Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0005979

Physical Location & Seq

Genomic Coordinates Reverse (-)

26327739 .. 26331701

Gene Structure 3963 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1183100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1152 bp

ATGGTATCAGCTAAGTTAATGAAGCTTGTGTCACCTTGCTGGAAACCTTCTGTCGAGGGTGAAAATTCTAGTAGGGGGGACGTGATTGGACGAATTGATGGTTTGTTGTGGCATAAAGATTCAGGACATCATGTTAATGGAGATTTCTCAATGGCAGTAATTCAAGCAAACAACTTGTTGGAAGACCATAGCCAACTAGAATCAGGGCCTTTGAGCTCACTCGAATCGGGTCCTCATGGAACATTTGTTGGAATTTATGATGGACACGGAGGTCCAGAAACAGCCCGGTTTTTAAATGAACGTCTGTTCAATAACATCAAGAAGTTCACATCAGAGAATCAGGGCATGTCAGCTGATGTTATAACGAAAGCATTTTTGGCGACTGAAGAGGAGTTCCTCTCTCTAGTAAAGAAGCAGTGGACAATCAAGCCACTGCTTGCGTCTGTTGGTGCATGTTGTTTGGTAGGCATAGTATGTAGTGGGCTACTATACATAGCAAATGCAGGGGATTCTCGTGTGGTGCTAGGAAAACTGGAAAAGACTGTTAAACAGGTAAAAGCGGTTCAGTTATCAATTGAGCACAATGCAAGTTATGAATCTGTGAGAGAGGAGTTGCGCTCGTTGCATCCCGATGATCCACAGATTGTGTTATTAAAGCACAAGGTGTGGCGCGTGAAGGGTTTGATACAGATTTCAAGATCCATCGGTGATGCCTACCTAAAGAGGCAAGAATTTAACAAAGAACCTCTATTGCCAAAGTTCAGATTATCACAACCCTTCAACAAGCCGATCCTTAAAGCTGAGCCAACAGTATTAGTCCAAAAACTCTACCCCGAAGATCAGTTTCTTATATTTGCATCAGACGGCCTATGGGAGCAGTTAAGCAATCAGGAGGCAGTTGACATTGTCCAGAGCTATCCACGCAATGGTAGCGCAAGGAAACTTGTCAAAGCTGCACTTCGCGAAGCAGCGAAGAAGAGAGAAATGAGATATTCGGACTTAAAAAAGATAGACCGAGGGGTGAGGAGACATTTTCACGACGACATCACAGTGGTAGTTCTGTTCCTAGATTCGCATCTGGTCAGTCGTAGCTACTGTGACGGGCCTCTGCTATCGGTTAAGGCAGCTGGTGGTGTCCCTGCCAGCACCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002831 GO:0002832 GO:0005575 GO:0005623 GO:0005886 GO:0008150 GO:0016020 GO:0031347 GO:0031348 GO:0032101 GO:0032102 GO:0043900 GO:0043901 GO:0044464 GO:0048519 GO:0048583 GO:0048585 GO:0050789 GO:0065007 GO:0071944 GO:0080134 GO:1900424 GO:1900425

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GST_C_2 PP2C

Protein Analysis

384

Amino Acids

42.56

Weight (kDa)

8.9

Isoelectric Point (pI)

42.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PP2C	PF00481	71 - 324	9e-36	Protein phosphatase 2C

