Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0005979

Physical Location & Seq

Genomic Coordinates Forward (+)

11930678 .. 11933443

Gene Structure 2766 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000027468

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1128 bp

ATGGCACCGTGTTGGAGACCTTCTGTTGAAGGTGAAAATTCTAATAGAGCTGGGGATGCGAGTGGTCGAGTTAATGGTTTATTGTGGTATAAAGATTTGGGAAACCATGTTAATGGTGAATTCTCGATGGCAGTAATTCAAGCAAACAATTTGTTGGAAGACCATAGCCAACTTGAATCTGGACCGTTGAGCTTGCTCGAATCAGGTCCCCATGGAACATTTGTTGGAGTTTATGATGGACATGGAGGTCCAGAAGCAGCCCGATTTGTAAATGATCACCTGTTCAAGAATCTCAAGAAATTCACATCAGAGATTCAGGGAATGTCAGCTGATGTTATCACCAAAGCATTCTTGGCAACCGAAGAGGAATTTCTATCTTTAGTAAGGAAGCAGTGGCTGATTAAGCCACTGCTTGCTTCGGTTGGTGCATGTTGTTTGGTAGGCATAGTATGTCGTGGACTGCTATACATAGCAAATGCGGGAGATTCTCGGGCGGTGTTAGGAAGACTGGAAAAGACCGTCAAACAGGTAAAAGCTGTTCAGTTATCAGTTGAGCACAATGCAAGTATAGAATCTGTGAGAGAGGAACTGCACTCGTTGCATCCCGATGATCCTCGGATTGTGGTAATGAAGCACAAGGTGTGGCGTGTGAAGGGTCTGATACAGATTTCAAGGTCCATTGGTGATGCCTACCTGAAAAGGTCGGAATTTAACAAAGAACCTCTGTTGGCAAAGTTTAGACTATCAGAACCCTTCCACAAGCCGATCCTTAAAGCTGAGCCAACAATATTGGTGCAAAAACTCTACCCTGAAGACCAGTTTCTCATATTTGCATCGGATGGCCTGTGGGAGCAGCTGAGTAATCAGGAGGCAGTTGACATTGTTCAGAACTATCCACGTAATGGAATTGCAAGGAGACTTGTCAAAGCTGCACTTCGTGAAGCAGCAAAGAAGAGAGAAATGAGATACTCAGACTTGAAAAAGATCGACCGAGGGGTGAGGAGACATTTTCACGACGATATTACAGTAATAGTTCTGTTCCTAGATACACATCTGGTCAGTCGTAGCCACTCACACGGGCATCTGCTTTCAATTAAGGGAGGTACCGGCGTCCCCGCCAACACCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002831 GO:0002832 GO:0005575 GO:0005623 GO:0005886 GO:0008150 GO:0016020 GO:0031347 GO:0031348 GO:0032101 GO:0032102 GO:0043900 GO:0043901 GO:0044464 GO:0048519 GO:0048583 GO:0048585 GO:0050789 GO:0065007 GO:0071944 GO:0080134 GO:1900424 GO:1900425

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GST_C_2 PP2C

Protein Analysis

376

Amino Acids

41.84

Weight (kDa)

9.01

Isoelectric Point (pI)

36.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PP2C	PF00481	68 - 317	6.1e-36	Protein phosphatase 2C

