Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0011932

Physical Location & Seq

Genomic Coordinates Forward (+)

17409134 .. 17411815

Gene Structure 2682 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g21891.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2646 bp

ATGATCATGAAACAAGCAGCTCCCAAGAATTATCAACACTACATTGGCCTATTTTCTTCATGCAAAGATTTAAAATCCCTACTTCAAATCCATGCCAAACTAGTAGTCTCAGGTCTCCAACAACACCCTTCAACACTAACCCATCTCATAAATTCCTACTCTTCCTTCCAAAGATGTAACCTTTCGCGCTTAGTTTTCAATTCTGTACAAAAACCAAGTGTTAGATTATGGAACAACATGATCAGAGCTCATACAAGAGCACAAGAATTCAAAGAAGCCCAAGAAATGTACCATTCTTTGTTGAAGCATGGTGTAGAGCCAGACAAGTACACCTTCAACTTTGCCCTGAAAGCTTGCACTGCTGCATTGGATTTTGAAGCGGGTGTATTGGTGCACCTTGAAGTAGAGCGTAGAGGATTGGAGAGTGATGTGTTTATTGGGACTAGTTTGATTGATATGTATTGTAAAATGGGGGAGGTGAAATGTGCAGTAGAGGTGTTTGATAGAATGCCTGAGAAGGATGTTGTGGCATGTAATGCTTTGATTTCCGGGTTGTCGAAAAGCGAGGATCCTAATGAAGCGTTGGAGTTTTTTAAGAGGACGCAATGTTGGGGGATGGGGGTGAGTTTAGTGAGCTTGTTTAGTTTGGTTCCAGCAGTGTCTAGATTGGCGGATATTGATTCGTGTAGGTGTATTCATGGGTTTGTGGTGAGGAGGGAGTTGAGTTTCGAGGTTTTGAATGGGTTGGTTGATATGTATTCCAAGTGTGGGGATGTGGATGTTGCTCGGAGGGTTTTTGATATGATGCAGGGTGGCGATGAGGATGGTGTTTTATGGGGGATAATGATGGCAGGGTACGCGAGTAATGGATGTTTTGTTGAAATTTTGGAGCTGTTTGATTGCTTGAAAGGGGATGGCGGTAAAATGAATAAGGTTTGCATTATGAGTGTGCTTTTGGCTGCTACTGAGCTGAAAGATTTGGAGATGGGGAGAGAGATTCATTGTTGTGCTTTAGAACTAGAAGTCGATTCTGATGTCGCGGTTGCTACTTCTATAATGACCATGTATGCAAAATGTGGAGAAATAGAGAAGGCAATACAATTGTTTGAGGGACTTGGGGAAAGAGATTTAGTTTCTTGGTCTGCACTTATATCTGCTTGTGTCCAGTCTGGCTATCCTGAAGTGGCATTGTCTCTCTTTCGGGATAGGCAGAATGAAAATCTCAAACCATGTGGTGTGACATTGGTCAGCGTCCTTGCTGCATGTGGGGAGCTTTCATATCTGAATATTGGTAAGAGCATACATTGCTATGCTGTTAAGGCCGATTTGGATTCTGATATTTCTACTGGGACAGCCCTGGTCTCCATGTATGCTAAATGTGGATTGTCTACTACTGCCTTGATTATATTCAACAGAATGCCATCTAAAGATGTTGTGACATGGAATGCACTTATAAATGCATATACCCAATTAGGTGATGTCTACCATGCTATTGATATGTTGAATGAATTGTGGTTATCTGGAGTAAAACCTGATGCAGGAACGATGGCGGGTATGGTCTCCACTTGTAGCTTATTAAATGATCTAAATCACGGTACTTGTATTCATGGACGAATTATAAAGAACGGGTTTGAACATGATGCTCCTTTGAGAAATGCTCTTATTGGCATGTATTGCAAATGTGGTGACATTTCATCGGCTGAATTTCTGTTTCATAAAATGAAACTAATGAAAGATGTGGTGTCCTGGAATGTAATGATTTCAGGATACATGGAGGGTGGATATGCCACAGAAGCTATATCTGTGTTTCACCAGATGAAACTACACAATTGTCAGCCGAATTTAGTCACGTTTGTAAGCATCCTTCCTGCAGTGGCAACTCTGGCAGCAATAAGAGAGGGCATGGCTTTTCATGCCTGCATTATCCAGAAGGGGTTTCTGTCTAATACACTTGTCAGAAATAGTCTTATTGACATGTATGCTAAATGTGGACAGCTCAATGATTCGGAACAGTGCTTTGAAGAGATGGAACTCAGGGATAAAGTTTCGTGGAACGCAATGCTTGCAGCATATGCAATGCATGGGCAAGGGGATCATGCTATTGCACTTTACTCGCTGATGGAGAAGAGCTGTATCCAACTTGATTCTGTGTCATTCATTAATGTCTTGTCTGCCTGCAGACATGCGGGTTTAATAAAAGAAGGGAAGGAAGTTTTTCACGTTATGCGTGAAAAGCACCATCTTGGACCAGAGTTGGAACATTATGCGTGCATGGTAGATCTTTATGGCCGTGCTGGTTTCTTCGATGAAGCTCTAGAATTGATTAATACAATGCCAATGGAGCCTGATGCTGGAGTCTGGGGAGCATTATTAGGTGCATGCAGGATGCATTCAAATGCGAAGTTGGGAGAAGTTGCGTTGAGTCATCTTGTTAACCTTGAACCTACAAATGCCAGTAATTACATAACTTTAGCGGATATACATGCATATTCAGCTAGATGGAGTGATGCTTGCAAGACAAGATCAAATATGAAGAGCTCTGGGTCAATGAAAACGCCAGGATGTAGTTGGGTAGAGGTCCAAAACAGGGTTCATACGCTTCAGGCGGGTGATTACAACTACCCCCAACTTGGAGCTGAGAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

