Rmu_co8484073.1_g000001

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8484073.1
OG0011932
Physical Location & Seq
Reverse (-)
866 .. 2146
1281 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8484073.1_g000001.1.cds

Sequence Viewer

Length: 1281 bp
atgtatgctaaatgtggattctttactcctgccttgattatattcaacagaatgccaactaaagatgttgtgacgtggaatgcacttataaatgcatatacccaaataggtgatgtctaccatgctattgatatgttggatgagttatggttgtctggaataaaacctgatgcaggaacgatggtgggtatggtctcggcttgcagcttattaaatgatctaaatcatggtacttgtattcatggacaaattataaagaatgggtttgaacatgatgcacctttgaaaaatgctcttattggcatgtattgcaaatgtggtgacatttcgtcagctgaatttctatttaatagaacaaaattaatgaaagatgtggtatcctggaatgtaatgattgcaggatacatgcagggtggatatgccagggaagctatatctgtgtttcaccagatgaaattagagaactgtcagcctaatttagtcacatttgttagcatccttcctgcagtggcatatctagcagcattacgagagggcatggcttttcatgcctgcattatccagaatgggtttctatctaatacacttgtgggaaattgtcttattgacatgtatgctaaatgcggacagctcgatcattcagaaaaatgctttgaagagatggaactcaaggacaaagtttcgtggaacacattgcttgcagcgtatgcaatgcacggacaaggggatcatgcttttgcacttttatcgctgatgcaaaagagctgtatccaacttgattctgtgtcattcatcagtctcttgtctgcctgcagacatgcgggtttgataaaagaaggaaaggaagtttttcaggtcatgtgtgaaaagcaccatcttgaaccagagttggaacattatgcttgtatggtagatcttctaggccgtgctggtttctttgatgaagctttagatttgattaatacgatgcccatggagcctgatgccggagtctggggagcattattaggggcatgcaggatgcattcaaatgcaaagttgggagaagttgcgttgagtcatcttgttaaccttgagcctacaaatgcaaccaattacatagctttatcagatatacatgcacattctgctagatggggtgatgcttgcaagacaagatcaaagatgaagagctctgggtcgaagaaaatgccaggatgtagttgggtagaggtccaaaacagggttcatacgctacaggcgggtgactacaactaccgccaacttggaacagagagctga

Protein Analysis

426

Amino Acids

47.1

Weight (kDa)

6.04

Isoelectric Point (pI)

