Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0011932

Physical Location & Seq

Genomic Coordinates Forward (+)

27315053 .. 27317737

Gene Structure 2685 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1193300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2685 bp

ATGATCGTGAAACATGGAGTTCGAACCAGACCATACCATGCACTCGCACCAGCAGCTTCCGAAATTCCTTCCTTGCCATCGACCACCAACAAGAATTACCGGCAGCACCACAGCCTCCTCTCTCAATGCGAAAGCTTGAAGTCTCTGCTGCAAATCCACGCCCACCTGATACTCTCAGGCTTCCAGCAAGACCATTCGACACTGACCAATCTCATAAATTCCTACTCTTCGTTCAAAAAATGCGGTTCTGCGCTCTCAGTTTTTTGTTCTGCGCAAAACCCAAGTGTGATTTTGTGGAACTCCATGATTCGAGCTTATACGAGAGCAAACAAGTACACGGAAGCTCGAAAAATGTACAATTCGATGGTGGAACAAGGCGTAGAGCCGGATAAGTATACCTTCAACTTTGTTTTGAAAGCTTGTACTGCTGCTTTGGATTTCGAAGATGGTGTCTTGGTGCACCGTGAAGTTGCTCGGAAGCGGCTGGACTCTGATGTGTTTATAGGGACCAGTCTCATTGACATGTACTGTAAAATGGGTGACTTAGAGAGTGCGCGAGAGGTGTTTGATAGATTGCCTAAGAGAGATGTTGTAGCTTGTAATGCCTTGATTGCGGGTTTATCGCAAAGTGAGGATCCTTGTGAGGCATTGGGGTTTTTCCGGAAGATGCAGACATGGGGGCTGAGGCCGAACTTGGTGAGCTTGGTCAATTTGGTTCCAGCAGTCTCTCGGTTGGCGGATATTGATTCTTGTAGGTGTATTCATGGTTATCTGTTCAGGAGGGATCTTAGTTCGGTGGTTTCTAATGGTTTGATTGATATGTACTCCAAGTGTGGAGATTTAGATGCTGCTCACCAGGTTTTTGACATGATGCAGGGCCGGGATGATGTTTCGTGGGGGACAATGATGGCAGGGTATGCGAGTAATGGATGTTTTGTTGAGGTTTTGGAGTTATTTGAGTGGATGAAAGGAGAGAATACTAAGATGAATAAGGTTTCAATCATAAGTGCTCTTTTGGCTGCTACTGAGATGAGAGATTTAGAGAAGGGGAACGTGATCCATTTTTGTGCCTCAGAACAAGAACTCGATGCTGATGTTTCGGTTGCTACTTCTATAATGACCATGTATGCAAAATGCGGAGAGATAGAGAAGGCTAAACAAATTTTTGAGGGACTAGGGAAAGGAGATTTAGTTTCTTGGGCTGCACTTTTATCTGCTTGCGTCCAATCTGGTTATCCTGAAGCAGCATTGTCTCTCTTTCGAGATGAGCAGAATGAAATTTTGAAACCAGGTGGAATAACACTGATAAGTGTCCTCTTGGCATGTGCAGAATTATCATATCTGAAGTTAGGTATGAGCATACATTGCTACGCCCTTAAGGCAAACATTGCTTCTGATATTTCTTTTGGAACAGCCCTAGTCTCCATGTATGCCAAATGTGGATTTTTTACTTCTGCATTAACTCTATTCAATAGAATGCCATGCAAAGATGTTGTGACATGGAATGCCTTGATAAATGCATACACCCAACTTGGAGACGCCTGCCATGCTATAGATATGTTTTGTGAATTATGGTCGTCTGGAATAATGCCTGATGCAGGAACCATGATGGGCATTATCTCCGCTTGTAGCATACTAACTGACCTAGATCAAGGTACCTGTATTCATGGACAAATTATAAAGAATGGGTGTGAGCATGATGTTGCTGTAAAAAATGCTCTTATTGGCATGTATTGCAAATGCGGTAACATACACTCAGCTCAACTTCTGTTTAACAGAACCAGATTTATGAAGGATGTGGTATCATGGAATGTAATGATTTCCGGATATGTGCAGGCTGGATATGCCAGGGAAGCTATATCTGCTTTTCACCAGATGAAATTGGAGAACTTTCAGCCTAATTTAGTCACATTTGTTAGTATCCTTCCGGCAGTAGCATATCTGGCAGCCCTAAGAGAGGGAATGGCTTTTCATTCTTGCATTATCCAAATGGGGTTTCTGTCCAACACACTTGTGGGAAATAGTCTTATCAATATGTATGCTAAATGTGGACAGCTCAATTATTCAGAGAAATGCTTTATTGAGATGGAGCACAAGGACAAAGTTTCATGGAATGCAATGCTTGCAGCATATGCAGTGCACGGGCAAGGAGTTGACGCAGTTGCACTTTTCTCACTGATGCAAGAGAGTTCTGTCCAAGTTGATTCTGTGTCATTCATCGGTGTTCTGTCCGCTTGCAGACATGCGGGTCTGGTACAAGAAGGAAGGAGTATTTTTCAGGTCATGCATGAAAAGCATCGTCTTGAACCAGAGTTGGAACATTATGCGTGCATGGTAGATCTTTTAGGTCGTGCTGGTTTATTCAATGAAGCTTTAAACTTAATTAATACAATGCCAATGGAGCCGGATGCTGGAGTCTGGGGAGCGTTATTAGGTGCGTGTAGGGTGCATTCTAATGTGAAGTTAGGAGAAATTGCATTGAGTCATCTTGTTAAGCTTGAGCCTAGAAATGCGGCGAATTACATAGTTTTATCTGATATACATGCTCATTCTGCTAGATGGGGTGATTCTGGCAAGACAAGATCAATGATGAGTGACTCGGGGTTGAAGAGAACACCAGGATGTAGTTGGGTAGAGGTTGAAAACAGGGTCCAGTCTTTTCTGGTGGGTGACTACAACTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

