Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0011932

Physical Location & Seq

Genomic Coordinates Reverse (-)

10976834 .. 10977439

Gene Structure 606 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00290460.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGATCGAGCTCATACCGAGCAAAAGAATTCAAACAAGCTCAAGAAATGTACCATTCTTTGTTAAGGCAAGGTCTAGAGCCGACAAGTATACCTTCAACTTTGCCATGAAGGCTTGCACTGCTGCATTGGATTTTGAAGAGGGTGTATTGGTGCACCGTGAAGTGAAATGTGCGGGAGAGGTGTTTGATAGAATGCCCGAGAAAGATGTTGTGGCATGTAATGCTTTGATTGCCGGGTTAGCGAAAAGCGAGGATCCTAATGAAGCGGTGTCTAGATTGGGAGATATTGATTCTTGTAGGTGCATCCATGGGTATGTGGTTAGGAGGGAGTTGGGTTCGCAGGTTTCCAATGGGTTGATTGATATGTATTGCAAGTGTGGAGATGTGGATGTTGCTCGCGTGGTTTTTAACATGATGCGGGGCAATGATGGTGGTGGTGTTTTGTGGGGACAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

151

Amino Acids

16.66

Weight (kDa)

6.72

Isoelectric Point (pI)

49.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011932)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39620 AT2G40720
fragaria_vesca	FvH4_7g21891
malus_domestica	MD07G1193300.v1.1
prunus_persica	Prupe.2G231000_v2.0.a1
pyrus_communis	pycom07g18250
rosa_chinensis	RchiOBHm_Chr1g0366141
rosa_laevigata	RLG00000027363
rosa_multiflora	Rmu_co8484073.1_g000001 Rmu_sc0003987.1_g000001
rosa_roxburghii	Rroxscaffold_4G00290450 Rroxscaffold_4G00290460
rosa_rugosa	Rorug01G0327800 Rorug01G0327900
rosa_samantha	Rh1AG335900 Rh1BG297300 Rh1CG313300 Rh1DG329100
rosa_wichuraiana	Rw1G029800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	331
AccI	GTMKAC	1 cut(s)	89
AccII	CGCG	1 cut(s)	399
AciI	CCGC	3 cut(s)	173, 266, 418
AclWI	GGATC	2 cut(s)	248, 261
AcsI	RAATTY	1 cut(s)	27
AfaI	GTAC	1 cut(s)	51
AgsI	TTSAA	3 cut(s)	32, 97, 137
AluBI	AGCT	2 cut(s)	10, 39
AluI	AGCT	2 cut(s)	10, 39
Alw21I	GWGCWC	2 cut(s)	12, 156
Alw44I	GTGCAC	1 cut(s)	152
AlwI	GGATC	2 cut(s)	248, 261
Ama87I	CYCGRG	1 cut(s)	197
ApaLI	GTGCAC	1 cut(s)	152
ApeKI	GCWGC	1 cut(s)	122
ApoI	RAATTY	1 cut(s)	27
AsuC2I	CCSGG	1 cut(s)	235
AvaI	CYCGRG	1 cut(s)	197
BaeGI	GKGCMC	1 cut(s)	156
BamHI	GGATCC	1 cut(s)	253
BanII	GRGCYC	1 cut(s)	12
Bbv12I	GWGCWC	2 cut(s)	12, 156
BbvI	GCAGC	1 cut(s)	109
BccI	CCATC	1 cut(s)	422
BcnI	CCSGG	1 cut(s)	235
BfaI	CTAG	2 cut(s)	75, 273
BfuAI	ACCTGC	1 cut(s)	331
BglI	GCCNNNNNGGC	1 cut(s)	110
BisI	GCNGC	1 cut(s)	123
BlsI	GCNGC	1 cut(s)	124
Bme1390I	CCNGG	1 cut(s)	235
BmeT110I	CYCGRG	1 cut(s)	197
BmiI	GGNNCC	1 cut(s)	255
