Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003987.1

Orthogroup ID

OG0011932

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 1214

Gene Structure 1213 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003987.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1213 bp

atgaaacaattccatgcagctaccaagaattatcaacactatcttggcctattctcttcatgcaaagatttgaagtccctgcttcaaatccatgcccaattgatagtctcaggtctccaacaacacccttccacactgacccatctcataaattcctactcttccttccaaagatgtaatttttcgcgctcagttttcaattctgcgcaaaacccaagtgttagattatggaactacatgatcagagctcataccagagcaaaagaattcaaacaagctcaagaaatgtaccattctttgttaaagctaggtctagagccagacaagtataccttcaactttgccctgaaggcttgcactgctgcattggattttgaagagggtgtattggtgcaccgtgaagtagagcgtaaagggttagagtatgatgtgtttattgggaccagtctgattgatatgtattgtaaaatgggggcggtgaaatgtgcaggagaggtgtttgatagaatgcctgagaaagatgttgtggcatgtaatgctttgattgccgggttggcgaaaagcgaggatcctaaggaagcagtggagttttttaggaggatgcaatgttgggggatgggggtgaatttagtgagcttgtttaacttggttccagcagtgtctagattgggagatattgattcttgtaggtgtattcatgggtatgtggttaggagggagttgggttcagaggtttcaaatgggttggttgatatgtattgcaagtgtggagatgtggatgttgctcgcagggttttcgagatggtgcagggtggtggtgatgatggtggtgttttgtgggggacaatgatggcggggtacgcgagtaatggatgttttgttgaggttttggagttgtttgattgcttgaaaggggaggggagtagaatgaataaggtttgtatcatgagtgcacttttggctgctactgagattagagatttggagaaagggagggagatccatctttgtgctttagaagtagaagtcgattctgatgtttcggttgctacttctataatgaccatgtatgcaaaatgtggagaaatagagaaggcaatgcaattgtttgagagacttggggaaagagatttagttgcttggtctgcacttatatctgcttgtgtccagtctggttttcctgaagtggcattgtctctctttcgagataggc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

404

Amino Acids

45.12

Weight (kDa)

5.98

Isoelectric Point (pI)