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005979)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12620 AT3G12620 AT3G55050 AT3G55050
fragaria_vesca	FvH4_7g20640 FvH4_7g20640 FvH4_7g20640
malus_domestica	MD01G1115100.v1.1 MD07G1183100.v1.1
prunus_persica	Prupe.2G221800_v2.0.a1 Prupe.2G221800_v2.0.a1 Prupe.2G221800_v2.0.a1 Prupe.2G221800_v2.0.a1
pyrus_communis	pycom01g14400 pycom07g17570
rosa_chinensis	RchiOBHm_Chr1g0364671
rosa_laevigata	RLG00000027468
rosa_multiflora	Rmu_sc0024218.1_g000002
rosa_roxburghii	Rroxscaffold_4G00291760 Rroxscaffold_4G00292180
rosa_rugosa	Rorug01G0317500 Rorug01G0317600
rosa_samantha	Rh1AG326600 Rh1BG287800 Rh1CG304600 Rh1DG319500
rosa_wichuraiana	Rw1G028930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	362
AasI	GACNNNNNNGTC	1 cut(s)	270
AccB7I	CCANNNNNTGG	1 cut(s)	926
AccII	CGCG	2 cut(s)	672, 963
AciI	CCGC	1 cut(s)	560
AclWI	GGATC	3 cut(s)	629, 693, 784
AcsI	RAATTY	3 cut(s)	64, 252, 731
AcuI	CTGAAG	1 cut(s)	405
AdeI	CACNNNGTG	1 cut(s)	664
AfiI	CCNNNNNNNGG	1 cut(s)	926
AgsI	TTSAA	4 cut(s)	164, 310, 696, 781
AjiI	CACGTC	1 cut(s)	82
AjuI	GAANNNNNNNTTGG	2 cut(s)	359, 391
AluBI	AGCT	9 cut(s)	11, 25, 216, 353, 800, 915, 953, 1092, 1127
AluI	AGCT	9 cut(s)	11, 25, 216, 353, 800, 915, 953, 1092, 1127
Alw21I	GWGCWC	2 cut(s)	218, 582
Alw26I	GTCTC	1 cut(s)	1021
AlwI	GGATC	3 cut(s)	629, 693, 784
AoxI	GGCC	3 cut(s)	206, 865, 1103
ApeKI	GCWGC	3 cut(s)	953, 968, 1124
ApoI	RAATTY	3 cut(s)	64, 252, 731
AspLEI	GCGC	3 cut(s)	618, 672, 935
AspS9I	GGNCC	4 cut(s)	206, 230, 272, 1103
AsuC2I	CCSGG	1 cut(s)	286
AsuHPI	GGTGA	4 cut(s)	24, 71, 719, 1033
AvaII	GGWCC	2 cut(s)	230, 272
BanII	GRGCYC	1 cut(s)	218
BauI	CACGAG	1 cut(s)	513
BbsI	GAAGAC	1 cut(s)	189
Bbv12I	GWGCWC	2 cut(s)	218, 582
BbvI	GCAGC	3 cut(s)	940, 980, 1136
BccI	CCATC	3 cut(s)	92, 254, 710
BceAI	ACGGC	1 cut(s)	880
BcnI	CCSGG	1 cut(s)	286
BcoDI	GTCTC	1 cut(s)	1021
BfaI	CTAG	6 cut(s)	69, 197, 404, 524, 1067, 1150
BisI	GCNGC	3 cut(s)	954, 969, 1125
BlpI	GCTNAGC	1 cut(s)	801
BlsI	GCNGC	3 cut(s)	955, 970, 1126
Bme1390I	CCNGG	1 cut(s)	286
Bme18I	GGWCC	2 cut(s)	230, 272
BmgBI	CACGTC	1 cut(s)	82
BmgT120I	GGNCC	4 cut(s)	206, 230, 272, 1103
BmiI	GGNNCC	1 cut(s)	231
BmrFI	CCNGG	1 cut(s)	286
BmsI	GCATC	4 cut(s)	634, 700, 866, 1084
BpiI	GAAGAC	1 cut(s)	189