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005979)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12620 AT3G12620 AT3G55050 AT3G55050
fragaria_vesca	FvH4_7g20640 FvH4_7g20640 FvH4_7g20640
malus_domestica	MD01G1115100.v1.1 MD07G1183100.v1.1
prunus_persica	Prupe.2G221800_v2.0.a1 Prupe.2G221800_v2.0.a1 Prupe.2G221800_v2.0.a1 Prupe.2G221800_v2.0.a1
pyrus_communis	pycom01g14400 pycom07g17570
rosa_chinensis	RchiOBHm_Chr1g0364671
rosa_laevigata	RLG00000027468
rosa_multiflora	Rmu_sc0024218.1_g000002
rosa_roxburghii	Rroxscaffold_4G00291760 Rroxscaffold_4G00292180
rosa_rugosa	Rorug01G0317500 Rorug01G0317600
rosa_samantha	Rh1AG326600 Rh1BG287800 Rh1CG304600 Rh1DG319500
rosa_wichuraiana	Rw1G028930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	246
Acc65I	GGTACC	1 cut(s)	1103
AccB1I	GGYRCC	2 cut(s)	4, 1103
AccB7I	CCANNNNNTGG	1 cut(s)	902
AciI	CCGC	3 cut(s)	479, 494, 1116
AclWI	GGATC	2 cut(s)	605, 760
AcsI	RAATTY	5 cut(s)	37, 119, 299, 368, 707
AcuI	CTGAAG	1 cut(s)	831
AcyI	GRCGYC	1 cut(s)	1110
AdeI	CACNNNGTG	2 cut(s)	640, 938
AfaI	GTAC	1 cut(s)	1105
AfiI	CCNNNNNNNGG	1 cut(s)	902
AgsI	TTSAA	7 cut(s)	29, 140, 176, 286, 672, 979, 1092
AluBI	AGCT	7 cut(s)	50, 192, 329, 536, 776, 856, 929
AluI	AGCT	7 cut(s)	50, 192, 329, 536, 776, 856, 929
Alw21I	GWGCWC	1 cut(s)	558
Alw26I	GTCTC	3 cut(s)	10, 910, 997
AlwI	GGATC	2 cut(s)	605, 760
AlwNI	CAGNNNCTG	1 cut(s)	397
Ama87I	CYCGRG	1 cut(s)	489
AoxI	GGCC	1 cut(s)	841
ApeKI	GCWGC	4 cut(s)	257, 853, 929, 944
ApoI	RAATTY	5 cut(s)	37, 119, 299, 368, 707
Asp718I	GGTACC	1 cut(s)	1103
AspS9I	GGNCC	4 cut(s)	182, 206, 248, 675
AsuHPI	GGTGA	6 cut(s)	44, 128, 269, 331, 695, 1009
AvaI	CYCGRG	1 cut(s)	489
AvaII	GGWCC	4 cut(s)	182, 206, 248, 675
BaeI	ACNNNNGTAYC	2 cut(s)	1095, 1128
BanI	GGYRCC	2 cut(s)	4, 1103
BbsI	GAAGAC	3 cut(s)	165, 511, 819
Bbv12I	GWGCWC	1 cut(s)	558
BbvI	GCAGC	4 cut(s)	269, 865, 916, 956
BccI	CCATC	3 cut(s)	121, 230, 833
BclI	TGATCA	1 cut(s)	274
BcoDI	GTCTC	3 cut(s)	10, 910, 997
BfaI	CTAG	2 cut(s)	1043, 1126
BisI	GCNGC	4 cut(s)	258, 854, 930, 945
BlpI	GCTNAGC	1 cut(s)	777
BlsI	GCNGC	4 cut(s)	259, 855, 931, 946
Bme18I	GGWCC	4 cut(s)	182, 206, 248, 675
BmeT110I	CYCGRG	1 cut(s)	489
BmgT120I	GGNCC	4 cut(s)	182, 206, 248, 675
BmiI	GGNNCC	3 cut(s)	6, 208, 1105
BmsI	GCATC	5 cut(s)	46, 610, 676, 842, 1090
BpiI	GAAGAC	3 cut(s)	165, 511, 819
Bpu1102I	GCTNAGC	1 cut(s)	777
BpuEI	CTTGAG	1 cut(s)	278