35.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011932)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G39620 AT2G40720
fragaria_vesca FvH4_7g21891
malus_domestica MD07G1193300.v1.1
prunus_persica Prupe.2G231000_v2.0.a1
pyrus_communis pycom07g18250
rosa_chinensis RchiOBHm_Chr1g0366141
rosa_laevigata RLG00000027363
rosa_multiflora Rmu_co8484073.1_g000001 Rmu_sc0003987.1_g000001
rosa_roxburghii Rroxscaffold_4G00290450 Rroxscaffold_4G00290460
rosa_rugosa Rorug01G0327800 Rorug01G0327900
rosa_samantha Rh1AG335900 Rh1BG297300 Rh1CG313300 Rh1DG329100
rosa_wichuraiana Rw1G029800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 89, 254
AccI GTMKAC 1 cut(s) 117
AciI CCGC 4 cut(s) 624, 821, 1241, 1258
AclWI GGATC 1 cut(s) 735
AcsI RAATTY 1 cut(s) 338
AfaI GTAC 1 cut(s) 232
AfiI CCNNNNNNNGG 4 cut(s) 173, 986, 993, 1222
AflIII ACRYGT 1 cut(s) 609
AgsI TTSAA 6 cut(s) 46, 269, 286, 656, 881, 1029
AhdI GACNNNNNGTC 1 cut(s) 328
AjiI CACGTC 1 cut(s) 75
AjnI CCWGG 3 cut(s) 380, 422, 1192
AjuI GAANNNNNNNTTGG 2 cut(s) 1209, 1241
AluBI AGCT 9 cut(s) 207, 335, 431, 631, 765, 947, 1103, 1173, 1278
AluI AGCT 9 cut(s) 207, 335, 431, 631, 765, 947, 1103, 1173, 1278
Alw21I GWGCWC 1 cut(s) 1175
Alw26I GTCTC 2 cut(s) 199, 803
AlwI GGATC 1 cut(s) 735
AoxI GGCC 1 cut(s) 922
ApeKI GCWGC 3 cut(s) 204, 521, 701
ApoI RAATTY 1 cut(s) 338
AseI ATTAAT 2 cut(s) 362, 960
Asp700I GAANNNNTTC 1 cut(s) 849
AspS9I GGNCC 1 cut(s) 1213
AsuHPI GGTGA 5 cut(s) 122, 332, 437, 1151, 1256
AvaII GGWCC 1 cut(s) 1213
BanII GRGCYC 1 cut(s) 1175
Bbv12I GWGCWC 1 cut(s) 1175
BbvI GCAGC 3 cut(s) 216, 533, 713
BccI CCATC 4 cut(s) 175, 655, 882, 1128
BceAI ACGGC 1 cut(s) 909
BcgI CGANNNNNNTGC 4 cut(s) 729, 763, 1171, 1205
BciT130I CCWGG 3 cut(s) 382, 424, 1194
BciVI GTATCC 3 cut(s) 388, 395, 779
BcoDI GTCTC 2 cut(s) 199, 803
BfaI CTAG 3 cut(s) 518, 920, 1131
BfmI CTRYAG 3 cut(s) 504, 811, 1235
BfuI GTATCC 3 cut(s) 388, 395, 779
BglII AGATCT 1 cut(s) 913
BisI GCNGC 3 cut(s) 205, 522, 702
BlsI GCNGC 3 cut(s) 206, 523, 703
Bme1390I CCNGG 3 cut(s) 382, 424, 1194
Bme18I GGWCC 1 cut(s) 1213
BmeRI GACNNNNNGTC 1 cut(s) 328
BmgBI CACGTC 1 cut(s) 75
BmgT120I GGNCC 1 cut(s) 1213
BmiI GGNNCC 1 cut(s) 978
BmrFI CCNGG 3 cut(s) 382, 424, 1194
BmsI GCATC 8 cut(s) 160, 265, 504, 744, 957, 973, 1011, 1132
BpuEI CTTGAG 2 cut(s) 653, 1094
BsaBI GATNNNNATC 1 cut(s) 222
BsaI GGTCTC 1 cut(s) 199
