Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0011932

Physical Location & Seq

Genomic Coordinates Forward (+)

58748968 .. 58753180

Gene Structure 4213 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG313300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2412 bp

ATGATCAGAGCTCATACCAGAGCAAAAGAATTCAAACAAGCTCAAGAAATGTACCATTCTTTGTTAAGGCAAGGTCTAGAGCCAGACAAGTATACCTTCAACTTTGCCCTGAAGGCTTGCACTGCTGCATTGGATTTTGAAGAGGGTGTATTGGTGCACCGTGAAGTAGAGCGTAAAGGGTTAGAGTATGATGTGTTTATTGGGACCAGTCTGATTGATATGTATTGTAAAATGGGGGAGGTGAAATGTGCAGGAGAGGTGTTTGATAGAATGCCTGAGAAAGATGTTGTGGCATGTAATGCTTTGATTGCCGGGTTAGCGAAAAGCGAGGATCCTAATGAAGCAGTGGAGTTTTTTAGGAGGATGCAATGTTGGGGGATGGGGGTGAATTTAGTGAGCTTGTTTAACTTGGTTCCAGCAGTGTCTAGATTGGGAGATATTGATTCTTGTAGGTGTATTCATGGGTATGTGGTTAGGAGGGAGTTGGGTTCAGAGGTTTCGAATGGGTTGGTTGATATGTATTGCAAGTGTGGAGATGTGGATGTTGCTTGCAGAGTTTTCGAGATGGTGCAGGGTGGTGATGATGATGGTGGTGTTTTGTGGGGGACAATGATGGCGGGGTACGCGAGTAATGGATGTTTTGTTGAGGTTTTGGAGTTGTTTGATTGCTTGAAAGGGGAGGGGAGTAGAATGAATAAGGTTTGTATCATGAGTGCACTTTTGGCTGCTACTGAGATGAGAGATTTGGAGAAAGGGAGGGAGATCCATCTTTGTGCTTTAGAAGTAGAAGTCGATTCTGATGTTTCGGTTGCTACTTCTATAATGACCATGTATGCAAAATGTGGAGAAATAGAGAAGGCAATGCAATTGTTTGAGAGACTTGGGGAAAGAGATTTAGTTGCTTGGTCTGCACTTATATCTGCTTGCGTTCAGTCTGGTTATCCTGAAGTGGCATTGTCTCTCTTTCGAGATAGGCAGAATGAAAATCTCAAACCATGTGGCATAACATTGGTCAGCATCCTTGCTGCATGTGGGGAGCTTTCATATCTGAAATTTGGTAAGAGCATACATTGCTATGTTGTTAAGGCCGATATTGATTCTGATATTTCTACTGGGACTGCCCTAGTCTCCATGTATGCTAAATGTGGATTCTTTACTCCTGCCTCGATTATATTCAACAGAATGCCATCTAAAGATGTTGTGACGTGGAATGCACTTATAAATGCATATACCCAAATAGGTGATGTCTACCATGCTATTGATATGTTGGATGAGTTATGGTTGTCTGGAATAAAACCTGATGCAGGAACAATGGTGGGTATGGTCTCGGCTTGTAGCTTATTAAATGATCTAAATCATGGTACTTGTATTCATGGACGAATTATAAAGAATGGGTTTGAACATGATGCACCTTTGAAAAATGCTCTTATTGGCATGTATTGCAAATGTGGTGACATTTCGTCAGCTGAATTTCTATTTAATAGAACAAAATTAATGAAAGATGTGGTATCCTGGAATGTAATGATTGCAGGATACATGCAGGGTGGATATGCCAGGGAAGCTATATCTGTGTTTCACCAGATGAAATTAGAGAACTGTCAGCCTAATTTAGTCACATTTGTTAGCATCCTTCCTGCAGTGGCATATCTAGCAGCATTACGAGAGGGCATGGCTTTTCATGCCTGCATTATCCAGAATGGGTTTCTATCTAATACACTTGTGGGAAATAGTCTTATTGACATGTATGCTAAATGCGGACAGCTCGATCATTCAGAAAAATGCTTTGAAGAGATGGAACTCAAGGACAAAGTTTCGTGGAACGCAATGCTTGCAGCGTATGCAATGCACGGACAAGGGGATCATGCTATTGCACTTTTATCGCTGATGCAAAAGAGCTGTATCCAACTTGATTCTGTGTCATTCATCAGTCTCTTGTCTGCCTGCAGACATGCGGGTTTGATAAAAGAAGGAAAGGAAGTTTTTCAGGTCATGTGTGAAAAGCACCATCTTGAACCAGAGTTGGAACATTATGCTTGCATGGTAGATCTTCTAGGCCGTGCTGGTTTCTTTGATGAAGCTTTAGATTTGATTAATACGATGCCCATGGAGCCTGATGGCGGAGTCTGGGGAGCATTATTAGGGGCATGCAGGATGCATTCAAATGCAAAGTTGGGAGAAGTTGCGTTGAGTCATCTTGTTAACCTTGAGCCTACAAATGCAACCAATTACATAACTTTATCAGATATACATGCACATTCTGCTAGATGGGGTGATGCTTGCAAGACAAGATCAAAGATGAAGAGCTCTGGGTCGAAGAAAATGCCAGGATGTAGTTGGGTAGAGGTCCAAAACAGGGTTCATACGCTACAGGCGGGTGACTACAACTACCGCCAACTTGGAACAGAGAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