BmrFI	CCNGG	1 cut(s)	235
BmsI	GCATC	2 cut(s)	312, 405
BpuEI	CTTGAG	1 cut(s)	25
BpuMI	CCSGG	1 cut(s)	235
BsaJI	CCNNGG	1 cut(s)	307
Bse3DI	GCAATG	1 cut(s)	430
BseDI	CCNNGG	1 cut(s)	307
BseGI	GGATG	2 cut(s)	303, 394
BseMI	GCAATG	1 cut(s)	430
BseSI	GKGCMC	1 cut(s)	156
BseXI	GCAGC	1 cut(s)	109
Bsh1236I	CGCG	1 cut(s)	399
BsiHKAI	GWGCWC	2 cut(s)	12, 156
BsiHKCI	CYCGRG	1 cut(s)	197
BsiSI	CCGG	1 cut(s)	234
BsmI	GAATGC	1 cut(s)	198
BsoBI	CYCGRG	1 cut(s)	197
Bsp1286I	GDGCHC	2 cut(s)	12, 156
Bsp143I	GATC	2 cut(s)	3, 253
Bsp19I	CCATGG	1 cut(s)	307
BspACI	CCGC	3 cut(s)	173, 266, 418
BspFNI	CGCG	1 cut(s)	399
BspLI	GGNNCC	1 cut(s)	255
BspMI	ACCTGC	1 cut(s)	331
BspPI	GGATC	2 cut(s)	248, 261
BsrDI	GCAATG	1 cut(s)	430
BssECI	CCNNGG	1 cut(s)	307
BssMI	GATC	2 cut(s)	3, 253
BssNAI	GTATAC	1 cut(s)	90
BssT1I	CCWWGG	1 cut(s)	307
Bst1107I	GTATAC	1 cut(s)	90
Bst4CI	ACNGT	1 cut(s)	158
Bst6I	CTCTTC	1 cut(s)	132
BstAPI	GCANNNNNTGC	1 cut(s)	221
BstC8I	GCNNGC	2 cut(s)	115, 397
BstDSI	CCRYGG	1 cut(s)	307
BstF5I	GGATG	2 cut(s)	303, 394
BstFNI	CGCG	1 cut(s)	399
BstKTI	GATC	2 cut(s)	6, 256
BstMBI	GATC	2 cut(s)	3, 253
BstMWI	GCNNNNNNNGC	5 cut(s)	110, 119, 221, 230, 239
BstNSI	RCATGY	1 cut(s)	219
BstSCI	CCNGG	1 cut(s)	233
BstSLI	GKGCMC	1 cut(s)	156
BstUI	CGCG	1 cut(s)	399
BstV1I	GCAGC	1 cut(s)	109
BstX2I	RGATCY	1 cut(s)	253
BstYI	RGATCY	1 cut(s)	253
BstZ17I	GTATAC	1 cut(s)	90
BtgI	CCRYGG	1 cut(s)	307
BtsCI	GGATG	2 cut(s)	303, 394
BtsI	GCAGTG	1 cut(s)	117
BtsIMutI	CAGTG	1 cut(s)	117
BveI	ACCTGC	1 cut(s)	331
Cac8I	GCNNGC	2 cut(s)	115, 397
Csp6I	GTAC	1 cut(s)	50
CspCI	CAANNNNNGTGG	2 cut(s)	412, 447
CviAII	CATG	4 cut(s)	106, 216, 308, 412
CviJI	RGCY	4 cut(s)	10, 39, 80, 113
CviKI_1	RGCY	4 cut(s)	10, 39, 80, 113
CviQI	GTAC	1 cut(s)	50
DpnI	GATC	2 cut(s)	5, 255
DpnII	GATC	2 cut(s)	3, 253
Eam1104I	CTCTTC	1 cut(s)	132
EarI	CTCTTC	1 cut(s)	132
Ecl136II	GAGCTC	1 cut(s)	10
Eco130I	CCWWGG	1 cut(s)	307
Eco24I	GRGCYC	1 cut(s)	12
Eco53kI	GAGCTC	1 cut(s)	10
Eco88I	CYCGRG	1 cut(s)	197
EcoICRI	GAGCTC	1 cut(s)	10
EcoRI	GAATTC	1 cut(s)	27
EcoT14I	CCWWGG	1 cut(s)	307
EcoT38I	GRGCYC	1 cut(s)	12
ErhI	CCWWGG	1 cut(s)	307
FaeI	CATG	4 cut(s)	109, 219, 311, 415
FaiI	YATR	8 cut(s)	14, 90, 107, 217, 309, 315, 365, 413
FalI	AAGNNNNNCTT	2 cut(s)	77, 109
FatI	CATG	4 cut(s)	105, 215, 307, 411
FauI	CCCGC	2 cut(s)	166, 411
FblI	GTMKAC	1 cut(s)	89
Fnu4HI	GCNGC	1 cut(s)	123
FokI	GGATG	2 cut(s)	290, 401