882

Amino Acids

97.34

Weight (kDa)

5.76

Isoelectric Point (pI)

39.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	72 - 119	8.1e-10	PPR repeat family
PPR_1	PF12854	138 - 170	2.1e-07	PPR repeat
PPR_2	PF13041	476 - 523	3.3e-08	PPR repeat family
PPR_2	PF13041	578 - 624	6.7e-12	PPR repeat family
PPR	PF01535	581 - 611	2.5e-06	PPR repeat
PPR_2	PF13041	680 - 726	4.3e-07	PPR repeat family
E_motif	PF20431	797 - 859	1.6e-18	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011932)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39620 AT2G40720
fragaria_vesca	FvH4_7g21891
malus_domestica	MD07G1193300.v1.1
prunus_persica	Prupe.2G231000_v2.0.a1
pyrus_communis	pycom07g18250
rosa_chinensis	RchiOBHm_Chr1g0366141
rosa_laevigata	RLG00000027363
rosa_multiflora	Rmu_co8484073.1_g000001 Rmu_sc0003987.1_g000001
rosa_roxburghii	Rroxscaffold_4G00290450 Rroxscaffold_4G00290460
rosa_rugosa	Rorug01G0327800 Rorug01G0327900
rosa_samantha	Rh1AG335900 Rh1BG297300 Rh1CG313300 Rh1DG329100
rosa_wichuraiana	Rw1G029800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1454, 1619
AccI	GTMKAC	2 cut(s)	1388, 1482
AccII	CGCG	3 cut(s)	187, 860, 1040
AciI	CCGC	8 cut(s)	380, 671, 918, 1040, 1550, 2186, 2474, 2606
AclWI	GGATC	3 cut(s)	563, 576, 2100
AcoI	YGGCCR	1 cut(s)	2287
AcsI	RAATTY	5 cut(s)	151, 266, 882, 1703, 1840
AcuI	CTGAAG	2 cut(s)	1200, 2585
AfaI	GTAC	5 cut(s)	207, 290, 329, 857, 1597
AfiI	CCNNNNNNNGG	5 cut(s)	768, 1538, 2351, 2587, 2630
AflIII	ACRYGT	1 cut(s)	1974
AhlI	ACTAGT	2 cut(s)	100, 443
AjnI	CCWGG	3 cut(s)	1356, 1745, 2557
AjuI	GAANNNNNNNTTGG	2 cut(s)	2574, 2606
Alw21I	GWGCWC	4 cut(s)	250, 262, 396, 2540
Alw26I	GTCTC	5 cut(s)	112, 119, 1197, 1366, 1564
Alw44I	GTGCAC	1 cut(s)	392
AlwI	GGATC	3 cut(s)	563, 576, 2100
AoxI	GGCC	3 cut(s)	46, 1320, 2287
ApaLI	GTGCAC	1 cut(s)	392
ApeKI	GCWGC	6 cut(s)	17, 362, 959, 1259, 1886, 2066
ApoI	RAATTY	5 cut(s)	151, 266, 882, 1703, 1840
ArsI	GACNNNNNNTTYG	2 cut(s)	90, 122
AseI	ATTAAT	2 cut(s)	2160, 2325
Asp700I	GAANNNNTTC	1 cut(s)	2214
AspLEI	GCGC	1 cut(s)	189
AspS9I	GGNCC	2 cut(s)	2246, 2578
AsuC2I	CCSGG	1 cut(s)	550
AsuHPI	GGTGA	7 cut(s)	490, 634, 721, 1487, 1697, 1802, 2621
AvaII	GGWCC	2 cut(s)	2246, 2578