803

Amino Acids

88.63

Weight (kDa)

5.46

Isoelectric Point (pI)

36.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	1 - 40	8.7e-06	PPR repeat family
PPR_1	PF12854	59 - 91	4e-06	PPR repeat
PPR_2	PF13041	94 - 131	5.9e-07	PPR repeat family
PPR_2	PF13041	398 - 445	2.5e-08	PPR repeat family
PPR_3	PF13812	497 - 546	2e-06	Pentatricopeptide repeat domain
PPR_2	PF13041	500 - 544	3.9e-12	PPR repeat family
PPR	PF01535	503 - 533	6.3e-07	PPR repeat
PPR_2	PF13041	602 - 648	8.2e-08	PPR repeat family
E_motif	PF20431	719 - 781	4.5e-19	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011932)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39620 AT2G40720
fragaria_vesca	FvH4_7g21891
malus_domestica	MD07G1193300.v1.1
prunus_persica	Prupe.2G231000_v2.0.a1
pyrus_communis	pycom07g18250
rosa_chinensis	RchiOBHm_Chr1g0366141
rosa_laevigata	RLG00000027363
rosa_multiflora	Rmu_co8484073.1_g000001 Rmu_sc0003987.1_g000001
rosa_roxburghii	Rroxscaffold_4G00290450 Rroxscaffold_4G00290460
rosa_rugosa	Rorug01G0327800 Rorug01G0327900
rosa_samantha	Rh1AG335900 Rh1BG297300 Rh1CG313300 Rh1DG329100
rosa_wichuraiana	Rw1G029800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1220, 1385
AccI	GTMKAC	2 cut(s)	92, 1248
AccII	CGCG	1 cut(s)	626
AciI	CCGC	6 cut(s)	617, 1755, 1952, 2118, 2372, 2389
AclWI	GGATC	4 cut(s)	326, 339, 757, 1866
AcsI	RAATTY	4 cut(s)	29, 388, 1052, 1469
AcuI	CTGAAG	2 cut(s)	131, 966
AfaI	GTAC	3 cut(s)	53, 623, 1363
AfiI	CCNNNNNNNGG	3 cut(s)	1304, 2117, 2353
AflIII	ACRYGT	1 cut(s)	1740
AhdI	GACNNNNNGTC	1 cut(s)	1459
AjiI	CACGTC	1 cut(s)	1206
AjnI	CCWGG	3 cut(s)	1511, 1553, 2323
AjuI	GAANNNNNNNTTGG	2 cut(s)	2340, 2372
Alw21I	GWGCWC	4 cut(s)	13, 159, 718, 2306
Alw26I	GTCTC	5 cut(s)	871, 963, 1132, 1330, 1934
Alw44I	GTGCAC	2 cut(s)	155, 714
AlwI	GGATC	4 cut(s)	326, 339, 757, 1866
AoxI	GGCC	2 cut(s)	1086, 2053
ApaLI	GTGCAC	2 cut(s)	155, 714
ApeKI	GCWGC	5 cut(s)	125, 725, 1025, 1652, 1832
ApoI	RAATTY	4 cut(s)	29, 388, 1052, 1469
AseI	ATTAAT	2 cut(s)	1493, 2091
Asp700I	GAANNNNTTC	1 cut(s)	1980
AspS9I	GGNCC	2 cut(s)	204, 2344
AsuC2I	CCSGG	1 cut(s)	313
AsuHPI	GGTGA	8 cut(s)	253, 397, 590, 1253, 1463, 1568, 2282, 2387
AsuII	TTCGAA	1 cut(s)	500