895

Amino Acids

98.62

Weight (kDa)

6.17

Isoelectric Point (pI)

39.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	94 - 141	1.7e-14	PPR repeat family
PPR_3	PF13812	94 - 141	6e-06	Pentatricopeptide repeat domain
PPR	PF01535	98 - 127	1e-06	PPR repeat
PPR_2	PF13041	195 - 234	6.8e-07	PPR repeat family
PPR_2	PF13041	496 - 543	8.8e-08	PPR repeat family
PPR_2	PF13041	598 - 642	2.9e-11	PPR repeat family
PPR	PF01535	601 - 630	2.9e-07	PPR repeat
PPR_2	PF13041	700 - 746	5.4e-07	PPR repeat family
E_motif	PF20431	817 - 879	4.4e-17	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011932)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39620 AT2G40720
fragaria_vesca	FvH4_7g21891
malus_domestica	MD07G1193300.v1.1
prunus_persica	Prupe.2G231000_v2.0.a1
pyrus_communis	pycom07g18250
rosa_chinensis	RchiOBHm_Chr1g0366141
rosa_laevigata	RLG00000027363
rosa_multiflora	Rmu_co8484073.1_g000001 Rmu_sc0003987.1_g000001
rosa_roxburghii	Rroxscaffold_4G00290450 Rroxscaffold_4G00290460
rosa_rugosa	Rorug01G0327800 Rorug01G0327900
rosa_samantha	Rh1AG335900 Rh1BG297300 Rh1CG313300 Rh1DG329100
rosa_wichuraiana	Rw1G029800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1679
AasI	GACNNNNNNGTC	1 cut(s)	2247
Acc16I	TGCGCA	1 cut(s)	273
Acc65I	GGTACC	1 cut(s)	1655
AccB1I	GGYRCC	1 cut(s)	1655
AccI	GTMKAC	1 cut(s)	395
AccII	CGCG	1 cut(s)	556
AccIII	TCCGGA	2 cut(s)	660, 1823
AclWI	GGATC	4 cut(s)	629, 642, 792, 1051
AcsI	RAATTY	4 cut(s)	63, 217, 1161, 1278
AcuI	CTGAAG	2 cut(s)	1260, 1364
AcyI	GRCGYC	1 cut(s)	1539
AfaI	GTAC	7 cut(s)	335, 356, 424, 527, 824, 1657, 2256
AfiI	CCNNNNNNNGG	3 cut(s)	1598, 1957, 2411
AflII	CTTAAG	1 cut(s)	1376
AflIII	ACRYGT	1 cut(s)	522
AjnI	CCWGG	4 cut(s)	855, 1288, 1847, 2617
AjuI	GAANNNNNNNTTGG	2 cut(s)	1980, 2012
AleI	CACNNNNGTG	1 cut(s)	2012
Alw21I	GWGCWC	4 cut(s)	462, 1012, 2094, 2142
Alw26I	GTCTC	6 cut(s)	147, 518, 730, 1257, 1426, 1530
Alw44I	GTGCAC	2 cut(s)	458, 2138
AlwI	GGATC	4 cut(s)	629, 642, 792, 1051
Ama87I	CYCGRG	1 cut(s)	2599
Aor13HI	TCCGGA	2 cut(s)	660, 1823
AoxI	GGCC	2 cut(s)	686, 877
ApaLI	GTGCAC	2 cut(s)	458, 2138
ApoI	RAATTY	4 cut(s)	63, 217, 1161, 1278
