Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0024218.1

Orthogroup ID

OG0005979

Physical Location & Seq

Genomic Coordinates Reverse (-)

3053 .. 4830

Gene Structure 1778 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0024218.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

atgtcagctgatgttatcaccaaagcattcttggcaaccgaagaggaatttctatctttagtaaggaagcagtggctgattaagccactgcttgcttcagttggtgcatgttgtttggtaggcatagtatgtcgtggactgctatacatagcaaatgcgggagattctcgggcggtgttaggaagactggaaaagaccgtcaaacaggtaaaagctgttcagttatcagttgagcacaatgcaagtatagaatctgtgagagaggaactgcactcgttgcatcccgatgatcctcagattgtggtaatgaagcacaaggtgtggcgcgtgaagggtctgatacagatttcaaggtccattggtgatgcctacctgaaaaggtcggaatttaacaaagaacctctgttggcaaagtttagactatcagaacccttccacaagccgatccttaaagctgagccaacaatattggtgcaaaaactctaccctgaagatcagtttctcatatttgcatcggatggcctatgggagcagctgagcaatcaggaggcagttgacattgttcagaactatccacgtcatggaattgcaaggagacttgtcaaagctgcactttgtgaagcagcaaagaagagagaaatgagatactcagacttgaaaaagatcgaccgaggggtgaggagacattttcacgacgacattaccgtaatagttctgttcctagatacacatctggtcagtcgtagccactcacacgggcatctgctttcaattaagggaggtagcggcgtccccgccaacacctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002831 GO:0002832 GO:0005575 GO:0005623 GO:0005886 GO:0008150 GO:0016020 GO:0031347 GO:0031348 GO:0032101 GO:0032102 GO:0043900 GO:0043901 GO:0044464 GO:0048519 GO:0048583 GO:0048585 GO:0050789 GO:0065007 GO:0071944 GO:0080134 GO:1900424 GO:1900425

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GST_C_2 PP2C

Protein Analysis

268

Amino Acids

30.19

Weight (kDa)

9.39

Isoelectric Point (pI)