BaeGI	GKGCMC	1 cut(s)	396
BaeI	ACNNNNGTAYC	2 cut(s)	847, 880
BamHI	GGATCC	1 cut(s)	568
BanII	GRGCYC	2 cut(s)	250, 2540
BarI	GAAGNNNNNNTAC	2 cut(s)	1848, 1880
Bbv12I	GWGCWC	4 cut(s)	250, 262, 396, 2540
BbvI	GCAGC	6 cut(s)	29, 349, 946, 1246, 1898, 2078
BceAI	ACGGC	1 cut(s)	2274
BcgI	CGANNNNNNTGC	2 cut(s)	2094, 2128
BciT130I	CCWGG	3 cut(s)	1358, 1747, 2559
BciVI	GTATCC	2 cut(s)	1760, 2144
BclI	TGATCA	2 cut(s)	3, 240
BcnI	CCSGG	1 cut(s)	550
BcoDI	GTCTC	5 cut(s)	112, 119, 1197, 1366, 1564
BcuI	ACTAGT	2 cut(s)	100, 443
BfaI	CTAG	6 cut(s)	101, 444, 663, 1019, 2315, 2496
BfmI	CTRYAG	2 cut(s)	1869, 2176
BfuI	GTATCC	2 cut(s)	1760, 2144
BglII	AGATCT	1 cut(s)	2278
BisI	GCNGC	6 cut(s)	18, 363, 960, 1260, 1887, 2067
BlsI	GCNGC	6 cut(s)	19, 364, 961, 1261, 1888, 2068
Bme1390I	CCNGG	4 cut(s)	550, 1358, 1747, 2559
Bme18I	GGWCC	2 cut(s)	2246, 2578
BmgT120I	GGNCC	2 cut(s)	2246, 2578
BmiI	GGNNCC	3 cut(s)	570, 651, 2343
BmrFI	CCNGG	4 cut(s)	550, 1358, 1747, 2559
BmrI	ACTGGG	1 cut(s)	1356
BmsI	GCATC	7 cut(s)	795, 1525, 1630, 1869, 2338, 2376, 2497
BmuI	ACTGGG	1 cut(s)	1356
BoxI	GACNNNNGTC	1 cut(s)	1244
BplI	GAGNNNNNCTC	2 cut(s)	1642, 1674
BpmI	CTGGAG	2 cut(s)	1542, 2373
BpuMI	CCSGG	1 cut(s)	550
BsaBI	GATNNNNATC	1 cut(s)	1587
BsaI	GGTCTC	3 cut(s)	119, 1366, 1564
BsaJI	CCNNGG	1 cut(s)	1356
Bsc4I	CCNNNNNNNGG	5 cut(s)	768, 1538, 2351, 2587, 2630
Bse1I	ACTGG	3 cut(s)	1165, 1351, 2454
Bse3DI	GCAATG	4 cut(s)	611, 1303, 2064, 2082
Bse8I	GATNNNNATC	1 cut(s)	1587
BseBI	CCWGG	3 cut(s)	1358, 1747, 2559
BseDI	CCNNGG	1 cut(s)	1356
BseJI	GATNNNNATC	1 cut(s)	1587
BseLI	CCNNNNNNNGG	5 cut(s)	768, 1538, 2351, 2587, 2630
BseMI	GCAATG	4 cut(s)	611, 1303, 2064, 2082
BseMII	CTCAG	5 cut(s)	123, 504, 957, 2047, 2628
BseNI	ACTGG	3 cut(s)	1165, 1351, 2454
BseRI	GAGGAG	1 cut(s)	727
BseSI	GKGCMC	1 cut(s)	396
BseXI	GCAGC	6 cut(s)	29, 349, 946, 1246, 1898, 2078
BsgI	GTGCAG	2 cut(s)	507, 1128
Bsh1236I	CGCG	3 cut(s)	187, 860, 1040
BshFI	GGCC	3 cut(s)	48, 1322, 2289
BsiHKAI	GWGCWC	4 cut(s)	250, 262, 396, 2540
BsiSI	CCGG	1 cut(s)	549
BslFI	GGGAC	3 cut(s)	454, 1125, 1363
BslI	CCNNNNNNNGG	5 cut(s)	768, 1538, 2351, 2587, 2630
BsmAI	GTCTC	5 cut(s)	112, 119, 1197, 1366, 1564
BsmFI	GGGAC	3 cut(s)	454, 1125, 1363