AvaII	GGWCC	2 cut(s)	204, 2344
BaeGI	GKGCMC	2 cut(s)	159, 718
BaeI	ACNNNNGTAYC	2 cut(s)	613, 646
BamHI	GGATCC	1 cut(s)	331
BanII	GRGCYC	2 cut(s)	13, 2306
Bbv12I	GWGCWC	4 cut(s)	13, 159, 718, 2306
BbvI	GCAGC	5 cut(s)	112, 712, 1012, 1664, 1844
BceAI	ACGGC	1 cut(s)	2040
BcgI	CGANNNNNNTGC	6 cut(s)	541, 575, 1860, 1894, 2302, 2336
BciT130I	CCWGG	3 cut(s)	1513, 1555, 2325
BciVI	GTATCC	3 cut(s)	1519, 1526, 1910
BclI	TGATCA	1 cut(s)	3
BcnI	CCSGG	1 cut(s)	313
BcoDI	GTCTC	5 cut(s)	871, 963, 1132, 1330, 1934
BfaI	CTAG	6 cut(s)	77, 426, 1124, 1649, 2051, 2262
BfmI	CTRYAG	3 cut(s)	1635, 1942, 2366
BfuI	GTATCC	3 cut(s)	1519, 1526, 1910
BglI	GCCNNNNNGGC	1 cut(s)	113
BglII	AGATCT	1 cut(s)	2044
BisI	GCNGC	5 cut(s)	126, 726, 1026, 1653, 1833
BlsI	GCNGC	5 cut(s)	127, 727, 1027, 1654, 1834
Bme1390I	CCNGG	4 cut(s)	313, 1513, 1555, 2325
Bme18I	GGWCC	2 cut(s)	204, 2344
BmeRI	GACNNNNNGTC	1 cut(s)	1459
BmgBI	CACGTC	1 cut(s)	1206
BmgT120I	GGNCC	2 cut(s)	204, 2344
BmiI	GGNNCC	4 cut(s)	205, 333, 414, 2109
BmrFI	CCNGG	4 cut(s)	313, 1513, 1555, 2325
BmrI	ACTGGG	1 cut(s)	1122
BmsI	GCATC	9 cut(s)	354, 1026, 1291, 1396, 1635, 1875, 2088, 2142, 2263
BmuI	ACTGGG	1 cut(s)	1122
Bpu14I	TTCGAA	1 cut(s)	500
BpuEI	CTTGAG	3 cut(s)	27, 1784, 2225
BpuMI	CCSGG	1 cut(s)	313
BsaBI	GATNNNNATC	1 cut(s)	1353
BsaI	GGTCTC	1 cut(s)	1330
BsaJI	CCNNGG	2 cut(s)	1554, 2103
Bsc4I	CCNNNNNNNGG	3 cut(s)	1304, 2117, 2353
Bse1I	ACTGG	2 cut(s)	207, 1117
Bse3DI	GCAATG	5 cut(s)	374, 867, 1069, 1830, 1848
Bse8I	GATNNNNATC	1 cut(s)	1353
BseBI	CCWGG	3 cut(s)	1513, 1555, 2325
BseDI	CCNNGG	2 cut(s)	1554, 2103
BseGI	GGATG	9 cut(s)	369, 384, 547, 641, 1017, 1276, 1626, 2157, 2333
BseJI	GATNNNNATC	1 cut(s)	1353
BseLI	CCNNNNNNNGG	3 cut(s)	1304, 2117, 2353
BseMI	GCAATG	5 cut(s)	374, 867, 1069, 1830, 1848
BseMII	CTCAG	2 cut(s)	267, 723
BseNI	ACTGG	2 cut(s)	207, 1117
BseSI	GKGCMC	2 cut(s)	159, 718
BseXI	GCAGC	5 cut(s)	112, 712, 1012, 1664, 1844
BsgI	GTGCAG	3 cut(s)	270, 590, 894
Bsh1236I	CGCG	1 cut(s)	626
BshFI	GGCC	2 cut(s)	1088, 2055
BsiHKAI	GWGCWC	4 cut(s)	13, 159, 718, 2306
BsiSI	CCGG	1 cut(s)	312
BslFI	GGGAC	3 cut(s)	217, 619, 1129
BslI	CCNNNNNNNGG	3 cut(s)	1304, 2117, 2353
BsmAI	GTCTC	5 cut(s)	871, 963, 1132, 1330, 1934