42.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005979)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12620 AT3G12620 AT3G55050 AT3G55050
fragaria_vesca	FvH4_7g20640 FvH4_7g20640 FvH4_7g20640
malus_domestica	MD01G1115100.v1.1 MD07G1183100.v1.1
prunus_persica	Prupe.2G221800_v2.0.a1 Prupe.2G221800_v2.0.a1 Prupe.2G221800_v2.0.a1 Prupe.2G221800_v2.0.a1
pyrus_communis	pycom01g14400 pycom07g17570
rosa_chinensis	RchiOBHm_Chr1g0364671
rosa_laevigata	RLG00000027468
rosa_multiflora	Rmu_sc0024218.1_g000002
rosa_roxburghii	Rroxscaffold_4G00291760 Rroxscaffold_4G00292180
rosa_rugosa	Rorug01G0317500 Rorug01G0317600
rosa_samantha	Rh1AG326600 Rh1BG287800 Rh1CG304600 Rh1DG319500
rosa_wichuraiana	Rw1G028930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	581
AccII	CGCG	1 cut(s)	327
AciI	CCGC	4 cut(s)	158, 173, 786, 795
AclWI	GGATC	2 cut(s)	284, 439
AcsI	RAATTY	2 cut(s)	47, 386
AcuI	CTGAAG	2 cut(s)	81, 510
AcyI	GRCGYC	1 cut(s)	789
AdeI	CACNNNGTG	2 cut(s)	319, 617
AfiI	CCNNNNNNNGG	1 cut(s)	581
AgsI	TTSAA	3 cut(s)	351, 658, 771
AjiI	CACGTC	1 cut(s)	578
AluBI	AGCT	5 cut(s)	8, 215, 455, 535, 608
AluI	AGCT	5 cut(s)	8, 215, 455, 535, 608
Alw21I	GWGCWC	1 cut(s)	237
Alw26I	GTCTC	2 cut(s)	589, 676
AlwI	GGATC	2 cut(s)	284, 439
AlwNI	CAGNNNCTG	1 cut(s)	76
Ama87I	CYCGRG	1 cut(s)	168
AoxI	GGCC	1 cut(s)	520
ApeKI	GCWGC	3 cut(s)	532, 608, 623
ApoI	RAATTY	2 cut(s)	47, 386
AspLEI	GCGC	1 cut(s)	327
AspS9I	GGNCC	1 cut(s)	354
AsuHPI	GGTGA	3 cut(s)	10, 374, 688
AvaI	CYCGRG	1 cut(s)	168
AvaII	GGWCC	1 cut(s)	354
BbsI	GAAGAC	1 cut(s)	190
Bbv12I	GWGCWC	1 cut(s)	237
BbvI	GCAGC	3 cut(s)	544, 595, 635
BccI	CCATC	1 cut(s)	512
BcoDI	GTCTC	2 cut(s)	589, 676
BfaI	CTAG	2 cut(s)	722, 805
BisI	GCNGC	4 cut(s)	533, 609, 624, 787
BlpI	GCTNAGC	2 cut(s)	456, 536
BlsI	GCNGC	4 cut(s)	534, 610, 625, 788
Bme18I	GGWCC	1 cut(s)	354
BmeT110I	CYCGRG	1 cut(s)	168
BmgBI	CACGTC	1 cut(s)	578
BmgT120I	GGNCC	1 cut(s)	354
BmsI	GCATC	4 cut(s)	289, 355, 521, 769
BpiI	GAAGAC	1 cut(s)	190
Bpu1102I	GCTNAGC	2 cut(s)	456, 536
BsaBI	GATNNNNATC	1 cut(s)	729
BsaHI	GRCGYC	1 cut(s)	789
BsaJI	CCNNGG	1 cut(s)	670
Bsc4I	CCNNNNNNNGG	1 cut(s)	581
Bse1I	ACTGG	1 cut(s)	192
Bse8I	GATNNNNATC	1 cut(s)	729
BseDI	CCNNGG	1 cut(s)	670
BseGI	GGATG	2 cut(s)	280, 523
BseJI	GATNNNNATC	1 cut(s)	729
BseLI	CCNNNNNNNGG	1 cut(s)	581
BseMII	CTCAG	4 cut(s)	308, 447, 527, 663
BseNI	ACTGG	1 cut(s)	192
BseRI	GAGGAG	1 cut(s)	694
BseXI	GCAGC	3 cut(s)	544, 595, 635
BsgI	GTGCAG	2 cut(s)	254, 594
Bsh1236I	CGCG	1 cut(s)	327
Bsh1285I	CGRYCG	1 cut(s)	670
BshFI	GGCC	1 cut(s)	522
BsiEI	CGRYCG	1 cut(s)	670