BsmI	GAATGC	4 cut(s)	513, 1422, 1450, 2389
BsnI	GGCC	3 cut(s)	48, 1322, 2289
Bso31I	GGTCTC	3 cut(s)	119, 1366, 1564
Bsp1286I	GDGCHC	4 cut(s)	250, 262, 396, 2540
Bsp1407I	TGTACA	1 cut(s)	205
Bsp143I	GATC	7 cut(s)	3, 240, 568, 1582, 2092, 2278, 2522
BspACI	CCGC	8 cut(s)	380, 671, 918, 1040, 1550, 2186, 2474, 2606
BspANI	GGCC	3 cut(s)	48, 1322, 2289
BspCNI	CTCAG	5 cut(s)	122, 505, 958, 2046, 2629
BspFNI	CGCG	3 cut(s)	187, 860, 1040
BspHI	TCATGA	1 cut(s)	6
BspLI	GGNNCC	3 cut(s)	570, 651, 2343
BspMAI	CTGCAG	2 cut(s)	1873, 2180
BspPI	GGATC	3 cut(s)	563, 576, 2100
BspQI	GCTCTTC	2 cut(s)	2120, 2528
BspTNI	GGTCTC	3 cut(s)	119, 1366, 1564
BsrDI	GCAATG	4 cut(s)	611, 1303, 2064, 2082
BsrGI	TGTACA	1 cut(s)	205
BsrI	ACTGG	3 cut(s)	1165, 1351, 2454
BssECI	CCNNGG	1 cut(s)	1356
BssMI	GATC	7 cut(s)	3, 240, 568, 1582, 2092, 2278, 2522
Bst2UI	CCWGG	3 cut(s)	1358, 1747, 2559
Bst4CI	ACNGT	2 cut(s)	1595, 2013
Bst6I	CTCTTC	4 cut(s)	166, 2016, 2120, 2528
BstAPI	GCANNNNNTGC	5 cut(s)	536, 1305, 1674, 2063, 2072
BstAUI	TGTACA	1 cut(s)	205
BstC8I	GCNNGC	7 cut(s)	355, 1918, 2064, 2176, 2269, 2380, 2512
BstDEI	CTNAG	6 cut(s)	109, 190, 513, 966, 2033, 2637
BstENI	CCTNNNNNAGG	1 cut(s)	1536
BstFNI	CGCG	3 cut(s)	187, 860, 1040
BstHHI	GCGC	1 cut(s)	189
BstKTI	GATC	7 cut(s)	6, 243, 571, 1585, 2095, 2281, 2525
BstMAI	GTCTC	5 cut(s)	112, 119, 1197, 1366, 1564
BstMBI	GATC	7 cut(s)	3, 240, 568, 1582, 2092, 2278, 2522
BstNI	CCWGG	3 cut(s)	1358, 1747, 2559
BstNSI	RCATGY	7 cut(s)	534, 1266, 1672, 1978, 2186, 2382, 2486
BstPAI	GACNNNNGTC	1 cut(s)	1244
BstSCI	CCNGG	4 cut(s)	548, 1356, 1745, 2557
BstSFI	CTRYAG	2 cut(s)	1869, 2176
BstSLI	GKGCMC	1 cut(s)	396
BstUI	CGCG	3 cut(s)	187, 860, 1040
BstV1I	GCAGC	6 cut(s)	29, 349, 946, 1246, 1898, 2078
BstX2I	RGATCY	2 cut(s)	568, 2278
BstYI	RGATCY	2 cut(s)	568, 2278
BsuI	GTATCC	2 cut(s)	1760, 2144
BsuRI	GGCC	3 cut(s)	48, 1322, 2289
BtgZI	GCGATG	1 cut(s)	831
BtsI	GCAGTG	3 cut(s)	357, 663, 1878
BtsIMutI	CAGTG	4 cut(s)	357, 663, 1878, 2018
Cac8I	GCNNGC	7 cut(s)	355, 1918, 2064, 2176, 2269, 2380, 2512
CciI	TCATGA	1 cut(s)	6
CfoI	GCGC	1 cut(s)	189
Cfr13I	GGNCC	2 cut(s)	2246, 2578
CseI	GACGC	2 cut(s)	610, 1240
Csp6I	GTAC	5 cut(s)	206, 289, 328, 856, 1596