BplI	GAGNNNNNCTC	4 cut(s)	383, 415, 602, 634
Bpu1102I	GCTNAGC	1 cut(s)	801
BpuMI	CCSGG	1 cut(s)	286
BsaBI	GATNNNNATC	1 cut(s)	1074
BsaJI	CCNNGG	1 cut(s)	1015
Bsc4I	CCNNNNNNNGG	1 cut(s)	926
Bse1I	ACTGG	1 cut(s)	537
Bse3DI	GCAATG	1 cut(s)	931
Bse8I	GATNNNNATC	1 cut(s)	1074
BseDI	CCNNGG	1 cut(s)	1015
BseGI	GGATG	1 cut(s)	625
BseJI	GATNNNNATC	1 cut(s)	1074
BseLI	CCNNNNNNNGG	1 cut(s)	926
BseMI	GCAATG	1 cut(s)	931
BseMII	CTCAG	1 cut(s)	792
BseNI	ACTGG	1 cut(s)	537
BseRI	GAGGAG	3 cut(s)	404, 623, 1039
BseXI	GCAGC	3 cut(s)	940, 980, 1136
BsgI	GTGCAG	1 cut(s)	939
Bsh1236I	CGCG	2 cut(s)	672, 963
BshFI	GGCC	3 cut(s)	208, 867, 1105
BsiHKAI	GWGCWC	2 cut(s)	218, 582
BsiSI	CCGG	1 cut(s)	286
BslFI	GGGAC	2 cut(s)	92, 1121
BslI	CCNNNNNNNGG	1 cut(s)	926
BsmAI	GTCTC	1 cut(s)	1021
BsmFI	GGGAC	2 cut(s)	92, 1121
BsnI	GGCC	3 cut(s)	208, 867, 1105
Bsp1286I	GDGCHC	2 cut(s)	218, 582
Bsp143I	GATC	4 cut(s)	634, 698, 789, 838
Bsp1720I	GCTNAGC	1 cut(s)	801
Bsp68I	TCGCGA	1 cut(s)	963
BspACI	CCGC	1 cut(s)	560
BspANI	GGCC	3 cut(s)	208, 867, 1105
BspCNI	CTCAG	1 cut(s)	793
BspFNI	CGCG	2 cut(s)	672, 963
BspLI	GGNNCC	1 cut(s)	231
BspPI	GGATC	3 cut(s)	629, 693, 784
BsrDI	GCAATG	1 cut(s)	931
BsrI	ACTGG	1 cut(s)	537
BssECI	CCNNGG	1 cut(s)	1015
BssMI	GATC	4 cut(s)	634, 698, 789, 838
BssSI	CACGAG	1 cut(s)	513
Bst2BI	CACGAG	1 cut(s)	513
Bst4CI	ACNGT	4 cut(s)	544, 811, 1051, 1097
Bst6I	CTCTTC	2 cut(s)	381, 971
BstC8I	GCNNGC	2 cut(s)	438, 1144
BstDEI	CTNAG	2 cut(s)	12, 801
BstF5I	GGATG	1 cut(s)	625
BstFNI	CGCG	2 cut(s)	672, 963
BstHHI	GCGC	3 cut(s)	618, 672, 935
BstKTI	GATC	4 cut(s)	637, 701, 792, 841
BstMAI	GTCTC	1 cut(s)	1021
BstMBI	GATC	4 cut(s)	634, 698, 789, 838
BstMWI	GCNNNNNNNGC	4 cut(s)	377, 622, 921, 930
BstNSI	RCATGY	2 cut(s)	349, 456
BstSCI	CCNGG	1 cut(s)	284
BstUI	CGCG	2 cut(s)	672, 963
BstV1I	GCAGC	3 cut(s)	940, 980, 1136
BstV2I	GAAGAC	1 cut(s)	189
BstX2I	RGATCY	1 cut(s)	698
BstYI	RGATCY	1 cut(s)	698
BsuRI	GGCC	3 cut(s)	208, 867, 1105
BtrI	CACGTC	1 cut(s)	82
BtsCI	GGATG	1 cut(s)	625
BtsI	GCAGTG	2 cut(s)	422, 431
BtsIMutI	CAGTG	3 cut(s)	422, 431, 1056
BtuMI	TCGCGA	1 cut(s)	963
Cac8I	GCNNGC	2 cut(s)	438, 1144
CfoI	GCGC	3 cut(s)	618, 672, 935
Cfr13I	GGNCC	4 cut(s)	206, 230, 272, 1103
CseI	GACGC	1 cut(s)	429
CviAII	CATG	4 cut(s)	131, 236, 346, 453
DdeI	CTNAG	2 cut(s)	12, 801