BsiHKAI	GWGCWC	1 cut(s)	237
BsiHKCI	CYCGRG	1 cut(s)	168
BslFI	GGGAC	1 cut(s)	776
BslI	CCNNNNNNNGG	1 cut(s)	581
BsmAI	GTCTC	2 cut(s)	589, 676
BsmFI	GGGAC	1 cut(s)	776
BsmI	GAATGC	1 cut(s)	26
BsnI	GGCC	1 cut(s)	522
BsoBI	CYCGRG	1 cut(s)	168
Bsp1286I	GDGCHC	1 cut(s)	237
Bsp143I	GATC	4 cut(s)	289, 444, 493, 663
Bsp1720I	GCTNAGC	2 cut(s)	456, 536
BspACI	CCGC	4 cut(s)	158, 173, 786, 795
BspANI	GGCC	1 cut(s)	522
BspCNI	CTCAG	4 cut(s)	307, 448, 528, 662
BspFNI	CGCG	1 cut(s)	327
BspPI	GGATC	2 cut(s)	284, 439
BsrI	ACTGG	1 cut(s)	192
BssECI	CCNNGG	1 cut(s)	670
BssMI	GATC	4 cut(s)	289, 444, 493, 663
BssNI	GRCGYC	1 cut(s)	789
Bst4CI	ACNGT	2 cut(s)	199, 706
Bst6I	CTCTTC	2 cut(s)	36, 626
BstACI	GRCGYC	1 cut(s)	789
BstAPI	GCANNNNNTGC	1 cut(s)	277
BstC8I	GCNNGC	1 cut(s)	93
BstDEI	CTNAG	4 cut(s)	294, 456, 536, 649
BstF5I	GGATG	2 cut(s)	280, 523
BstFNI	CGCG	1 cut(s)	327
BstHHI	GCGC	1 cut(s)	327
BstKTI	GATC	4 cut(s)	292, 447, 496, 666
BstMAI	GTCTC	2 cut(s)	589, 676
BstMBI	GATC	4 cut(s)	289, 444, 493, 663
BstMCI	CGRYCG	1 cut(s)	670
BstMWI	GCNNNNNNNGC	3 cut(s)	32, 82, 277
BstNSI	RCATGY	1 cut(s)	111
BstUI	CGCG	1 cut(s)	327
BstV1I	GCAGC	3 cut(s)	544, 595, 635
BstV2I	GAAGAC	1 cut(s)	190
BsuRI	GGCC	1 cut(s)	522
BtrI	CACGTC	1 cut(s)	578
BtsCI	GGATG	2 cut(s)	280, 523
BtsI	GCAGTG	2 cut(s)	77, 86
BtsIMutI	CAGTG	2 cut(s)	77, 86
Cac8I	GCNNGC	1 cut(s)	93
CaiI	CAGNNNCTG	1 cut(s)	76
CfoI	GCGC	1 cut(s)	327
Cfr13I	GGNCC	1 cut(s)	354
CseI	GACGC	1 cut(s)	778
CviAII	CATG	2 cut(s)	108, 581
DdeI	CTNAG	4 cut(s)	294, 456, 536, 649
DpnI	GATC	4 cut(s)	291, 446, 495, 665
DpnII	GATC	4 cut(s)	289, 444, 493, 663
DraIII	CACNNNGTG	2 cut(s)	319, 617
Eam1104I	CTCTTC	2 cut(s)	36, 626
EarI	CTCTTC	2 cut(s)	36, 626
Eco47I	GGWCC	1 cut(s)	354
Eco57I	CTGAAG	2 cut(s)	81, 510
Eco88I	CYCGRG	1 cut(s)	168
FaeI	CATG	2 cut(s)	111, 584
FaiI	YATR	9 cut(s)	109, 125, 130, 145, 149, 248, 506, 526, 582
FalI	AAGNNNNNCTT	2 cut(s)	597, 629
FaqI	GGGAC	1 cut(s)	776
FatI	CATG	2 cut(s)	107, 580
FauI	CCCGC	2 cut(s)	151, 802
Fnu4HI	GCNGC	4 cut(s)	533, 609, 624, 787
FokI	GGATG	2 cut(s)	267, 530
Fsp4HI	GCNGC	4 cut(s)	533, 609, 624, 787
FspBI	CTAG	2 cut(s)	722, 805
GlaI	GCGC	1 cut(s)	326
GluI	GCNGC	4 cut(s)	533, 609, 624, 787
HaeIII	GGCC	1 cut(s)	522
HgaI	GACGC	1 cut(s)	778
HhaI	GCGC	1 cut(s)	327
Hin1I	GRCGYC	1 cut(s)	789
Hin1II	CATG	2 cut(s)	111, 584
Hin6I	GCGC	1 cut(s)	325
HinP1I	GCGC	1 cut(s)	325
HincII	GTYRAC	1 cut(s)	556
HindII	GTYRAC	1 cut(s)	556
HinfI	GANTC	2 cut(s)	164, 251
HphI	GGTGA	3 cut(s)	10, 374, 688
Hpy166II	GTNNAC	2 cut(s)	137, 556
Hpy188I	TCNGA	7 cut(s)	297, 339, 385, 427, 517, 567, 652