CspCI	CAANNNNNGTGG	2 cut(s)	1213, 1248
CviQI	GTAC	5 cut(s)	206, 289, 328, 856, 1596
DdeI	CTNAG	6 cut(s)	109, 190, 513, 966, 2033, 2637
DpnI	GATC	7 cut(s)	5, 242, 570, 1584, 2094, 2280, 2524
DpnII	GATC	7 cut(s)	3, 240, 568, 1582, 2092, 2278, 2522
DraI	TTTAAA	1 cut(s)	72
EaeI	YGGCCR	1 cut(s)	2287
Eam1104I	CTCTTC	4 cut(s)	166, 2016, 2120, 2528
EarI	CTCTTC	4 cut(s)	166, 2016, 2120, 2528
EciI	GGCGGA	1 cut(s)	686
Ecl136II	GAGCTC	2 cut(s)	248, 2538
Eco24I	GRGCYC	2 cut(s)	250, 2540
Eco31I	GGTCTC	3 cut(s)	119, 1366, 1564
Eco47I	GGWCC	2 cut(s)	2246, 2578
Eco53kI	GAGCTC	2 cut(s)	248, 2538
Eco57I	CTGAAG	2 cut(s)	1200, 2585
EcoICRI	GAGCTC	2 cut(s)	248, 2538
EcoNI	CCTNNNNNAGG	1 cut(s)	1536
EcoRI	GAATTC	1 cut(s)	266
EcoRII	CCWGG	3 cut(s)	1356, 1745, 2557
EcoT22I	ATGCAT	4 cut(s)	1462, 2082, 2391, 2488
EcoT38I	GRGCYC	2 cut(s)	250, 2540
FalI	AAGNNNNNCTT	2 cut(s)	317, 349
FaqI	GGGAC	3 cut(s)	454, 1125, 1363
FauI	CCCGC	4 cut(s)	373, 1543, 2179, 2599
FauNDI	CATATG	1 cut(s)	2071
FbaI	TGATCA	2 cut(s)	3, 240
FblI	GTMKAC	2 cut(s)	1388, 1482
Fnu4HI	GCNGC	6 cut(s)	18, 363, 960, 1260, 1887, 2067
FriOI	GRGCYC	2 cut(s)	250, 2540
Fsp4HI	GCNGC	6 cut(s)	18, 363, 960, 1260, 1887, 2067
FspBI	CTAG	6 cut(s)	101, 444, 663, 1019, 2315, 2496
GlaI	GCGC	1 cut(s)	188
GluI	GCNGC	6 cut(s)	18, 363, 960, 1260, 1887, 2067
GsuI	CTGGAG	2 cut(s)	1542, 2373
HaeIII	GGCC	3 cut(s)	48, 1322, 2289
HapII	CCGG	1 cut(s)	549
HgaI	GACGC	2 cut(s)	610, 1240
HhaI	GCGC	1 cut(s)	189
Hin6I	GCGC	1 cut(s)	187
HinP1I	GCGC	1 cut(s)	187
HincII	GTYRAC	1 cut(s)	2434
HindII	GTYRAC	1 cut(s)	2434
HindIII	AAGCTT	1 cut(s)	351
HinfI	GANTC	8 cut(s)	680, 997, 1028, 1331, 2003, 2144, 2355, 2422
HpaI	GTTAAC	1 cut(s)	2434
HpaII	CCGG	1 cut(s)	549
HphI	GGTGA	7 cut(s)	490, 634, 721, 1487, 1697, 1802, 2621
Hpy166II	GTNNAC	6 cut(s)	330, 394, 1389, 1483, 1991, 2434
Hpy188I	TCNGA	7 cut(s)	245, 789, 1033, 1284, 1336, 1958, 2008
Hpy188III	TCNNGA	8 cut(s)	7, 663, 1178, 1202, 1521, 1764, 1927, 2315
Hpy8I	GTNNAC	6 cut(s)	330, 394, 1389, 1483, 1991, 2434
HpyAV	CCTTC	9 cut(s)	138, 175, 343, 511, 1084, 1874, 1924, 2195, 2200
HpyCH4III	ACNGT	2 cut(s)	1595, 2013
HpyCH4IV	ACGT	2 cut(s)	1850, 2220
HpyF3I	CTNAG	6 cut(s)	109, 190, 513, 966, 2033, 2637