43.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011932)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39620 AT2G40720
fragaria_vesca	FvH4_7g21891
malus_domestica	MD07G1193300.v1.1
prunus_persica	Prupe.2G231000_v2.0.a1
pyrus_communis	pycom07g18250
rosa_chinensis	RchiOBHm_Chr1g0366141
rosa_laevigata	RLG00000027363
rosa_multiflora	Rmu_co8484073.1_g000001 Rmu_sc0003987.1_g000001
rosa_roxburghii	Rroxscaffold_4G00290450 Rroxscaffold_4G00290460
rosa_rugosa	Rorug01G0327800 Rorug01G0327900
rosa_samantha	Rh1AG335900 Rh1BG297300 Rh1CG313300 Rh1DG329100
rosa_wichuraiana	Rw1G029800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	207
AccI	GTMKAC	1 cut(s)	329
AccII	CGCG	2 cut(s)	187, 863
AciI	CCGC	2 cut(s)	476, 854
AclWI	GGATC	3 cut(s)	563, 576, 994
AcsI	RAATTY	3 cut(s)	151, 266, 625
AcuI	CTGAAG	2 cut(s)	368, 1203
AfaI	GTAC	2 cut(s)	290, 860
AgsI	TTSAA	8 cut(s)	73, 86, 199, 271, 337, 377, 738, 910
AluBI	AGCT	5 cut(s)	20, 248, 278, 307, 636
AluI	AGCT	5 cut(s)	20, 248, 278, 307, 636
Alw21I	GWGCWC	3 cut(s)	250, 396, 955
Alw26I	GTCTC	4 cut(s)	112, 119, 1108, 1200
Alw44I	GTGCAC	2 cut(s)	392, 951
AlwI	GGATC	3 cut(s)	563, 576, 994
AoxI	GGCC	1 cut(s)	46
ApaLI	GTGCAC	2 cut(s)	392, 951
ApeKI	GCWGC	3 cut(s)	17, 362, 962
ApoI	RAATTY	3 cut(s)	151, 266, 625
Asp700I	GAANNNNTTC	1 cut(s)	8
AspLEI	GCGC	2 cut(s)	189, 208
AspS9I	GGNCC	1 cut(s)	441
AsuC2I	CCSGG	1 cut(s)	550
AsuHPI	GGTGA	3 cut(s)	490, 634, 830
AvaII	GGWCC	1 cut(s)	441
AxyI	CCTNAGG	1 cut(s)	573
BaeGI	GKGCMC	2 cut(s)	396, 955
BaeI	ACNNNNGTAYC	2 cut(s)	850, 883
BamHI	GGATCC	1 cut(s)	568
BanII	GRGCYC	1 cut(s)	250
Bbv12I	GWGCWC	3 cut(s)	250, 396, 955
BbvI	GCAGC	3 cut(s)	29, 349, 949
BccI	CCATC	6 cut(s)	150, 610, 796, 818, 844, 1011
BcgI	CGANNNNNNTGC	2 cut(s)	778, 812
BclI	TGATCA	1 cut(s)	240
BcnI	CCSGG	1 cut(s)	550
BcoDI	GTCTC	4 cut(s)	112, 119, 1108, 1200
BfaI	CTAG	3 cut(s)	308, 314, 663
BglI	GCCNNNNNGGC	2 cut(s)	350, 554
BisI	GCNGC	3 cut(s)	18, 363, 963
BlsI	GCNGC	3 cut(s)	19, 364, 964
Bme1390I	CCNGG	1 cut(s)	550
Bme18I	GGWCC	1 cut(s)	441
BmgT120I	GGNCC	1 cut(s)	441
BmiI	GGNNCC	3 cut(s)	442, 570, 651
BmrFI	CCNGG	1 cut(s)	550
BmsI	GCATC	1 cut(s)	591
BpuEI	CTTGAG	1 cut(s)	264
BpuMI	CCSGG	1 cut(s)	550
BsaI	GGTCTC	1 cut(s)	119
Bse1I	ACTGG	2 cut(s)	444, 1168
Bse21I	CCTNAGG	1 cut(s)	573
Bse3DI	GCAATG	2 cut(s)	611, 1104
BseGI	GGATG	4 cut(s)	606, 621, 784, 878
BseMI	GCAATG	2 cut(s)	611, 1104
BseMII	CTCAG	4 cut(s)	123, 204, 504, 960
BseNI	ACTGG	2 cut(s)	444, 1168
BseSI	GKGCMC	2 cut(s)	396, 955
BseXI	GCAGC	3 cut(s)	29, 349, 949
BsgI	GTGCAG	3 cut(s)	507, 827, 1131
Bsh1236I	CGCG	2 cut(s)	187, 863
BshFI	GGCC	1 cut(s)	48
BsiHKAI	GWGCWC	3 cut(s)	250, 396, 955
BsiSI	CCGG	1 cut(s)	549
BslFI	GGGAC	3 cut(s)	61, 454, 856
BsmAI	GTCTC	4 cut(s)	112, 119, 1108, 1200
BsmFI	GGGAC	3 cut(s)	61, 454, 856
BsmI	GAATGC	1 cut(s)	513
BsnI	GGCC	1 cut(s)	48
Bso31I	GGTCTC	1 cut(s)	119
Bsp1286I	GDGCHC	3 cut(s)	250, 396, 955
Bsp143I	GATC	3 cut(s)	240, 568, 999