ArsI	GACNNNNNNTTYG	2 cut(s)	435, 467
AseI	ATTAAT	1 cut(s)	2385
Asp718I	GGTACC	1 cut(s)	1655
AspLEI	GCGC	3 cut(s)	253, 274, 556
AspS9I	GGNCC	3 cut(s)	507, 877, 2650
AsuC2I	CCSGG	1 cut(s)	881
AsuHPI	GGTGA	6 cut(s)	551, 709, 845, 1862, 2576, 2681
AsuII	TTCGAA	2 cut(s)	22, 441
AvaI	CYCGRG	1 cut(s)	2599
AvaII	GGWCC	2 cut(s)	507, 2650
BaeGI	GKGCMC	2 cut(s)	462, 2142
BamHI	GGATCC	1 cut(s)	634
BanI	GGYRCC	1 cut(s)	1655
Bbv12I	GWGCWC	4 cut(s)	462, 1012, 2094, 2142
BbvCI	CCTCAGC	1 cut(s)	683
BccI	CCATC	7 cut(s)	85, 358, 440, 901, 1603, 2080, 2553
BciT130I	CCWGG	4 cut(s)	857, 1290, 1849, 2619
BciVI	GTATCC	1 cut(s)	1931
BcnI	CCSGG	1 cut(s)	881
BcoDI	GTCTC	6 cut(s)	147, 518, 730, 1257, 1426, 1530
BfaI	CTAG	6 cut(s)	1175, 1418, 1646, 2505, 2556, 2683
BfmI	CTRYAG	1 cut(s)	1551
BfrI	CTTAAG	1 cut(s)	1376
BfuI	GTATCC	1 cut(s)	1931
BglI	GCCNNNNNGGC	1 cut(s)	1379
BglII	AGATCT	1 cut(s)	2338
Bme1390I	CCNGG	5 cut(s)	857, 881, 1290, 1849, 2619
Bme18I	GGWCC	2 cut(s)	507, 2650
BmeT110I	CYCGRG	1 cut(s)	2599
BmgT120I	GGNCC	3 cut(s)	507, 877, 2650
BmiI	GGNNCC	7 cut(s)	508, 636, 717, 1603, 1657, 2403, 2651
BmrFI	CCNGG	5 cut(s)	857, 881, 1290, 1849, 2619
BmsI	GCATC	8 cut(s)	657, 835, 861, 1078, 1585, 2169, 2305, 2398
BpmI	CTGGAG	1 cut(s)	2433
Bpu10I	CCTNAGC	1 cut(s)	683
Bpu14I	TTCGAA	2 cut(s)	22, 441
BpuEI	CTTGAG	1 cut(s)	2519
BpuMI	CCSGG	1 cut(s)	881
BsaHI	GRCGYC	1 cut(s)	1539
BsaJI	CCNNGG	1 cut(s)	1848
BsaWI	WCCGGW	2 cut(s)	660, 1823
BsaXI	ACNNNNNCTCC	2 cut(s)	1176, 1206
Bsc4I	CCNNNNNNNGG	3 cut(s)	1598, 1957, 2411
Bse118I	RCCGGY	1 cut(s)	99
Bse1I	ACTGG	2 cut(s)	510, 2653
Bse3DI	GCAATG	3 cut(s)	1363, 1386, 2124
BseAI	TCCGGA	2 cut(s)	660, 1823
BseBI	CCWGG	4 cut(s)	857, 1290, 1849, 2619
BseDI	CCNNGG	1 cut(s)	1848
BseGI	GGATG	6 cut(s)	889, 935, 969, 1801, 2413, 2627
BseLI	CCNNNNNNNGG	3 cut(s)	1598, 1957, 2411
BseMI	GCAATG	3 cut(s)	1363, 1386, 2124
BseMII	CTCAG	6 cut(s)	189, 270, 674, 1017, 1086, 1770
BseNI	ACTGG	2 cut(s)	510, 2653
BseRI	GAGGAG	1 cut(s)	107
BseSI	GKGCMC	2 cut(s)	462, 2142
BsgI	GTGCAG	3 cut(s)	1188, 1347, 1853
Bsh1236I	CGCG	1 cut(s)	556
BshFI	GGCC	2 cut(s)	688, 879
BshNI	GGYRCC	1 cut(s)	1655
BsiHKAI	GWGCWC	4 cut(s)	462, 1012, 2094, 2142