BsmFI	GGGAC	3 cut(s)	217, 619, 1129
BsmI	GAATGC	4 cut(s)	276, 1188, 1216, 2155
BsnI	GGCC	2 cut(s)	1088, 2055
Bso31I	GGTCTC	1 cut(s)	1330
Bsp119I	TTCGAA	1 cut(s)	500
Bsp1286I	GDGCHC	4 cut(s)	13, 159, 718, 2306
Bsp143I	GATC	8 cut(s)	3, 331, 762, 1348, 1765, 1858, 2044, 2288
Bsp19I	CCATGG	1 cut(s)	2103
BspACI	CCGC	6 cut(s)	617, 1755, 1952, 2118, 2372, 2389
BspANI	GGCC	2 cut(s)	1088, 2055
BspCNI	CTCAG	2 cut(s)	268, 724
BspFNI	CGCG	1 cut(s)	626
BspHI	TCATGA	1 cut(s)	708
BspLI	GGNNCC	4 cut(s)	205, 333, 414, 2109
BspMAI	CTGCAG	2 cut(s)	1639, 1946
BspPI	GGATC	4 cut(s)	326, 339, 757, 1866
BspQI	GCTCTTC	1 cut(s)	2294
BspT104I	TTCGAA	1 cut(s)	500
BspTNI	GGTCTC	1 cut(s)	1330
BsrDI	GCAATG	5 cut(s)	374, 867, 1069, 1830, 1848
BsrI	ACTGG	2 cut(s)	207, 1117
BssECI	CCNNGG	2 cut(s)	1554, 2103
BssMI	GATC	8 cut(s)	3, 331, 762, 1348, 1765, 1858, 2044, 2288
BssNAI	GTATAC	1 cut(s)	93
BssT1I	CCWWGG	1 cut(s)	2103
Bst1107I	GTATAC	1 cut(s)	93
Bst2UI	CCWGG	3 cut(s)	1513, 1555, 2325
Bst4CI	ACNGT	2 cut(s)	161, 1598
Bst6I	CTCTTC	3 cut(s)	135, 1782, 2294
BstAPI	GCANNNNNTGC	6 cut(s)	299, 1071, 1440, 1829, 1838, 2258
BstBI	TTCGAA	1 cut(s)	500
BstC8I	GCNNGC	9 cut(s)	118, 550, 925, 1684, 1830, 1942, 2035, 2146, 2278
BstDEI	CTNAG	2 cut(s)	276, 732
BstDSI	CCRYGG	1 cut(s)	2103
BstENI	CCTNNNNNAGG	1 cut(s)	1302
BstF5I	GGATG	9 cut(s)	369, 384, 547, 641, 1017, 1276, 1626, 2157, 2333
BstFNI	CGCG	1 cut(s)	626
BstKTI	GATC	8 cut(s)	6, 334, 765, 1351, 1768, 1861, 2047, 2291
BstMAI	GTCTC	5 cut(s)	871, 963, 1132, 1330, 1934
BstMBI	GATC	8 cut(s)	3, 331, 762, 1348, 1765, 1858, 2044, 2288
BstNI	CCWGG	3 cut(s)	1513, 1555, 2325
BstNSI	RCATGY	8 cut(s)	297, 1032, 1438, 1540, 1744, 1952, 2148, 2252
BstSCI	CCNGG	4 cut(s)	311, 1511, 1553, 2323
BstSFI	CTRYAG	3 cut(s)	1635, 1942, 2366
BstSLI	GKGCMC	2 cut(s)	159, 718
BstUI	CGCG	1 cut(s)	626
BstV1I	GCAGC	5 cut(s)	112, 712, 1012, 1664, 1844
BstX2I	RGATCY	3 cut(s)	331, 762, 2044
BstYI	RGATCY	3 cut(s)	331, 762, 2044
BstZ17I	GTATAC	1 cut(s)	93
BsuI	GTATCC	3 cut(s)	1519, 1526, 1910
BsuRI	GGCC	2 cut(s)	1088, 2055
BtgI	CCRYGG	1 cut(s)	2103
BtrI	CACGTC	1 cut(s)	1206
BtsCI	GGATG	9 cut(s)	369, 384, 547, 641, 1017, 1276, 1626, 2157, 2333