BsaAI	YACGTR	1 cut(s)	899
BsaBI	GATNNNNATC	1 cut(s)	1050
BsaHI	GRCGYC	1 cut(s)	1110
BsaI	GGTCTC	1 cut(s)	10
BsaJI	CCNNGG	3 cut(s)	211, 614, 991
Bsc4I	CCNNNNNNNGG	1 cut(s)	902
Bse118I	RCCGGY	1 cut(s)	1106
Bse1I	ACTGG	2 cut(s)	513, 817
Bse8I	GATNNNNATC	1 cut(s)	1050
BseDI	CCNNGG	3 cut(s)	211, 614, 991
BseGI	GGATG	3 cut(s)	61, 601, 844
BseJI	GATNNNNATC	1 cut(s)	1050
BseLI	CCNNNNNNNGG	1 cut(s)	902
BseMII	CTCAG	3 cut(s)	768, 848, 984
BseNI	ACTGG	2 cut(s)	513, 817
BseRI	GAGGAG	1 cut(s)	1015
BseXI	GCAGC	4 cut(s)	269, 865, 916, 956
BseYI	CCCAGC	1 cut(s)	50
BsgI	GTGCAG	2 cut(s)	575, 915
Bsh1285I	CGRYCG	1 cut(s)	991
BshFI	GGCC	1 cut(s)	843
BshNI	GGYRCC	2 cut(s)	4, 1103
BsiEI	CGRYCG	1 cut(s)	991
BsiHKAI	GWGCWC	1 cut(s)	558
BsiHKCI	CYCGRG	1 cut(s)	489
BsiSI	CCGG	1 cut(s)	1107
BslFI	GGGAC	2 cut(s)	192, 1097
BslI	CCNNNNNNNGG	1 cut(s)	902
BsmAI	GTCTC	3 cut(s)	10, 910, 997
BsmFI	GGGAC	2 cut(s)	192, 1097
BsmI	GAATGC	1 cut(s)	347
BsnI	GGCC	1 cut(s)	843
Bso31I	GGTCTC	1 cut(s)	10
BsoBI	CYCGRG	1 cut(s)	489
Bsp1286I	GDGCHC	1 cut(s)	558
Bsp143I	GATC	4 cut(s)	274, 610, 765, 984
Bsp1720I	GCTNAGC	1 cut(s)	777
Bsp19I	CCATGG	1 cut(s)	211
BspACI	CCGC	3 cut(s)	479, 494, 1116
BspANI	GGCC	1 cut(s)	843
BspCNI	CTCAG	3 cut(s)	769, 849, 983
BspLI	GGNNCC	3 cut(s)	6, 208, 1105
BspPI	GGATC	2 cut(s)	605, 760
BspT107I	GGYRCC	2 cut(s)	4, 1103
BspTNI	GGTCTC	1 cut(s)	10
BsrFI	RCCGGY	1 cut(s)	1106
BsrI	ACTGG	2 cut(s)	513, 817
BssAI	RCCGGY	1 cut(s)	1106
BssECI	CCNNGG	3 cut(s)	211, 614, 991
BssMI	GATC	4 cut(s)	274, 610, 765, 984
BssNI	GRCGYC	1 cut(s)	1110
BssT1I	CCWWGG	1 cut(s)	211
Bst4CI	ACNGT	4 cut(s)	9, 186, 520, 1027
Bst6I	CTCTTC	2 cut(s)	357, 947
BstACI	GRCGYC	1 cut(s)	1110
BstAPI	GCANNNNNTGC	1 cut(s)	598
BstBAI	YACGTR	1 cut(s)	899
BstC8I	GCNNGC	2 cut(s)	194, 414
BstDEI	CTNAG	3 cut(s)	777, 857, 970
BstDSI	CCRYGG	1 cut(s)	211
BstF5I	GGATG	3 cut(s)	61, 601, 844
BstKTI	GATC	4 cut(s)	277, 613, 768, 987
BstMAI	GTCTC	3 cut(s)	10, 910, 997
BstMBI	GATC	4 cut(s)	274, 610, 765, 984
BstMCI	CGRYCG	1 cut(s)	991
BstMWI	GCNNNNNNNGC	4 cut(s)	56, 353, 403, 598
BstNSI	RCATGY	1 cut(s)	432
BstV1I	GCAGC	4 cut(s)	269, 865, 916, 956
BstV2I	GAAGAC	3 cut(s)	165, 511, 819
BstXI	CCANNNNNNTGG	1 cut(s)	113
BsuRI	GGCC	1 cut(s)	843
BtgI	CCRYGG	1 cut(s)	211
BtsCI	GGATG	3 cut(s)	61, 601, 844
BtsI	GCAGTG	2 cut(s)	398, 407
BtsIMutI	CAGTG	2 cut(s)	398, 407
Cac8I	GCNNGC	2 cut(s)	194, 414
CaiI	CAGNNNCTG	1 cut(s)	397