BsiHKCI	CYCGRG	1 cut(s)	2599
BsiSI	CCGG	7 cut(s)	100, 386, 661, 880, 1824, 1928, 2405
BslFI	GGGAC	3 cut(s)	520, 913, 1185
BslI	CCNNNNNNNGG	3 cut(s)	1598, 1957, 2411
BsmAI	GTCTC	6 cut(s)	147, 518, 730, 1257, 1426, 1530
BsmBI	CGTCTC	1 cut(s)	1530
BsmFI	GGGAC	3 cut(s)	520, 913, 1185
BsmI	GAATGC	4 cut(s)	1482, 1510, 2119, 2449
BsnI	GGCC	2 cut(s)	688, 879
BsoBI	CYCGRG	1 cut(s)	2599
Bsp119I	TTCGAA	2 cut(s)	22, 441
Bsp1286I	GDGCHC	4 cut(s)	462, 1012, 2094, 2142
Bsp13I	TCCGGA	2 cut(s)	660, 1823
Bsp1407I	TGTACA	1 cut(s)	354
Bsp143I	GATC	7 cut(s)	3, 634, 784, 1056, 1648, 2338, 2582
BspANI	GGCC	2 cut(s)	688, 879
BspCNI	CTCAG	6 cut(s)	188, 269, 675, 1018, 1085, 1769
BspEI	TCCGGA	2 cut(s)	660, 1823
BspFNI	CGCG	1 cut(s)	556
BspLI	GGNNCC	7 cut(s)	508, 636, 717, 1603, 1657, 2403, 2651
BspPI	GGATC	4 cut(s)	629, 642, 792, 1051
BspT104I	TTCGAA	2 cut(s)	22, 441
BspT107I	GGYRCC	1 cut(s)	1655
BspTI	CTTAAG	1 cut(s)	1376
BsrDI	GCAATG	3 cut(s)	1363, 1386, 2124
BsrFI	RCCGGY	1 cut(s)	99
BsrGI	TGTACA	1 cut(s)	354
BsrI	ACTGG	2 cut(s)	510, 2653
BssAI	RCCGGY	1 cut(s)	99
BssECI	CCNNGG	1 cut(s)	1848
BssMI	GATC	7 cut(s)	3, 634, 784, 1056, 1648, 2338, 2582
BssNAI	GTATAC	1 cut(s)	396
BssNI	GRCGYC	1 cut(s)	1539
Bst1107I	GTATAC	1 cut(s)	396
Bst2UI	CCWGG	4 cut(s)	857, 1290, 1849, 2619
Bst4CI	ACNGT	2 cut(s)	464, 530
Bst6I	CTCTTC	2 cut(s)	232, 2603
BstACI	GRCGYC	1 cut(s)	1539
BstAFI	CTTAAG	1 cut(s)	1376
BstAPI	GCANNNNNTGC	6 cut(s)	917, 1365, 1388, 1734, 2123, 2132
BstAUI	TGTACA	1 cut(s)	354
BstBI	TTCGAA	2 cut(s)	22, 441
BstC8I	GCNNGC	6 cut(s)	1219, 1543, 1836, 2124, 2236, 2329
BstENI	CCTNNNNNAGG	2 cut(s)	1596, 1955
BstF5I	GGATG	6 cut(s)	889, 935, 969, 1801, 2413, 2627
BstFNI	CGCG	1 cut(s)	556
BstHHI	GCGC	3 cut(s)	253, 274, 556
BstKTI	GATC	7 cut(s)	6, 637, 787, 1059, 1651, 2341, 2585
BstMAI	GTCTC	6 cut(s)	147, 518, 730, 1257, 1426, 1530
BstMBI	GATC	7 cut(s)	3, 634, 784, 1056, 1648, 2338, 2582
BstNI	CCWGG	4 cut(s)	857, 1290, 1849, 2619
BstNSI	RCATGY	5 cut(s)	526, 1326, 1732, 2246, 2546
BstSCI	CCNGG	5 cut(s)	855, 879, 1288, 1847, 2617
BstSFI	CTRYAG	1 cut(s)	1551
BstSLI	GKGCMC	2 cut(s)	462, 2142
BstUI	CGCG	1 cut(s)	556