BtsI	GCAGTG	4 cut(s)	120, 351, 426, 1644
BtsIMutI	CAGTG	4 cut(s)	120, 351, 426, 1644
Cac8I	GCNNGC	9 cut(s)	118, 550, 925, 1684, 1830, 1942, 2035, 2146, 2278
CciI	TCATGA	1 cut(s)	708
Cfr13I	GGNCC	2 cut(s)	204, 2344
Csp6I	GTAC	3 cut(s)	52, 622, 1362
CspCI	CAANNNNNGTGG	2 cut(s)	979, 1014
CviQI	GTAC	3 cut(s)	52, 622, 1362
DdeI	CTNAG	2 cut(s)	276, 732
DpnI	GATC	8 cut(s)	5, 333, 764, 1350, 1767, 1860, 2046, 2290
DpnII	GATC	8 cut(s)	3, 331, 762, 1348, 1765, 1858, 2044, 2288
DriI	GACNNNNNGTC	1 cut(s)	1459
Eam1104I	CTCTTC	3 cut(s)	135, 1782, 2294
Eam1105I	GACNNNNNGTC	1 cut(s)	1459
EarI	CTCTTC	3 cut(s)	135, 1782, 2294
EciI	GGCGGA	1 cut(s)	2133
Ecl136II	GAGCTC	2 cut(s)	11, 2304
Eco130I	CCWWGG	1 cut(s)	2103
Eco24I	GRGCYC	2 cut(s)	13, 2306
Eco31I	GGTCTC	1 cut(s)	1330
Eco47I	GGWCC	2 cut(s)	204, 2344
Eco53kI	GAGCTC	2 cut(s)	11, 2304
Eco57I	CTGAAG	2 cut(s)	131, 966
EcoICRI	GAGCTC	2 cut(s)	11, 2304
EcoNI	CCTNNNNNAGG	1 cut(s)	1302
EcoRI	GAATTC	1 cut(s)	29
EcoRII	CCWGG	3 cut(s)	1511, 1553, 2323
EcoT14I	CCWWGG	1 cut(s)	2103
EcoT22I	ATGCAT	2 cut(s)	1228, 2157
EcoT38I	GRGCYC	2 cut(s)	13, 2306
ErhI	CCWWGG	1 cut(s)	2103
FalI	AAGNNNNNCTT	2 cut(s)	80, 112
FaqI	GGGAC	3 cut(s)	217, 619, 1129
FauI	CCCGC	3 cut(s)	610, 1945, 2365
FbaI	TGATCA	1 cut(s)	3
FblI	GTMKAC	2 cut(s)	92, 1248
Fnu4HI	GCNGC	5 cut(s)	126, 726, 1026, 1653, 1833
FokI	GGATG	9 cut(s)	376, 391, 554, 648, 1004, 1283, 1613, 2164, 2340
FriOI	GRGCYC	2 cut(s)	13, 2306
Fsp4HI	GCNGC	5 cut(s)	126, 726, 1026, 1653, 1833
FspBI	CTAG	6 cut(s)	77, 426, 1124, 1649, 2051, 2262
GluI	GCNGC	5 cut(s)	126, 726, 1026, 1653, 1833
HaeIII	GGCC	2 cut(s)	1088, 2055
HapII	CCGG	1 cut(s)	312
HincII	GTYRAC	1 cut(s)	2200
HindII	GTYRAC	1 cut(s)	2200
HindIII	AAGCTT	1 cut(s)	2076
HinfI	GANTC	7 cut(s)	443, 794, 1097, 1149, 1910, 2121, 2188
HpaI	GTTAAC	1 cut(s)	2200
HpaII	CCGG	1 cut(s)	312
HphI	GGTGA	8 cut(s)	253, 397, 590, 1253, 1463, 1568, 2282, 2387
Hpy166II	GTNNAC	5 cut(s)	93, 157, 716, 1249, 2200
Hpy188I	TCNGA	8 cut(s)	8, 213, 493, 799, 1050, 1102, 1774, 2242
Hpy8I	GTNNAC	5 cut(s)	93, 157, 716, 1249, 2200
HpyAV	CCTTC	5 cut(s)	106, 106, 850, 1640, 1961
HpyCH4III	ACNGT	2 cut(s)	161, 1598
HpyCH4IV	ACGT	1 cut(s)	1205
HpyF3I	CTNAG	2 cut(s)	276, 732