Hpy188III	TCNNGA	3 cut(s)	284, 545, 692
Hpy8I	GTNNAC	2 cut(s)	137, 556
Hpy99I	CGWCG	1 cut(s)	698
HpyAV	CCTTC	2 cut(s)	325, 442
HpyCH4III	ACNGT	2 cut(s)	199, 706
HpyCH4IV	ACGT	1 cut(s)	577
HpyCH4V	TGCA	8 cut(s)	107, 242, 271, 280, 475, 512, 590, 611
HpyF10VI	GCNNNNNNNGC	3 cut(s)	32, 82, 277
HpyF3I	CTNAG	4 cut(s)	294, 456, 536, 649
HpySE526I	ACGT	1 cut(s)	577
Hsp92I	GRCGYC	1 cut(s)	789
Hsp92II	CATG	2 cut(s)	111, 584
HspAI	GCGC	1 cut(s)	325
Kzo9I	GATC	4 cut(s)	289, 444, 493, 663
LmnI	GCTCC	1 cut(s)	529
LpnPI	CCDG	6 cut(s)	173, 191, 386, 501, 530, 719
Lsp1109I	GCAGC	3 cut(s)	544, 595, 635
LweI	GCATC	4 cut(s)	289, 355, 521, 769
MaeI	CTAG	2 cut(s)	722, 805
MaeII	ACGT	1 cut(s)	577
MalI	GATC	4 cut(s)	291, 446, 495, 665
MboI	GATC	4 cut(s)	289, 444, 493, 663
MboII	GAAGA	4 cut(s)	53, 195, 503, 643
MhlI	GDGCHC	1 cut(s)	237
MluCI	AATT	4 cut(s)	47, 386, 585, 771
MmeI	TCCRAC	1 cut(s)	363
MnlI	CCTC	8 cut(s)	37, 256, 303, 411, 541, 665, 672, 773
MseI	TTAA	4 cut(s)	81, 390, 450, 774
MslI	CAYNNNNRTG	1 cut(s)	285
MspA1I	CMGCKG	2 cut(s)	8, 535
Mva1269I	GAATGC	1 cut(s)	26
MvnI	CGCG	1 cut(s)	327
MwoI	GCNNNNNNNGC	3 cut(s)	32, 82, 277
NdeII	GATC	4 cut(s)	289, 444, 493, 663
NlaIII	CATG	2 cut(s)	111, 584
NspI	RCATGY	1 cut(s)	111
PcsI	WCGNNNNNNNCGW	1 cut(s)	702
PctI	GAATGC	1 cut(s)	26
PfeI	GAWTC	2 cut(s)	164, 251
PflMI	CCANNNNNTGG	1 cut(s)	581
PkrI	GCNGC	4 cut(s)	534, 610, 625, 788
PspPI	GGNCC	1 cut(s)	354
PsrI	GAACNNNNNNTAC	2 cut(s)	201, 233
PstNI	CAGNNNCTG	1 cut(s)	76
PvuII	CAGCTG	2 cut(s)	8, 535
RseI	CAYNNNNRTG	1 cut(s)	285
SaqAI	TTAA	4 cut(s)	81, 390, 450, 774
SatI	GCNGC	4 cut(s)	533, 609, 624, 787
Sau3AI	GATC	4 cut(s)	289, 444, 493, 663
Sau96I	GGNCC	1 cut(s)	354
SduI	GDGCHC	1 cut(s)	237
SfaNI	GCATC	4 cut(s)	289, 355, 521, 769
SinI	GGWCC	1 cut(s)	354
SmiMI	CAYNNNNRTG	1 cut(s)	285
Sse9I	AATT	4 cut(s)	47, 386, 585, 771
SsiI	CCGC	4 cut(s)	158, 173, 786, 795
SspI	AATATT	1 cut(s)	468
SspMI	CTAG	2 cut(s)	722, 805
TaaI	ACNGT	2 cut(s)	199, 706
TaiI	ACGT	1 cut(s)	580
TaqI	TCGA	1 cut(s)	666
TaqII	GACCGA	1 cut(s)	684
TasI	AATT	4 cut(s)	47, 386, 585, 771
TauI	GCSGC	1 cut(s)	789
TfiI	GAWTC	2 cut(s)	164, 251
Tru1I	TTAA	4 cut(s)	81, 390, 450, 774
Tru9I	TTAA	4 cut(s)	81, 390, 450, 774
TscAI	CASTG	2 cut(s)	77, 93
TseI	GCWGC	3 cut(s)	532, 608, 623
TspDTI	ATGAA	1 cut(s)	323
TspRI	CASTG	2 cut(s)	77, 93
Van91I	CCANNNNNTGG	1 cut(s)	581
VpaK11BI	GGWCC	1 cut(s)	354
XapI	RAATTY	2 cut(s)	47, 386
XceI	RCATGY	1 cut(s)	111
XcmI	CCANNNNNNNNNTGG	1 cut(s)	28
XspI	CTAG	2 cut(s)	722, 805

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.