HpySE526I	ACGT	2 cut(s)	1850, 2220
HspAI	GCGC	1 cut(s)	187
Ksp22I	TGATCA	2 cut(s)	3, 240
KspAI	GTTAAC	1 cut(s)	2434
Kzo9I	GATC	7 cut(s)	3, 240, 568, 1582, 2092, 2278, 2522
LguI	GCTCTTC	2 cut(s)	2120, 2528
LmnI	GCTCC	7 cut(s)	25, 889, 1270, 1648, 2341, 2363, 2633
Lsp1109I	GCAGC	6 cut(s)	29, 349, 946, 1246, 1898, 2078
LweI	GCATC	7 cut(s)	795, 1525, 1630, 1869, 2338, 2376, 2497
MaeI	CTAG	6 cut(s)	101, 444, 663, 1019, 2315, 2496
MaeII	ACGT	2 cut(s)	1850, 2220
MaeIII	GTNAC	5 cut(s)	176, 1237, 1435, 1685, 1846
MalI	GATC	7 cut(s)	5, 242, 570, 1584, 2094, 2280, 2524
MboI	GATC	7 cut(s)	3, 240, 568, 1582, 2092, 2278, 2522
MboII	GAAGA	6 cut(s)	48, 153, 2033, 2137, 2293, 2545
MfeI	CAATTG	2 cut(s)	1100, 1828
MflI	RGATCY	2 cut(s)	568, 2278
MhlI	GDGCHC	4 cut(s)	250, 262, 396, 2540
MlyI	GAGTC	2 cut(s)	2364, 2431
MmeI	TCCRAC	4 cut(s)	142, 564, 2161, 2235
Mph1103I	ATGCAT	4 cut(s)	1462, 2082, 2391, 2488
MroXI	GAANNNNTTC	1 cut(s)	2214
MseI	TTAA	9 cut(s)	71, 594, 1317, 1577, 2160, 2192, 2325, 2433, 2644
MslI	CAYNNNNRTG	3 cut(s)	1005, 1308, 2394
MspI	CCGG	1 cut(s)	549
MspR9I	CCNGG	4 cut(s)	550, 1358, 1747, 2559
MunI	CAATTG	2 cut(s)	1100, 1828
Mva1269I	GAATGC	4 cut(s)	513, 1422, 1450, 2389
MvaI	CCWGG	3 cut(s)	1358, 1747, 2559
MvnI	CGCG	3 cut(s)	187, 860, 1040
NciI	CCSGG	1 cut(s)	550
NdeI	CATATG	1 cut(s)	2071
NdeII	GATC	7 cut(s)	3, 240, 568, 1582, 2092, 2278, 2522
NlaIV	GGNNCC	3 cut(s)	570, 651, 2343
NmuCI	GTSAC	4 cut(s)	1237, 1435, 1685, 1846
NsiI	ATGCAT	4 cut(s)	1462, 2082, 2391, 2488
NspI	RCATGY	7 cut(s)	534, 1266, 1672, 1978, 2186, 2382, 2486
PaeI	GCATGC	1 cut(s)	2382
PagI	TCATGA	1 cut(s)	6
PciI	ACATGT	1 cut(s)	1974
PciSI	GCTCTTC	2 cut(s)	2120, 2528
PctI	GAATGC	4 cut(s)	513, 1422, 1450, 2389
PdmI	GAANNNNTTC	1 cut(s)	2214
PfeI	GAWTC	6 cut(s)	680, 997, 1028, 1331, 2003, 2144
PfoI	TCCNGGA	1 cut(s)	1745
PkrI	GCNGC	6 cut(s)	19, 364, 961, 1261, 1888, 2068
PleI	GAGTC	2 cut(s)	2363, 2430
PpsI	GAGTC	2 cut(s)	2363, 2430
PscI	ACATGT	1 cut(s)	1974
PshAI	GACNNNNGTC	1 cut(s)	1244
PshBI	ATTAAT	2 cut(s)	2160, 2325
PsiI	TTATAA	2 cut(s)	1454, 1619
Psp124BI	GAGCTC	2 cut(s)	250, 2540
Psp6I	CCWGG	3 cut(s)	1356, 1745, 2557
PspGI	CCWGG	3 cut(s)	1356, 1745, 2557