HpySE526I	ACGT	1 cut(s)	1205
Ksp22I	TGATCA	1 cut(s)	3
KspAI	GTTAAC	1 cut(s)	2200
Kzo9I	GATC	8 cut(s)	3, 331, 762, 1348, 1765, 1858, 2044, 2288
LguI	GCTCTTC	1 cut(s)	2294
LmnI	GCTCC	3 cut(s)	1036, 2107, 2129
Lsp1109I	GCAGC	5 cut(s)	112, 712, 1012, 1664, 1844
LweI	GCATC	9 cut(s)	354, 1026, 1291, 1396, 1635, 1875, 2088, 2142, 2263
MaeI	CTAG	6 cut(s)	77, 426, 1124, 1649, 2051, 2262
MaeII	ACGT	1 cut(s)	1205
MaeIII	GTNAC	4 cut(s)	1201, 1451, 1612, 2375
MalI	GATC	8 cut(s)	5, 333, 764, 1350, 1767, 1860, 2046, 2290
MboI	GATC	8 cut(s)	3, 331, 762, 1348, 1765, 1858, 2044, 2288
MboII	GAAGA	5 cut(s)	152, 1799, 2039, 2311, 2326
MfeI	CAATTG	1 cut(s)	866
MflI	RGATCY	3 cut(s)	331, 762, 2044
MhlI	GDGCHC	4 cut(s)	13, 159, 718, 2306
MlyI	GAGTC	2 cut(s)	2130, 2197
MmeI	TCCRAC	3 cut(s)	1248, 1927, 2001
Mph1103I	ATGCAT	2 cut(s)	1228, 2157
MroXI	GAANNNNTTC	1 cut(s)	1980
MseI	TTAA	8 cut(s)	65, 405, 1083, 1343, 1479, 1493, 2091, 2199
MslI	CAYNNNNRTG	4 cut(s)	465, 771, 1074, 2160
MspA1I	CMGCKG	1 cut(s)	1466
MspI	CCGG	1 cut(s)	312
MspR9I	CCNGG	4 cut(s)	313, 1513, 1555, 2325
MunI	CAATTG	1 cut(s)	866
Mva1269I	GAATGC	4 cut(s)	276, 1188, 1216, 2155
MvaI	CCWGG	3 cut(s)	1513, 1555, 2325
MvnI	CGCG	1 cut(s)	626
NciI	CCSGG	1 cut(s)	313
NcoI	CCATGG	1 cut(s)	2103
NdeII	GATC	8 cut(s)	3, 331, 762, 1348, 1765, 1858, 2044, 2288
NlaIV	GGNNCC	4 cut(s)	205, 333, 414, 2109
NmeAIII	GCCGAG	1 cut(s)	1307
NmuCI	GTSAC	4 cut(s)	1201, 1451, 1612, 2375
NsiI	ATGCAT	2 cut(s)	1228, 2157
NspI	RCATGY	8 cut(s)	297, 1032, 1438, 1540, 1744, 1952, 2148, 2252
NspV	TTCGAA	1 cut(s)	500
PaeI	GCATGC	1 cut(s)	2148
PagI	TCATGA	1 cut(s)	708
PciI	ACATGT	1 cut(s)	1740
PciSI	GCTCTTC	1 cut(s)	2294
PctI	GAATGC	4 cut(s)	276, 1188, 1216, 2155
PdmI	GAANNNNTTC	1 cut(s)	1980
PfeI	GAWTC	5 cut(s)	443, 794, 1097, 1149, 1910
PfoI	TCCNGGA	1 cut(s)	1511
PkrI	GCNGC	5 cut(s)	127, 727, 1027, 1654, 1834
PleI	GAGTC	2 cut(s)	2129, 2196
PpsI	GAGTC	2 cut(s)	2129, 2196
PscI	ACATGT	1 cut(s)	1740
PshBI	ATTAAT	2 cut(s)	1493, 2091
PsiI	TTATAA	2 cut(s)	1220, 1385
Psp124BI	GAGCTC	2 cut(s)	13, 2306
Psp6I	CCWGG	3 cut(s)	1511, 1553, 2323
PspGI	CCWGG	3 cut(s)	1511, 1553, 2323
PspN4I	GGNNCC	4 cut(s)	205, 333, 414, 2109
