
Sau3AI	GATC	3 cut(s)	303, 434, 496
SchI	GAGTC	3 cut(s)	272, 337, 813
ScrFI	CCNGG	1 cut(s)	338
SfcI	CTRYAG	1 cut(s)	231
SpeI	ACTAGT	1 cut(s)	41
SphI	GCATGC	1 cut(s)	718
Sse9I	AATT	2 cut(s)	765, 865
SsiI	CCGC	1 cut(s)	20
SspI	AATATT	1 cut(s)	461
SspMI	CTAG	3 cut(s)	42, 363, 420
StyD4I	CCNGG	1 cut(s)	336
TaaI	ACNGT	2 cut(s)	700, 706
TaiI	ACGT	2 cut(s)	631, 667
TasI	AATT	2 cut(s)	765, 865
TatI	WGTACW	1 cut(s)	682
TfiI	GAWTC	4 cut(s)	341, 471, 597, 650
Tru1I	TTAA	1 cut(s)	407
Tru9I	TTAA	1 cut(s)	407
TscAI	CASTG	5 cut(s)	313, 452, 561, 703, 778
TseFI	GTSAC	1 cut(s)	700
TseI	GCWGC	2 cut(s)	230, 718
Tsp45I	GTSAC	1 cut(s)	700
TspDTI	ATGAA	5 cut(s)	17, 112, 184, 336, 366
TspRI	CASTG	5 cut(s)	313, 452, 561, 703, 778
XapI	RAATTY	1 cut(s)	865
XceI	RCATGY	1 cut(s)	718
XspI	CTAG	3 cut(s)	42, 363, 420
Zsp2I	ATGCAT	1 cut(s)	397

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.