FriOI	GRGCYC	1 cut(s)	12
Fsp4HI	GCNGC	1 cut(s)	123
FspBI	CTAG	2 cut(s)	75, 273
GluI	GCNGC	1 cut(s)	123
HapII	CCGG	1 cut(s)	234
Hin1II	CATG	4 cut(s)	109, 219, 311, 415
HinfI	GANTC	1 cut(s)	290
HpaII	CCGG	1 cut(s)	234
Hpy166II	GTNNAC	2 cut(s)	90, 154
Hpy188III	TCNNGA	3 cut(s)	42, 75, 273
Hpy8I	GTNNAC	2 cut(s)	90, 154
HpyAV	CCTTC	2 cut(s)	103, 103
HpyCH4III	ACNGT	1 cut(s)	158
HpyCH4V	TGCA	5 cut(s)	117, 125, 154, 303, 372
HpyF10VI	GCNNNNNNNGC	5 cut(s)	110, 119, 221, 230, 239
Hsp92II	CATG	4 cut(s)	109, 219, 311, 415
Kzo9I	GATC	2 cut(s)	3, 253
LpnPI	CCDG	2 cut(s)	247, 326
Lsp1109I	GCAGC	1 cut(s)	109
LweI	GCATC	2 cut(s)	312, 405
MaeI	CTAG	2 cut(s)	75, 273
MalI	GATC	2 cut(s)	5, 255
MboI	GATC	2 cut(s)	3, 253
MboII	GAAGA	1 cut(s)	149
MflI	RGATCY	1 cut(s)	253
MhlI	GDGCHC	2 cut(s)	12, 156
MluCI	AATT	1 cut(s)	27
MnlI	CCTC	4 cut(s)	133, 172, 244, 318
MseI	TTAA	2 cut(s)	63, 408
MslI	CAYNNNNRTG	1 cut(s)	312
MspI	CCGG	1 cut(s)	234
MspR9I	CCNGG	1 cut(s)	235
Mva1269I	GAATGC	1 cut(s)	198
MvnI	CGCG	1 cut(s)	399
MwoI	GCNNNNNNNGC	5 cut(s)	110, 119, 221, 230, 239
NciI	CCSGG	1 cut(s)	235
NcoI	CCATGG	1 cut(s)	307
NdeII	GATC	2 cut(s)	3, 253
NlaIII	CATG	4 cut(s)	109, 219, 311, 415
NlaIV	GGNNCC	1 cut(s)	255
NspI	RCATGY	1 cut(s)	219
PctI	GAATGC	1 cut(s)	198
PfeI	GAWTC	1 cut(s)	290
PkrI	GCNGC	1 cut(s)	124
Psp124BI	GAGCTC	1 cut(s)	12
PspN4I	GGNNCC	1 cut(s)	255
PsuI	RGATCY	1 cut(s)	253
RsaI	GTAC	1 cut(s)	51
RsaNI	GTAC	1 cut(s)	50
RseI	CAYNNNNRTG	1 cut(s)	312
SacI	GAGCTC	1 cut(s)	12
SaqAI	TTAA	2 cut(s)	63, 408
SatI	GCNGC	1 cut(s)	123
Sau3AI	GATC	2 cut(s)	3, 253
ScrFI	CCNGG	1 cut(s)	235
SduI	GDGCHC	2 cut(s)	12, 156
SetI	ASST	7 cut(s)	12, 41, 74, 95, 183, 302, 345
SfaNI	GCATC	2 cut(s)	312, 405
SmiMI	CAYNNNNRTG	1 cut(s)	312
SmlI	CTYRAG	1 cut(s)	40
SmoI	CTYRAG	1 cut(s)	40
Sse9I	AATT	1 cut(s)	27
SsiI	CCGC	3 cut(s)	173, 266, 418
SspMI	CTAG	2 cut(s)	75, 273
SstI	GAGCTC	1 cut(s)	12
StyD4I	CCNGG	1 cut(s)	233
StyI	CCWWGG	1 cut(s)	307
TaaI	ACNGT	1 cut(s)	158
TaqI	TCGA	1 cut(s)	6
TasI	AATT	1 cut(s)	27
TfiI	GAWTC	1 cut(s)	290
Tru1I	TTAA	2 cut(s)	63, 408
Tru9I	TTAA	2 cut(s)	63, 408
TscAI	CASTG	1 cut(s)	124
TseI	GCWGC	1 cut(s)	122
TspDTI	ATGAA	2 cut(s)	122, 276
TspRI	CASTG	1 cut(s)	124
VneI	GTGCAC	1 cut(s)	152
XapI	RAATTY	1 cut(s)	27
XbaI	TCTAGA	2 cut(s)	74, 272
XceI	RCATGY	1 cut(s)	219
XmiI	GTMKAC	1 cut(s)	89
XspI	CTAG	2 cut(s)	75, 273

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.