BsaJI CCNNGG 2 cut(s) 423, 972
Bsc4I CCNNNNNNNGG 4 cut(s) 173, 986, 993, 1222
Bse3DI GCAATG 2 cut(s) 692, 717
Bse8I GATNNNNATC 1 cut(s) 222
BseBI CCWGG 3 cut(s) 382, 424, 1194
BseDI CCNNGG 2 cut(s) 423, 972
BseGI GGATG 4 cut(s) 145, 495, 1026, 1202
BseJI GATNNNNATC 1 cut(s) 222
BseLI CCNNNNNNNGG 4 cut(s) 173, 986, 993, 1222
BseMI GCAATG 2 cut(s) 692, 717
BseXI GCAGC 3 cut(s) 216, 533, 713
BshFI GGCC 1 cut(s) 924
BsiHKAI GWGCWC 1 cut(s) 1175
BsiSI CCGG 1 cut(s) 987
BslI CCNNNNNNNGG 4 cut(s) 173, 986, 993, 1222
BsmAI GTCTC 2 cut(s) 199, 803
BsmI GAATGC 3 cut(s) 57, 85, 1024
BsnI GGCC 1 cut(s) 924
Bso31I GGTCTC 1 cut(s) 199
Bsp1286I GDGCHC 1 cut(s) 1175
Bsp143I GATC 5 cut(s) 217, 634, 727, 913, 1157
Bsp19I CCATGG 1 cut(s) 972
BspACI CCGC 4 cut(s) 624, 821, 1241, 1258
BspANI GGCC 1 cut(s) 924
BspLI GGNNCC 1 cut(s) 978
BspMAI CTGCAG 2 cut(s) 508, 815
BspPI GGATC 1 cut(s) 735
BspQI GCTCTTC 1 cut(s) 1163
BspTNI GGTCTC 1 cut(s) 199
BsrDI GCAATG 2 cut(s) 692, 717
BssECI CCNNGG 2 cut(s) 423, 972
BssMI GATC 5 cut(s) 217, 634, 727, 913, 1157
BssT1I CCWWGG 1 cut(s) 972
Bst2UI CCWGG 3 cut(s) 382, 424, 1194
Bst4CI ACNGT 1 cut(s) 467
Bst6I CTCTTC 2 cut(s) 651, 1163
BstAPI GCANNNNNTGC 3 cut(s) 309, 707, 1127
BstC8I GCNNGC 6 cut(s) 202, 553, 699, 811, 1015, 1147
BstDSI CCRYGG 1 cut(s) 972
BstENI CCTNNNNNAGG 1 cut(s) 171
BstF5I GGATG 4 cut(s) 145, 495, 1026, 1202
BstKTI GATC 5 cut(s) 220, 637, 730, 916, 1160
BstMAI GTCTC 2 cut(s) 199, 803
BstMBI GATC 5 cut(s) 217, 634, 727, 913, 1157
BstMWI GCNNNNNNNGC 7 cut(s) 309, 428, 518, 548, 707, 976, 1127
BstNI CCWGG 3 cut(s) 382, 424, 1194
BstNSI RCATGY 6 cut(s) 307, 409, 613, 821, 1017, 1121
BstSCI CCNGG 3 cut(s) 380, 422, 1192
BstSFI CTRYAG 3 cut(s) 504, 811, 1235
BstV1I GCAGC 3 cut(s) 216, 533, 713
BstX2I RGATCY 1 cut(s) 913
BstYI RGATCY 1 cut(s) 913
BsuI GTATCC 3 cut(s) 388, 395, 779
BsuRI GGCC 1 cut(s) 924
BtgI CCRYGG 1 cut(s) 972
BtrI CACGTC 1 cut(s) 75
BtsCI GGATG 4 cut(s) 145, 495, 1026, 1202
BtsI GCAGTG 1 cut(s) 513
BtsIMutI CAGTG 1 cut(s) 513
Cac8I GCNNGC 6 cut(s) 202, 553, 699, 811, 1015, 1147
Cfr13I GGNCC 1 cut(s) 1213
Csp6I GTAC 1 cut(s) 231
CviQI GTAC 1 cut(s) 231
DpnI GATC 5 cut(s) 219, 636, 729, 915, 1159
DpnII GATC 5 cut(s) 217, 634, 727, 913, 1157
DriI GACNNNNNGTC 1 cut(s) 328
Eam1104I CTCTTC 2 cut(s) 651, 1163
Eam1105I GACNNNNNGTC 1 cut(s) 328
EarI CTCTTC 2 cut(s) 651, 1163
Ecl136II GAGCTC 1 cut(s) 1173