BspACI	CCGC	2 cut(s)	476, 854
BspANI	GGCC	1 cut(s)	48
BspCNI	CTCAG	4 cut(s)	122, 203, 505, 961
BspFNI	CGCG	2 cut(s)	187, 863
BspHI	TCATGA	1 cut(s)	945
BspLI	GGNNCC	3 cut(s)	442, 570, 651
BspPI	GGATC	3 cut(s)	563, 576, 994
BspTNI	GGTCTC	1 cut(s)	119
BsrDI	GCAATG	2 cut(s)	611, 1104
BsrI	ACTGG	2 cut(s)	444, 1168
BssMI	GATC	3 cut(s)	240, 568, 999
BssNAI	GTATAC	1 cut(s)	330
Bst1107I	GTATAC	1 cut(s)	330
Bst4CI	ACNGT	1 cut(s)	398
Bst6I	CTCTTC	3 cut(s)	61, 166, 372
BstAPI	GCANNNNNTGC	1 cut(s)	536
BstC8I	GCNNGC	2 cut(s)	355, 787
BstDEI	CTNAG	5 cut(s)	109, 190, 513, 573, 969
BstF5I	GGATG	4 cut(s)	606, 621, 784, 878
BstFNI	CGCG	2 cut(s)	187, 863
BstHHI	GCGC	2 cut(s)	189, 208
BstKTI	GATC	3 cut(s)	243, 571, 1002
BstMAI	GTCTC	4 cut(s)	112, 119, 1108, 1200
BstMBI	GATC	3 cut(s)	240, 568, 999
BstMWI	GCNNNNNNNGC	8 cut(s)	350, 359, 536, 545, 554, 860, 959, 1145
BstNSI	RCATGY	1 cut(s)	534
BstSCI	CCNGG	1 cut(s)	548
BstSLI	GKGCMC	2 cut(s)	396, 955
BstUI	CGCG	2 cut(s)	187, 863
BstV1I	GCAGC	3 cut(s)	29, 349, 949
BstX2I	RGATCY	2 cut(s)	568, 999
BstYI	RGATCY	2 cut(s)	568, 999
BstZ17I	GTATAC	1 cut(s)	330
Bsu36I	CCTNAGG	1 cut(s)	573
BsuRI	GGCC	1 cut(s)	48
BtsCI	GGATG	4 cut(s)	606, 621, 784, 878
BtsI	GCAGTG	3 cut(s)	357, 588, 663
BtsIMutI	CAGTG	4 cut(s)	134, 357, 588, 663
Cac8I	GCNNGC	2 cut(s)	355, 787
CciI	TCATGA	1 cut(s)	945
CfoI	GCGC	2 cut(s)	189, 208
Cfr13I	GGNCC	1 cut(s)	441
Csp6I	GTAC	2 cut(s)	289, 859
CviAII	CATG	8 cut(s)	14, 60, 92, 238, 531, 698, 946, 1066
CviJI	RGCY	9 cut(s)	20, 48, 248, 278, 307, 319, 353, 636, 962
CviKI_1	RGCY	9 cut(s)	20, 48, 248, 278, 307, 319, 353, 636, 962
CviQI	GTAC	2 cut(s)	289, 859
DdeI	CTNAG	5 cut(s)	109, 190, 513, 573, 969
DpnI	GATC	3 cut(s)	242, 570, 1001
DpnII	GATC	3 cut(s)	240, 568, 999
Eam1104I	CTCTTC	3 cut(s)	61, 166, 372
EarI	CTCTTC	3 cut(s)	61, 166, 372
Ecl136II	GAGCTC	1 cut(s)	248
Eco24I	GRGCYC	1 cut(s)	250
Eco31I	GGTCTC	1 cut(s)	119
Eco47I	GGWCC	1 cut(s)	441
Eco53kI	GAGCTC	1 cut(s)	248
Eco57I	CTGAAG	2 cut(s)	368, 1203
Eco81I	CCTNAGG	1 cut(s)	573
EcoICRI	GAGCTC	1 cut(s)	248
EcoRI	GAATTC	1 cut(s)	266
EcoT38I	GRGCYC	1 cut(s)	250
FaeI	CATG	8 cut(s)	17, 63, 95, 241, 534, 701, 949, 1069
FalI	AAGNNNNNCTT	2 cut(s)	317, 349
FaqI	GGGAC	3 cut(s)	61, 454, 856
FatI	CATG	8 cut(s)	13, 59, 91, 237, 530, 697, 945, 1065
FauI	CCCGC	1 cut(s)	847
FbaI	TGATCA	1 cut(s)	240
FblI	GTMKAC	1 cut(s)	329
Fnu4HI	GCNGC	3 cut(s)	18, 363, 963
FokI	GGATG	4 cut(s)	613, 628, 791, 885
FriOI	GRGCYC	1 cut(s)	250
Fsp4HI	GCNGC	3 cut(s)	18, 363, 963
FspBI	CTAG	3 cut(s)	308, 314, 663
FspI	TGCGCA	1 cut(s)	207
GlaI	GCGC	2 cut(s)	188, 207
GluI	GCNGC	3 cut(s)	18, 363, 963
HaeIII	GGCC	1 cut(s)	48
HapII	CCGG	1 cut(s)	549
HhaI	GCGC	2 cut(s)	189, 208
Hin1II	CATG	8 cut(s)	17, 63, 95, 241, 534, 701, 949, 1069
Hin6I	GCGC	2 cut(s)	187, 206
HinP1I	GCGC	2 cut(s)	187, 206
HinfI	GANTC	2 cut(s)	680, 1031
HpaII	CCGG	1 cut(s)	549
HphI	GGTGA	3 cut(s)	490, 634, 830
Hpy166II	GTNNAC	3 cut(s)	330, 394, 953