PspN4I	GGNNCC	3 cut(s)	570, 651, 2343
PspPI	GGNCC	2 cut(s)	2246, 2578
PstI	CTGCAG	2 cut(s)	1873, 2180
PsuI	RGATCY	2 cut(s)	568, 2278
RsaI	GTAC	5 cut(s)	207, 290, 329, 857, 1597
RsaNI	GTAC	5 cut(s)	206, 289, 328, 856, 1596
RseI	CAYNNNNRTG	3 cut(s)	1005, 1308, 2394
SacI	GAGCTC	2 cut(s)	250, 2540
SapI	GCTCTTC	2 cut(s)	2120, 2528
SaqAI	TTAA	9 cut(s)	71, 594, 1317, 1577, 2160, 2192, 2325, 2433, 2644
SatI	GCNGC	6 cut(s)	18, 363, 960, 1260, 1887, 2067
Sau3AI	GATC	7 cut(s)	3, 240, 568, 1582, 2092, 2278, 2522
Sau96I	GGNCC	2 cut(s)	2246, 2578
SchI	GAGTC	2 cut(s)	2364, 2431
ScrFI	CCNGG	4 cut(s)	550, 1358, 1747, 2559
SduI	GDGCHC	4 cut(s)	250, 262, 396, 2540
SfaNI	GCATC	7 cut(s)	795, 1525, 1630, 1869, 2338, 2376, 2497
SfcI	CTRYAG	2 cut(s)	1869, 2176
SinI	GGWCC	2 cut(s)	2246, 2578
SmiMI	CAYNNNNRTG	3 cut(s)	1005, 1308, 2394
SpeI	ACTAGT	2 cut(s)	100, 443
SphI	GCATGC	1 cut(s)	2382
SsiI	CCGC	8 cut(s)	380, 671, 918, 1040, 1550, 2186, 2474, 2606
SspI	AATATT	1 cut(s)	1288
SspMI	CTAG	6 cut(s)	101, 444, 663, 1019, 2315, 2496
SstI	GAGCTC	2 cut(s)	250, 2540
StyD4I	CCNGG	4 cut(s)	548, 1356, 1745, 2557
TaaI	ACNGT	2 cut(s)	1595, 2013
TaiI	ACGT	2 cut(s)	1853, 2223
TaqI	TCGA	4 cut(s)	557, 729, 1026, 2304
TatI	WGTACW	2 cut(s)	205, 327
TfiI	GAWTC	6 cut(s)	680, 997, 1028, 1331, 2003, 2144
Tru1I	TTAA	9 cut(s)	71, 594, 1317, 1577, 2160, 2192, 2325, 2433, 2644
Tru9I	TTAA	9 cut(s)	71, 594, 1317, 1577, 2160, 2192, 2325, 2433, 2644
TscAI	CASTG	4 cut(s)	364, 663, 1878, 2018
TseFI	GTSAC	4 cut(s)	1237, 1435, 1685, 1846
TseI	GCWGC	6 cut(s)	17, 362, 959, 1259, 1886, 2066
Tsp45I	GTSAC	4 cut(s)	1237, 1435, 1685, 1846
TspRI	CASTG	4 cut(s)	364, 663, 1878, 2018
VneI	GTGCAC	1 cut(s)	392
VpaK11BI	GGWCC	2 cut(s)	2246, 2578
VspI	ATTAAT	2 cut(s)	2160, 2325
XagI	CCTNNNNNAGG	1 cut(s)	1536
XapI	RAATTY	5 cut(s)	151, 266, 882, 1703, 1840
XbaI	TCTAGA	2 cut(s)	662, 2314
XceI	RCATGY	7 cut(s)	534, 1266, 1672, 1978, 2186, 2382, 2486
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2565
XmiI	GTMKAC	2 cut(s)	1388, 1482
XmnI	GAANNNNTTC	1 cut(s)	2214
XspI	CTAG	6 cut(s)	101, 444, 663, 1019, 2315, 2496
Zsp2I	ATGCAT	4 cut(s)	1462, 2082, 2391, 2488

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.