BstX2I	RGATCY	3 cut(s)	634, 784, 2338
BstYI	RGATCY	3 cut(s)	634, 784, 2338
BstZ17I	GTATAC	1 cut(s)	396
BsuI	GTATCC	1 cut(s)	1931
BsuRI	GGCC	2 cut(s)	688, 879
BtsCI	GGATG	6 cut(s)	889, 935, 969, 1801, 2413, 2627
BtsI	GCAGTG	1 cut(s)	2142
BtsIMutI	CAGTG	4 cut(s)	200, 1301, 2142, 2174
Cac8I	GCNNGC	6 cut(s)	1219, 1543, 1836, 2124, 2236, 2329
CfoI	GCGC	3 cut(s)	253, 274, 556
Cfr10I	RCCGGY	1 cut(s)	99
Cfr13I	GGNCC	3 cut(s)	507, 877, 2650
CseI	GACGC	3 cut(s)	1210, 1547, 2165
CsiI	ACCWGGT	2 cut(s)	855, 1288
Csp6I	GTAC	7 cut(s)	334, 355, 423, 526, 823, 1656, 2255
CviQI	GTAC	7 cut(s)	334, 355, 423, 526, 823, 1656, 2255
DpnI	GATC	7 cut(s)	5, 636, 786, 1058, 1650, 2340, 2584
DpnII	GATC	7 cut(s)	3, 634, 784, 1056, 1648, 2338, 2582
DraI	TTTAAA	1 cut(s)	2376
DrdI	GACNNNNNNGTC	1 cut(s)	2247
DseDI	GACNNNNNNGTC	1 cut(s)	2247
Eam1104I	CTCTTC	2 cut(s)	232, 2603
EarI	CTCTTC	2 cut(s)	232, 2603
EciI	GGCGGA	1 cut(s)	752
Eco47I	GGWCC	2 cut(s)	507, 2650
Eco57I	CTGAAG	2 cut(s)	1260, 1364
Eco88I	CYCGRG	1 cut(s)	2599
EcoNI	CCTNNNNNAGG	2 cut(s)	1596, 1955
EcoRII	CCWGG	4 cut(s)	855, 1288, 1847, 2617
EcoT22I	ATGCAT	2 cut(s)	1522, 2289
Esp3I	CGTCTC	1 cut(s)	1530
FalI	AAGNNNNNCTT	2 cut(s)	383, 415
FaqI	GGGAC	3 cut(s)	520, 913, 1185
FauI	CCCGC	2 cut(s)	607, 2239
FauNDI	CATATG	1 cut(s)	2131
FblI	GTMKAC	1 cut(s)	395
FokI	GGATG	6 cut(s)	896, 942, 976, 1808, 2420, 2634
FspBI	CTAG	6 cut(s)	1175, 1418, 1646, 2505, 2556, 2683
FspI	TGCGCA	1 cut(s)	273
GlaI	GCGC	3 cut(s)	252, 273, 555
GsuI	CTGGAG	1 cut(s)	2433
HaeIII	GGCC	2 cut(s)	688, 879
HapII	CCGG	7 cut(s)	100, 386, 661, 880, 1824, 1928, 2405
HgaI	GACGC	3 cut(s)	1210, 1547, 2165
HhaI	GCGC	3 cut(s)	253, 274, 556
Hin1I	GRCGYC	1 cut(s)	1539
Hin6I	GCGC	3 cut(s)	251, 272, 554
HinP1I	GCGC	3 cut(s)	251, 272, 554
HincII	GTYRAC	1 cut(s)	2155
HindII	GTYRAC	1 cut(s)	2155
HindIII	AAGCTT	4 cut(s)	133, 417, 2370, 2495
HinfI	GANTC	8 cut(s)	307, 488, 746, 2204, 2415, 2482, 2567, 2597
HpaII	CCGG	7 cut(s)	100, 386, 661, 880, 1824, 1928, 2405
HphI	GGTGA	6 cut(s)	551, 709, 845, 1862, 2576, 2681
Hpy166II	GTNNAC	6 cut(s)	336, 396, 460, 2051, 2140, 2155
Hpy188I	TCNGA	8 cut(s)	61, 477, 493, 1075, 1344, 1396, 2068, 2536