Cfr10I	RCCGGY	1 cut(s)	1106
Cfr13I	GGNCC	4 cut(s)	182, 206, 248, 675
CseI	GACGC	1 cut(s)	1099
Csp6I	GTAC	1 cut(s)	1104
CviAII	CATG	4 cut(s)	107, 212, 242, 429
CviQI	GTAC	1 cut(s)	1104
DdeI	CTNAG	3 cut(s)	777, 857, 970
DpnI	GATC	4 cut(s)	276, 612, 767, 986
DpnII	GATC	4 cut(s)	274, 610, 765, 984
DraIII	CACNNNGTG	2 cut(s)	640, 938
DrdI	GACNNNNNNGTC	1 cut(s)	246
DseDI	GACNNNNNNGTC	1 cut(s)	246
Eam1104I	CTCTTC	2 cut(s)	357, 947
EarI	CTCTTC	2 cut(s)	357, 947
Eco130I	CCWWGG	1 cut(s)	211
Eco31I	GGTCTC	1 cut(s)	10
Eco47I	GGWCC	4 cut(s)	182, 206, 248, 675
Eco57I	CTGAAG	1 cut(s)	831
Eco88I	CYCGRG	1 cut(s)	489
EcoO109I	RGGNCCY	1 cut(s)	206
EcoRI	GAATTC	1 cut(s)	119
EcoT14I	CCWWGG	1 cut(s)	211
ErhI	CCWWGG	1 cut(s)	211
FaeI	CATG	4 cut(s)	110, 215, 245, 432
FalI	AAGNNNNNCTT	2 cut(s)	918, 950
FaqI	GGGAC	2 cut(s)	192, 1097
FatI	CATG	4 cut(s)	106, 211, 241, 428
FauI	CCCGC	2 cut(s)	472, 1123
FbaI	TGATCA	1 cut(s)	274
Fnu4HI	GCNGC	4 cut(s)	258, 854, 930, 945
FokI	GGATG	3 cut(s)	68, 588, 851
Fsp4HI	GCNGC	4 cut(s)	258, 854, 930, 945
FspBI	CTAG	2 cut(s)	1043, 1126
GluI	GCNGC	4 cut(s)	258, 854, 930, 945
GsaI	CCCAGC	1 cut(s)	54
HaeIII	GGCC	1 cut(s)	843
HapII	CCGG	1 cut(s)	1107
HgaI	GACGC	1 cut(s)	1099
Hin1I	GRCGYC	1 cut(s)	1110
Hin1II	CATG	4 cut(s)	110, 215, 245, 432
HincII	GTYRAC	1 cut(s)	877
HindII	GTYRAC	1 cut(s)	877
HinfI	GANTC	6 cut(s)	176, 200, 289, 313, 485, 572
HpaII	CCGG	1 cut(s)	1107
HphI	GGTGA	6 cut(s)	44, 128, 269, 331, 695, 1009
Hpy166II	GTNNAC	2 cut(s)	458, 877
Hpy188I	TCNGA	8 cut(s)	310, 618, 660, 706, 748, 838, 888, 973
Hpy188III	TCNNGA	9 cut(s)	124, 180, 251, 286, 295, 605, 866, 938, 1013
Hpy8I	GTNNAC	2 cut(s)	458, 877
Hpy99I	CGWCG	1 cut(s)	1019
HpyAV	CCTTC	4 cut(s)	23, 30, 646, 763
HpyCH4III	ACNGT	4 cut(s)	9, 186, 520, 1027
HpyCH4IV	ACGT	1 cut(s)	898
HpyCH4V	TGCA	8 cut(s)	428, 563, 592, 601, 796, 833, 911, 932
HpyF10VI	GCNNNNNNNGC	4 cut(s)	56, 353, 403, 598
HpyF3I	CTNAG	3 cut(s)	777, 857, 970
HpySE526I	ACGT	1 cut(s)	898
Hsp92I	GRCGYC	1 cut(s)	1110
Hsp92II	CATG	4 cut(s)	110, 215, 245, 432
KpnI	GGTACC	1 cut(s)	1107
Ksp22I	TGATCA	1 cut(s)	274
Kzo9I	GATC	4 cut(s)	274, 610, 765, 984
LmnI	GCTCC	1 cut(s)	850
Lsp1109I	GCAGC	4 cut(s)	269, 865, 916, 956
LweI	GCATC	5 cut(s)	46, 610, 676, 842, 1090
MaeI	CTAG	2 cut(s)	1043, 1126
MaeII	ACGT	1 cut(s)	898
MalI	GATC	4 cut(s)	276, 612, 767, 986
MboI	GATC	4 cut(s)	274, 610, 765, 984
MboII	GAAGA	5 cut(s)	170, 374, 516, 824, 964