Eco130I CCWWGG 1 cut(s) 972
Eco24I GRGCYC 1 cut(s) 1175
Eco31I GGTCTC 1 cut(s) 199
Eco47I GGWCC 1 cut(s) 1213
Eco53kI GAGCTC 1 cut(s) 1173
EcoICRI GAGCTC 1 cut(s) 1173
EcoNI CCTNNNNNAGG 1 cut(s) 171
EcoRII CCWGG 3 cut(s) 380, 422, 1192
EcoT14I CCWWGG 1 cut(s) 972
EcoT22I ATGCAT 2 cut(s) 97, 1026
EcoT38I GRGCYC 1 cut(s) 1175
ErhI CCWWGG 1 cut(s) 972
FauI CCCGC 2 cut(s) 814, 1234
FblI GTMKAC 1 cut(s) 117
Fnu4HI GCNGC 3 cut(s) 205, 522, 702
FokI GGATG 4 cut(s) 152, 482, 1033, 1209
FriOI GRGCYC 1 cut(s) 1175
Fsp4HI GCNGC 3 cut(s) 205, 522, 702
FspBI CTAG 3 cut(s) 518, 920, 1131
GluI GCNGC 3 cut(s) 205, 522, 702
HaeIII GGCC 1 cut(s) 924
HapII CCGG 1 cut(s) 987
HincII GTYRAC 1 cut(s) 1069
HindII GTYRAC 1 cut(s) 1069
HindIII AAGCTT 1 cut(s) 945
HinfI GANTC 4 cut(s) 18, 779, 990, 1057
HpaI GTTAAC 1 cut(s) 1069
HpaII CCGG 1 cut(s) 987
HphI GGTGA 5 cut(s) 122, 332, 437, 1151, 1256
Hpy166II GTNNAC 2 cut(s) 118, 1069
Hpy188I TCNGA 2 cut(s) 643, 1111
Hpy188III TCNNGA 3 cut(s) 156, 562, 878
Hpy8I GTNNAC 2 cut(s) 118, 1069
HpyAV CCTTC 2 cut(s) 509, 830
HpyCH4III ACNGT 1 cut(s) 467
HpyCH4IV ACGT 1 cut(s) 74
HpyF10VI GCNNNNNNNGC 7 cut(s) 309, 428, 518, 548, 707, 976, 1127
HpySE526I ACGT 1 cut(s) 74
KspAI GTTAAC 1 cut(s) 1069
Kzo9I GATC 5 cut(s) 217, 634, 727, 913, 1157
LguI GCTCTTC 1 cut(s) 1163
LmnI GCTCC 2 cut(s) 976, 998
Lsp1109I GCAGC 3 cut(s) 216, 533, 713
LweI GCATC 8 cut(s) 160, 265, 504, 744, 957, 973, 1011, 1132
MaeI CTAG 3 cut(s) 518, 920, 1131
MaeII ACGT 1 cut(s) 74
MaeIII GTNAC 4 cut(s) 70, 320, 481, 1244
MalI GATC 5 cut(s) 219, 636, 729, 915, 1159
MboI GATC 5 cut(s) 217, 634, 727, 913, 1157
MboII GAAGA 4 cut(s) 668, 908, 1180, 1195
MflI RGATCY 1 cut(s) 913
MhlI GDGCHC 1 cut(s) 1175
MluCI AATT 7 cut(s) 249, 338, 359, 455, 475, 595, 1093
MlyI GAGTC 2 cut(s) 999, 1066
MmeI TCCRAC 3 cut(s) 117, 796, 870
MnlI CCTC 2 cut(s) 526, 1204
Mph1103I ATGCAT 2 cut(s) 97, 1026
MroXI GAANNNNTTC 1 cut(s) 849
MseI TTAA 5 cut(s) 212, 348, 362, 960, 1068
MslI CAYNNNNRTG 1 cut(s) 1029
MspA1I CMGCKG 1 cut(s) 335
MspI CCGG 1 cut(s) 987
MspR9I CCNGG 3 cut(s) 382, 424, 1194
Mva1269I GAATGC 3 cut(s) 57, 85, 1024
MvaI CCWGG 3 cut(s) 382, 424, 1194
MwoI GCNNNNNNNGC 7 cut(s) 309, 428, 518, 548, 707, 976, 1127
NcoI CCATGG 1 cut(s) 972
NdeII GATC 5 cut(s) 217, 634, 727, 913, 1157
NlaIV GGNNCC 1 cut(s) 978
NmeAIII GCCGAG 1 cut(s) 176
NmuCI GTSAC 4 cut(s) 70, 320, 481, 1244
NsiI ATGCAT 2 cut(s) 97, 1026