Hpy188III	TCNNGA	8 cut(s)	7, 661, 778, 1238, 1262, 1581, 1824, 2303
Hpy8I	GTNNAC	6 cut(s)	336, 396, 460, 2051, 2140, 2155
HpyAV	CCTTC	8 cut(s)	78, 409, 1039, 1144, 1786, 1934, 2255, 2259
HpyCH4III	ACNGT	2 cut(s)	464, 530
HpyCH4IV	ACGT	1 cut(s)	1053
HpySE526I	ACGT	1 cut(s)	1053
Hsp92I	GRCGYC	1 cut(s)	1539
HspAI	GCGC	3 cut(s)	251, 272, 554
Kpn2I	TCCGGA	2 cut(s)	660, 1823
KpnI	GGTACC	1 cut(s)	1659
Kzo9I	GATC	7 cut(s)	3, 634, 784, 1056, 1648, 2338, 2582
LmnI	GCTCC	3 cut(s)	2089, 2401, 2423
LweI	GCATC	8 cut(s)	657, 835, 861, 1078, 1585, 2169, 2305, 2398
MabI	ACCWGGT	2 cut(s)	855, 1288
MaeI	CTAG	6 cut(s)	1175, 1418, 1646, 2505, 2556, 2683
MaeII	ACGT	1 cut(s)	1053
MaeIII	GTNAC	6 cut(s)	539, 1495, 1745, 1906, 2594, 2669
MalI	GATC	7 cut(s)	5, 636, 786, 1058, 1650, 2340, 2584
MboI	GATC	7 cut(s)	3, 634, 784, 1056, 1648, 2338, 2582
MboII	GAAGA	4 cut(s)	219, 455, 676, 2620
MflI	RGATCY	3 cut(s)	634, 784, 2338
MhlI	GDGCHC	4 cut(s)	462, 1012, 2094, 2142
MlyI	GAGTC	4 cut(s)	482, 2424, 2491, 2591
MmeI	TCCRAC	2 cut(s)	2028, 2295
Mph1103I	ATGCAT	2 cut(s)	1522, 2289
MroI	TCCGGA	2 cut(s)	660, 1823
MseI	TTAA	7 cut(s)	1377, 1460, 1773, 2375, 2381, 2385, 2493
MslI	CAYNNNNRTG	5 cut(s)	521, 1065, 2012, 2454, 2620
MspCI	CTTAAG	1 cut(s)	1376
MspI	CCGG	7 cut(s)	100, 386, 661, 880, 1824, 1928, 2405
MspR9I	CCNGG	5 cut(s)	857, 881, 1290, 1849, 2619
Mva1269I	GAATGC	4 cut(s)	1482, 1510, 2119, 2449
MvaI	CCWGG	4 cut(s)	857, 1290, 1849, 2619
MvnI	CGCG	1 cut(s)	556
NciI	CCSGG	1 cut(s)	881
NdeI	CATATG	1 cut(s)	2131
NdeII	GATC	7 cut(s)	3, 634, 784, 1056, 1648, 2338, 2582
NlaIV	GGNNCC	7 cut(s)	508, 636, 717, 1603, 1657, 2403, 2651
NmuCI	GTSAC	5 cut(s)	539, 1495, 1906, 2594, 2669
NsbI	TGCGCA	1 cut(s)	273
NsiI	ATGCAT	2 cut(s)	1522, 2289
NspI	RCATGY	5 cut(s)	526, 1326, 1732, 2246, 2546
NspV	TTCGAA	2 cut(s)	22, 441
OliI	CACNNNNGTG	1 cut(s)	2012
PacI	TTAATTAA	1 cut(s)	2385
PciI	ACATGT	1 cut(s)	522
PctI	GAATGC	4 cut(s)	1482, 1510, 2119, 2449
PfeI	GAWTC	4 cut(s)	307, 746, 2204, 2567
PleI	GAGTC	4 cut(s)	482, 2423, 2490, 2591
PpsI	GAGTC	4 cut(s)	482, 2423, 2490, 2591
PscI	ACATGT	1 cut(s)	522
PshBI	ATTAAT	1 cut(s)	2385