PspPI	GGNCC	2 cut(s)	204, 2344
PstI	CTGCAG	2 cut(s)	1639, 1946
PsuI	RGATCY	3 cut(s)	331, 762, 2044
PvuII	CAGCTG	1 cut(s)	1466
RsaI	GTAC	3 cut(s)	53, 623, 1363
RsaNI	GTAC	3 cut(s)	52, 622, 1362
RseI	CAYNNNNRTG	4 cut(s)	465, 771, 1074, 2160
SacI	GAGCTC	2 cut(s)	13, 2306
SapI	GCTCTTC	1 cut(s)	2294
SaqAI	TTAA	8 cut(s)	65, 405, 1083, 1343, 1479, 1493, 2091, 2199
SatI	GCNGC	5 cut(s)	126, 726, 1026, 1653, 1833
Sau3AI	GATC	8 cut(s)	3, 331, 762, 1348, 1765, 1858, 2044, 2288
Sau96I	GGNCC	2 cut(s)	204, 2344
SchI	GAGTC	2 cut(s)	2130, 2197
ScrFI	CCNGG	4 cut(s)	313, 1513, 1555, 2325
SduI	GDGCHC	4 cut(s)	13, 159, 718, 2306
SfaNI	GCATC	9 cut(s)	354, 1026, 1291, 1396, 1635, 1875, 2088, 2142, 2263
SfcI	CTRYAG	3 cut(s)	1635, 1942, 2366
SfuI	TTCGAA	1 cut(s)	500
SinI	GGWCC	2 cut(s)	204, 2344
SmiMI	CAYNNNNRTG	4 cut(s)	465, 771, 1074, 2160
SmlI	CTYRAG	3 cut(s)	42, 1799, 2204
SmoI	CTYRAG	3 cut(s)	42, 1799, 2204
SphI	GCATGC	1 cut(s)	2148
SsiI	CCGC	6 cut(s)	617, 1755, 1952, 2118, 2372, 2389
SspMI	CTAG	6 cut(s)	77, 426, 1124, 1649, 2051, 2262
SstI	GAGCTC	2 cut(s)	13, 2306
StyD4I	CCNGG	4 cut(s)	311, 1511, 1553, 2323
StyI	CCWWGG	1 cut(s)	2103
TaaI	ACNGT	2 cut(s)	161, 1598
TaiI	ACGT	1 cut(s)	1208
TaqI	TCGA	7 cut(s)	500, 561, 792, 967, 1166, 1764, 2312
TfiI	GAWTC	5 cut(s)	443, 794, 1097, 1149, 1910
Tru1I	TTAA	8 cut(s)	65, 405, 1083, 1343, 1479, 1493, 2091, 2199
Tru9I	TTAA	8 cut(s)	65, 405, 1083, 1343, 1479, 1493, 2091, 2199
TscAI	CASTG	4 cut(s)	127, 351, 426, 1644
TseFI	GTSAC	4 cut(s)	1201, 1451, 1612, 2375
TseI	GCWGC	5 cut(s)	125, 725, 1025, 1652, 1832
Tsp45I	GTSAC	4 cut(s)	1201, 1451, 1612, 2375
TspGWI	ACGGA	1 cut(s)	1863
TspRI	CASTG	4 cut(s)	127, 351, 426, 1644
VneI	GTGCAC	2 cut(s)	155, 714
VpaK11BI	GGWCC	2 cut(s)	204, 2344
VspI	ATTAAT	2 cut(s)	1493, 2091
XagI	CCTNNNNNAGG	1 cut(s)	1302
XapI	RAATTY	4 cut(s)	29, 388, 1052, 1469
XbaI	TCTAGA	2 cut(s)	76, 425
XceI	RCATGY	8 cut(s)	297, 1032, 1438, 1540, 1744, 1952, 2148, 2252
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2331
XmiI	GTMKAC	2 cut(s)	92, 1248
XmnI	GAANNNNTTC	1 cut(s)	1980
XspI	CTAG	6 cut(s)	77, 426, 1124, 1649, 2051, 2262
Zsp2I	ATGCAT	2 cut(s)	1228, 2157

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.