NspI RCATGY 6 cut(s) 307, 409, 613, 821, 1017, 1121
PaeI GCATGC 1 cut(s) 1017
PciI ACATGT 1 cut(s) 609
PciSI GCTCTTC 1 cut(s) 1163
PctI GAATGC 3 cut(s) 57, 85, 1024
PdmI GAANNNNTTC 1 cut(s) 849
PfeI GAWTC 2 cut(s) 18, 779
PfoI TCCNGGA 1 cut(s) 380
PkrI GCNGC 3 cut(s) 206, 523, 703
PleI GAGTC 2 cut(s) 998, 1065
PpsI GAGTC 2 cut(s) 998, 1065
PscI ACATGT 1 cut(s) 609
PshBI ATTAAT 2 cut(s) 362, 960
PsiI TTATAA 2 cut(s) 89, 254
Psp124BI GAGCTC 1 cut(s) 1175
Psp6I CCWGG 3 cut(s) 380, 422, 1192
PspGI CCWGG 3 cut(s) 380, 422, 1192
PspN4I GGNNCC 1 cut(s) 978
PspPI GGNCC 1 cut(s) 1213
PstI CTGCAG 2 cut(s) 508, 815
PsuI RGATCY 1 cut(s) 913
PvuII CAGCTG 1 cut(s) 335
RsaI GTAC 1 cut(s) 232
RsaNI GTAC 1 cut(s) 231
RseI CAYNNNNRTG 1 cut(s) 1029
SacI GAGCTC 1 cut(s) 1175
SapI GCTCTTC 1 cut(s) 1163
SaqAI TTAA 5 cut(s) 212, 348, 362, 960, 1068
SatI GCNGC 3 cut(s) 205, 522, 702
Sau3AI GATC 5 cut(s) 217, 634, 727, 913, 1157
Sau96I GGNCC 1 cut(s) 1213
SchI GAGTC 2 cut(s) 999, 1066
ScrFI CCNGG 3 cut(s) 382, 424, 1194
SduI GDGCHC 1 cut(s) 1175
SfaNI GCATC 8 cut(s) 160, 265, 504, 744, 957, 973, 1011, 1132
SfcI CTRYAG 3 cut(s) 504, 811, 1235
SinI GGWCC 1 cut(s) 1213
SmiMI CAYNNNNRTG 1 cut(s) 1029
SmlI CTYRAG 2 cut(s) 668, 1073
SmoI CTYRAG 2 cut(s) 668, 1073
SphI GCATGC 1 cut(s) 1017
Sse9I AATT 7 cut(s) 249, 338, 359, 455, 475, 595, 1093
SsiI CCGC 4 cut(s) 624, 821, 1241, 1258
SspMI CTAG 3 cut(s) 518, 920, 1131
SstI GAGCTC 1 cut(s) 1175
StyD4I CCNGG 3 cut(s) 380, 422, 1192
StyI CCWWGG 1 cut(s) 972
TaaI ACNGT 1 cut(s) 467
TaiI ACGT 1 cut(s) 77
TaqI TCGA 2 cut(s) 633, 1181
TasI AATT 7 cut(s) 249, 338, 359, 455, 475, 595, 1093
TfiI GAWTC 2 cut(s) 18, 779
Tru1I TTAA 5 cut(s) 212, 348, 362, 960, 1068
Tru9I TTAA 5 cut(s) 212, 348, 362, 960, 1068
TscAI CASTG 1 cut(s) 513
TseFI GTSAC 4 cut(s) 70, 320, 481, 1244
TseI GCWGC 3 cut(s) 204, 521, 701
Tsp45I GTSAC 4 cut(s) 70, 320, 481, 1244
TspDTI ATGAA 8 cut(s) 230, 380, 467, 536, 781, 957, 1181, 1217
TspGWI ACGGA 1 cut(s) 732
TspRI CASTG 1 cut(s) 513
VpaK11BI GGWCC 1 cut(s) 1213
VspI ATTAAT 2 cut(s) 362, 960
XagI CCTNNNNNAGG 1 cut(s) 171
XapI RAATTY 1 cut(s) 338
XceI RCATGY 6 cut(s) 307, 409, 613, 821, 1017, 1121
XcmI CCANNNNNNNNNTGG 1 cut(s) 1200
XmiI GTMKAC 1 cut(s) 117
XmnI GAANNNNTTC 1 cut(s) 849
XspI CTAG 3 cut(s) 518, 920, 1131
Zsp2I ATGCAT 2 cut(s) 97, 1026
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.