PsiI	TTATAA	1 cut(s)	1679
Psp6I	CCWGG	4 cut(s)	855, 1288, 1847, 2617
PspGI	CCWGG	4 cut(s)	855, 1288, 1847, 2617
PspN4I	GGNNCC	7 cut(s)	508, 636, 717, 1603, 1657, 2403, 2651
PspPI	GGNCC	3 cut(s)	507, 877, 2650
PsuI	RGATCY	3 cut(s)	634, 784, 2338
RsaI	GTAC	7 cut(s)	335, 356, 424, 527, 824, 1657, 2256
RsaNI	GTAC	7 cut(s)	334, 355, 423, 526, 823, 1656, 2255
RseI	CAYNNNNRTG	5 cut(s)	521, 1065, 2012, 2454, 2620
SaqAI	TTAA	7 cut(s)	1377, 1460, 1773, 2375, 2381, 2385, 2493
Sau3AI	GATC	7 cut(s)	3, 634, 784, 1056, 1648, 2338, 2582
Sau96I	GGNCC	3 cut(s)	507, 877, 2650
SchI	GAGTC	4 cut(s)	482, 2424, 2491, 2591
ScrFI	CCNGG	5 cut(s)	857, 881, 1290, 1849, 2619
SduI	GDGCHC	4 cut(s)	462, 1012, 2094, 2142
SexAI	ACCWGGT	2 cut(s)	855, 1288
SfaNI	GCATC	8 cut(s)	657, 835, 861, 1078, 1585, 2169, 2305, 2398
SfcI	CTRYAG	1 cut(s)	1551
SfuI	TTCGAA	2 cut(s)	22, 441
SinI	GGWCC	2 cut(s)	507, 2650
SmiMI	CAYNNNNRTG	5 cut(s)	521, 1065, 2012, 2454, 2620
SmlI	CTYRAG	2 cut(s)	1376, 2498
SmoI	CTYRAG	2 cut(s)	1376, 2498
SspMI	CTAG	6 cut(s)	1175, 1418, 1646, 2505, 2556, 2683
StyD4I	CCNGG	5 cut(s)	855, 879, 1288, 1847, 2617
TaaI	ACNGT	2 cut(s)	464, 530
TaiI	ACGT	1 cut(s)	1056
TaqI	TCGA	9 cut(s)	22, 80, 197, 310, 346, 362, 441, 1086, 1261
TatI	WGTACW	5 cut(s)	333, 354, 422, 525, 822
TauI	GCSGC	2 cut(s)	484, 2516
TfiI	GAWTC	4 cut(s)	307, 746, 2204, 2567
Tru1I	TTAA	7 cut(s)	1377, 1460, 1773, 2375, 2381, 2385, 2493
Tru9I	TTAA	7 cut(s)	1377, 1460, 1773, 2375, 2381, 2385, 2493
TscAI	CASTG	4 cut(s)	207, 1308, 2142, 2181
TseFI	GTSAC	5 cut(s)	539, 1495, 1906, 2594, 2669
Tsp45I	GTSAC	5 cut(s)	539, 1495, 1906, 2594, 2669
TspGWI	ACGGA	1 cut(s)	353
TspRI	CASTG	4 cut(s)	207, 1308, 2142, 2181
Vha464I	CTTAAG	1 cut(s)	1376
VneI	GTGCAC	2 cut(s)	458, 2138
VpaK11BI	GGWCC	2 cut(s)	507, 2650
VspI	ATTAAT	1 cut(s)	2385
XagI	CCTNNNNNAGG	2 cut(s)	1596, 1955
XapI	RAATTY	4 cut(s)	63, 217, 1161, 1278
XceI	RCATGY	5 cut(s)	526, 1326, 1732, 2246, 2546
XcmI	CCANNNNNNNNNTGG	2 cut(s)	2011, 2625
XmiI	GTMKAC	1 cut(s)	395
XspI	CTAG	6 cut(s)	1175, 1418, 1646, 2505, 2556, 2683
Zsp2I	ATGCAT	2 cut(s)	1522, 2289

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.