DpnI	GATC	4 cut(s)	636, 700, 791, 840
DpnII	GATC	4 cut(s)	634, 698, 789, 838
DraI	TTTAAA	1 cut(s)	294
DraIII	CACNNNGTG	1 cut(s)	664
DrdI	GACNNNNNNGTC	1 cut(s)	270
DseDI	GACNNNNNNGTC	1 cut(s)	270
Eam1104I	CTCTTC	2 cut(s)	381, 971
EarI	CTCTTC	2 cut(s)	381, 971
Ecl136II	GAGCTC	1 cut(s)	216
Eco24I	GRGCYC	1 cut(s)	218
Eco47I	GGWCC	2 cut(s)	230, 272
Eco53kI	GAGCTC	1 cut(s)	216
Eco57I	CTGAAG	1 cut(s)	405
EcoICRI	GAGCTC	1 cut(s)	216
EcoO109I	RGGNCCY	2 cut(s)	206, 230
EcoT38I	GRGCYC	1 cut(s)	218
FaeI	CATG	4 cut(s)	134, 239, 349, 456
FalI	AAGNNNNNCTT	2 cut(s)	942, 974
FaqI	GGGAC	2 cut(s)	92, 1121
FatI	CATG	4 cut(s)	130, 235, 345, 452
Fnu4HI	GCNGC	3 cut(s)	954, 969, 1125
FokI	GGATG	1 cut(s)	612
FriOI	GRGCYC	1 cut(s)	218
Fsp4HI	GCNGC	3 cut(s)	954, 969, 1125
FspBI	CTAG	6 cut(s)	69, 197, 404, 524, 1067, 1150
GlaI	GCGC	3 cut(s)	617, 671, 934
GluI	GCNGC	3 cut(s)	954, 969, 1125
HaeIII	GGCC	3 cut(s)	208, 867, 1105
HapII	CCGG	1 cut(s)	286
HgaI	GACGC	1 cut(s)	429
HhaI	GCGC	3 cut(s)	618, 672, 935
Hin1II	CATG	4 cut(s)	134, 239, 349, 456
Hin6I	GCGC	3 cut(s)	616, 670, 933
HinP1I	GCGC	3 cut(s)	616, 670, 933
HincII	GTYRAC	1 cut(s)	901
HindII	GTYRAC	1 cut(s)	901
HindIII	AAGCTT	1 cut(s)	23
HinfI	GANTC	7 cut(s)	119, 200, 224, 337, 509, 596, 1070
HpaII	CCGG	1 cut(s)	286
HphI	GGTGA	4 cut(s)	24, 71, 719, 1033
Hpy166II	GTNNAC	3 cut(s)	327, 420, 901
Hpy188I	TCNGA	4 cut(s)	334, 764, 862, 997
Hpy188III	TCNNGA	9 cut(s)	123, 275, 319, 629, 696, 890, 910, 962, 1037
Hpy8I	GTNNAC	3 cut(s)	327, 420, 901
Hpy99I	CGWCG	1 cut(s)	1043
HpyAV	CCTTC	3 cut(s)	57, 670, 787
HpyCH4III	ACNGT	4 cut(s)	544, 811, 1051, 1097
HpyCH4IV	ACGT	2 cut(s)	81, 301
HpyCH4V	TGCA	6 cut(s)	452, 503, 587, 625, 857, 956
HpyF10VI	GCNNNNNNNGC	4 cut(s)	377, 622, 921, 930
HpyF3I	CTNAG	2 cut(s)	12, 801
HpySE526I	ACGT	2 cut(s)	81, 301
Hsp92II	CATG	4 cut(s)	134, 239, 349, 456
HspAI	GCGC	3 cut(s)	616, 670, 933
Kzo9I	GATC	4 cut(s)	634, 698, 789, 838
LmnI	GCTCC	1 cut(s)	874
Lsp1109I	GCAGC	3 cut(s)	940, 980, 1136
LweI	GCATC	4 cut(s)	634, 700, 866, 1084
MaeI	CTAG	6 cut(s)	69, 197, 404, 524, 1067, 1150
MaeII	ACGT	2 cut(s)	81, 301
MaeIII	GTNAC	2 cut(s)	30, 1097
MalI	GATC	4 cut(s)	636, 700, 791, 840
MboI	GATC	4 cut(s)	634, 698, 789, 838
MboII	GAAGA	5 cut(s)	194, 398, 848, 985, 988
MfeI	CAATTG	1 cut(s)	573
MflI	RGATCY	1 cut(s)	698