MhlI	GDGCHC	1 cut(s)	558
MluCI	AATT	9 cut(s)	37, 119, 135, 148, 299, 368, 707, 906, 1092
MmeI	TCCRAC	3 cut(s)	135, 205, 684
MnlI	CCTC	9 cut(s)	239, 358, 577, 624, 732, 862, 986, 993, 1094
MseI	TTAA	6 cut(s)	72, 111, 402, 711, 771, 1095
MslI	CAYNNNNRTG	2 cut(s)	111, 606
MspA1I	CMGCKG	2 cut(s)	329, 856
MspI	CCGG	1 cut(s)	1107
Mva1269I	GAATGC	1 cut(s)	347
MwoI	GCNNNNNNNGC	4 cut(s)	56, 353, 403, 598
NcoI	CCATGG	1 cut(s)	211
NdeII	GATC	4 cut(s)	274, 610, 765, 984
NlaIII	CATG	4 cut(s)	110, 215, 245, 432
NlaIV	GGNNCC	3 cut(s)	6, 208, 1105
NspI	RCATGY	1 cut(s)	432
PctI	GAATGC	1 cut(s)	347
PfeI	GAWTC	6 cut(s)	176, 200, 289, 313, 485, 572
PflMI	CCANNNNNTGG	1 cut(s)	902
PkrI	GCNGC	4 cut(s)	259, 855, 931, 946
Ppu21I	YACGTR	1 cut(s)	899
PpuMI	RGGWCCY	1 cut(s)	206
Psp5II	RGGWCCY	1 cut(s)	206
PspFI	CCCAGC	1 cut(s)	50
PspN4I	GGNNCC	3 cut(s)	6, 208, 1105
PspPI	GGNCC	4 cut(s)	182, 206, 248, 675
PspPPI	RGGWCCY	1 cut(s)	206
PsrI	GAACNNNNNNTAC	2 cut(s)	522, 554
PstNI	CAGNNNCTG	1 cut(s)	397
PvuII	CAGCTG	2 cut(s)	329, 856
RsaI	GTAC	1 cut(s)	1105
RsaNI	GTAC	1 cut(s)	1104
RseI	CAYNNNNRTG	2 cut(s)	111, 606
SaqAI	TTAA	6 cut(s)	72, 111, 402, 711, 771, 1095
SatI	GCNGC	4 cut(s)	258, 854, 930, 945
Sau3AI	GATC	4 cut(s)	274, 610, 765, 984
Sau96I	GGNCC	4 cut(s)	182, 206, 248, 675
SduI	GDGCHC	1 cut(s)	558
SfaNI	GCATC	5 cut(s)	46, 610, 676, 842, 1090
SinI	GGWCC	4 cut(s)	182, 206, 248, 675
SmiMI	CAYNNNNRTG	2 cut(s)	111, 606
SmlI	CTYRAG	1 cut(s)	293
SmoI	CTYRAG	1 cut(s)	293
Sse9I	AATT	9 cut(s)	37, 119, 135, 148, 299, 368, 707, 906, 1092
SsiI	CCGC	3 cut(s)	479, 494, 1116
SspI	AATATT	1 cut(s)	789
SspMI	CTAG	2 cut(s)	1043, 1126
StyI	CCWWGG	1 cut(s)	211
TaaI	ACNGT	4 cut(s)	9, 186, 520, 1027
TaiI	ACGT	1 cut(s)	901
TaqI	TCGA	4 cut(s)	67, 125, 198, 987
TaqII	GACCGA	1 cut(s)	1005
TasI	AATT	9 cut(s)	37, 119, 135, 148, 299, 368, 707, 906, 1092
TfiI	GAWTC	6 cut(s)	176, 200, 289, 313, 485, 572
Tru1I	TTAA	6 cut(s)	72, 111, 402, 711, 771, 1095
Tru9I	TTAA	6 cut(s)	72, 111, 402, 711, 771, 1095
TscAI	CASTG	2 cut(s)	398, 414
TseI	GCWGC	4 cut(s)	257, 853, 929, 944
TspDTI	ATGAA	1 cut(s)	644
TspRI	CASTG	2 cut(s)	398, 414
Van91I	CCANNNNNTGG	1 cut(s)	902
VpaK11BI	GGWCC	4 cut(s)	182, 206, 248, 675
XapI	RAATTY	5 cut(s)	37, 119, 299, 368, 707
XceI	RCATGY	1 cut(s)	432
XcmI	CCANNNNNNNNNTGG	2 cut(s)	176, 349
XspI	CTAG	2 cut(s)	1043, 1126

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.