Hpy188I	TCNGA	4 cut(s)	245, 450, 730, 1036
Hpy188III	TCNNGA	7 cut(s)	281, 314, 663, 799, 946, 1181, 1205
Hpy8I	GTNNAC	3 cut(s)	330, 394, 953
HpyAV	CCTTC	5 cut(s)	138, 175, 343, 343, 1087
HpyCH4III	ACNGT	1 cut(s)	398
HpyF10VI	GCNNNNNNNGC	8 cut(s)	350, 359, 536, 545, 554, 860, 959, 1145
HpyF3I	CTNAG	5 cut(s)	109, 190, 513, 573, 969
Hsp92II	CATG	8 cut(s)	17, 63, 95, 241, 534, 701, 949, 1069
HspAI	GCGC	2 cut(s)	187, 206
Ksp22I	TGATCA	1 cut(s)	240
Kzo9I	GATC	3 cut(s)	240, 568, 999
Lsp1109I	GCAGC	3 cut(s)	29, 349, 949
LweI	GCATC	1 cut(s)	591
MaeI	CTAG	3 cut(s)	308, 314, 663
MalI	GATC	3 cut(s)	242, 570, 1001
MboI	GATC	3 cut(s)	240, 568, 999
MboII	GAAGA	3 cut(s)	48, 153, 389
MfeI	CAATTG	2 cut(s)	98, 1103
MflI	RGATCY	2 cut(s)	568, 999
MhlI	GDGCHC	3 cut(s)	250, 396, 955
MluCI	AATT	9 cut(s)	8, 28, 98, 151, 178, 199, 266, 625, 1103
MmeI	TCCRAC	1 cut(s)	142
MnlI	CCTC	9 cut(s)	373, 487, 559, 591, 708, 724, 877, 910, 987
MroXI	GAANNNNTTC	1 cut(s)	8
MseI	TTAA	2 cut(s)	302, 642
MslI	CAYNNNNRTG	2 cut(s)	702, 1008
MspI	CCGG	1 cut(s)	549
MspR9I	CCNGG	1 cut(s)	550
MunI	CAATTG	2 cut(s)	98, 1103
Mva1269I	GAATGC	1 cut(s)	513
MvnI	CGCG	2 cut(s)	187, 863
MwoI	GCNNNNNNNGC	8 cut(s)	350, 359, 536, 545, 554, 860, 959, 1145
NciI	CCSGG	1 cut(s)	550
NdeII	GATC	3 cut(s)	240, 568, 999
NlaIII	CATG	8 cut(s)	17, 63, 95, 241, 534, 701, 949, 1069
NlaIV	GGNNCC	3 cut(s)	442, 570, 651
NsbI	TGCGCA	1 cut(s)	207
NspI	RCATGY	1 cut(s)	534
PagI	TCATGA	1 cut(s)	945
PctI	GAATGC	1 cut(s)	513
PdmI	GAANNNNTTC	1 cut(s)	8
PfeI	GAWTC	2 cut(s)	680, 1031
PkrI	GCNGC	3 cut(s)	19, 364, 964
Psp124BI	GAGCTC	1 cut(s)	250
PspN4I	GGNNCC	3 cut(s)	442, 570, 651
PspPI	GGNCC	1 cut(s)	441
PsuI	RGATCY	2 cut(s)	568, 999
RsaI	GTAC	2 cut(s)	290, 860
RsaNI	GTAC	2 cut(s)	289, 859
RseI	CAYNNNNRTG	2 cut(s)	702, 1008
SacI	GAGCTC	1 cut(s)	250
SaqAI	TTAA	2 cut(s)	302, 642
SatI	GCNGC	3 cut(s)	18, 363, 963
Sau3AI	GATC	3 cut(s)	240, 568, 999
Sau96I	GGNCC	1 cut(s)	441
ScrFI	CCNGG	1 cut(s)	550
SduI	GDGCHC	3 cut(s)	250, 396, 955
SfaNI	GCATC	1 cut(s)	591
SinI	GGWCC	1 cut(s)	441
SmiMI	CAYNNNNRTG	2 cut(s)	702, 1008
SmlI	CTYRAG	1 cut(s)	279
SmoI	CTYRAG	1 cut(s)	279
Sse9I	AATT	9 cut(s)	8, 28, 98, 151, 178, 199, 266, 625, 1103
SsiI	CCGC	2 cut(s)	476, 854
SspMI	CTAG	3 cut(s)	308, 314, 663
SstI	GAGCTC	1 cut(s)	250
StyD4I	CCNGG	1 cut(s)	548
TaaI	ACNGT	1 cut(s)	398
TaqI	TCGA	3 cut(s)	798, 1029, 1204
TasI	AATT	9 cut(s)	8, 28, 98, 151, 178, 199, 266, 625, 1103
TfiI	GAWTC	2 cut(s)	680, 1031
Tru1I	TTAA	2 cut(s)	302, 642
Tru9I	TTAA	2 cut(s)	302, 642
TscAI	CASTG	4 cut(s)	141, 364, 588, 663
TseI	GCWGC	3 cut(s)	17, 362, 962
TspDTI	ATGAA	4 cut(s)	17, 48, 686, 944
TspRI	CASTG	4 cut(s)	141, 364, 588, 663
VneI	GTGCAC	2 cut(s)	392, 951
VpaK11BI	GGWCC	1 cut(s)	441
XapI	RAATTY	3 cut(s)	151, 266, 625
XbaI	TCTAGA	2 cut(s)	313, 662
XceI	RCATGY	1 cut(s)	534
XmiI	GTMKAC	1 cut(s)	329
XmnI	GAANNNNTTC	1 cut(s)	8
XspI	CTAG	3 cut(s)	308, 314, 663

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.