MhlI	GDGCHC	2 cut(s)	218, 582
MluCI	AATT	6 cut(s)	64, 93, 159, 252, 573, 731
MmeI	TCCRAC	2 cut(s)	159, 229
MslI	CAYNNNNRTG	3 cut(s)	135, 630, 1049
MspA1I	CMGCKG	2 cut(s)	353, 1127
MspI	CCGG	1 cut(s)	286
MspR9I	CCNGG	1 cut(s)	286
MunI	CAATTG	1 cut(s)	573
MvnI	CGCG	2 cut(s)	672, 963
MwoI	GCNNNNNNNGC	4 cut(s)	377, 622, 921, 930
NciI	CCSGG	1 cut(s)	286
NdeII	GATC	4 cut(s)	634, 698, 789, 838
NlaIII	CATG	4 cut(s)	134, 239, 349, 456
NlaIV	GGNNCC	1 cut(s)	231
NmuCI	GTSAC	2 cut(s)	30, 1097
NruI	TCGCGA	1 cut(s)	963
NspI	RCATGY	2 cut(s)	349, 456
PfeI	GAWTC	7 cut(s)	119, 200, 224, 337, 509, 596, 1070
PflFI	GACNNNGTC	1 cut(s)	905
PflMI	CCANNNNNTGG	1 cut(s)	926
PkrI	GCNGC	3 cut(s)	955, 970, 1126
PpuMI	RGGWCCY	1 cut(s)	230
PsiI	TTATAA	1 cut(s)	362
Psp124BI	GAGCTC	1 cut(s)	218
Psp5II	RGGWCCY	1 cut(s)	230
PspN4I	GGNNCC	1 cut(s)	231
PspPI	GGNCC	4 cut(s)	206, 230, 272, 1103
PspPPI	RGGWCCY	1 cut(s)	230
PsrI	GAACNNNNNNTAC	2 cut(s)	546, 578
PsuI	RGATCY	1 cut(s)	698
PsyI	GACNNNGTC	1 cut(s)	905
PvuII	CAGCTG	2 cut(s)	353, 1127
RruI	TCGCGA	1 cut(s)	963
RseI	CAYNNNNRTG	3 cut(s)	135, 630, 1049
SacI	GAGCTC	1 cut(s)	218
SatI	GCNGC	3 cut(s)	954, 969, 1125
Sau3AI	GATC	4 cut(s)	634, 698, 789, 838
Sau96I	GGNCC	4 cut(s)	206, 230, 272, 1103
ScrFI	CCNGG	1 cut(s)	286
SduI	GDGCHC	2 cut(s)	218, 582
SfaNI	GCATC	4 cut(s)	634, 700, 866, 1084
SinI	GGWCC	2 cut(s)	230, 272
SmiMI	CAYNNNNRTG	3 cut(s)	135, 630, 1049
Sse9I	AATT	6 cut(s)	64, 93, 159, 252, 573, 731
SsiI	CCGC	1 cut(s)	560
SspMI	CTAG	6 cut(s)	69, 197, 404, 524, 1067, 1150
SstI	GAGCTC	1 cut(s)	218
StyD4I	CCNGG	1 cut(s)	284
TaaI	ACNGT	4 cut(s)	544, 811, 1051, 1097
TaiI	ACGT	2 cut(s)	84, 304
TaqI	TCGA	2 cut(s)	54, 222
TaqII	GACCGA	1 cut(s)	1029
TasI	AATT	6 cut(s)	64, 93, 159, 252, 573, 731
TfiI	GAWTC	7 cut(s)	119, 200, 224, 337, 509, 596, 1070
TscAI	CASTG	3 cut(s)	422, 438, 1056
TseFI	GTSAC	2 cut(s)	30, 1097
TseI	GCWGC	3 cut(s)	953, 968, 1124
Tsp45I	GTSAC	2 cut(s)	30, 1097
TspDTI	ATGAA	3 cut(s)	35, 312, 609
TspGWI	ACGGA	1 cut(s)	282
TspRI	CASTG	3 cut(s)	422, 438, 1056
Tth111I	GACNNNGTC	1 cut(s)	905
Van91I	CCANNNNNTGG	1 cut(s)	926
VpaK11BI	GGWCC	2 cut(s)	230, 272
XapI	RAATTY	3 cut(s)	64, 252, 731
XceI	RCATGY	2 cut(s)	349, 456
XspI	CTAG	6 cut(s)	69, 197, 404, 524, 1067, 1150

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.