Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0011932

Physical Location & Seq

Genomic Coordinates Forward (+)

44699426 .. 44703204

Gene Structure 3779 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0327800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1875 bp

ATGTCTGCTCGGTATCTGAAGAAAGTTCTCAAGGAAGAACAAGAGGAGCGACAACTGGAATCAGACCACGAAGAAGAAGACGACGACCACCGCCAGCTCAACGGCAAAGCAAAGGTCAACCCTTTCGACCTCCTCAACGAAGAGGAAGACGATGCCGACGACCACCAGGAGGATGAGTCAGAAACTGTTGATGAACCCTCGAGTGTGGTGAAGCCTAGTGCTGATGTGGTTTCGACATCCAGTCAAAAATCCAAGAAGAAGAAGAAGAAGAAAGGCAAAGAGGGCTCTTCTTCTAATGCAGCTTCACCGAGAGTTAAAAAGTCGCCGGATGAGGTTCTGGAAGAATTCTATGAGTATGCGCATGAAAGACAAGCCGAGACGAGGGCTGGTGGTGATGCGGTTAAGCATTCGTATGAAAAGTATGTGCCCTTCATATTGCAAGTGGATCCCAAGTACTTGAATGCCGACAATGAGATGCGAAGAATCTTTGGGGCTAAGGTGGTCAAGTCGTTTGAGAAGAATCAACAGAGTGGAAGCTCTAGAATGGCGCGTGGTGGAAGACGCGGCGCAGTTCATAGGAAGTCTTTCCTTGTCACTCCGTTGGAGCATTGGCCTCGCTGGGACGGTGCTATGAACATGGAACTCCTTCACTCCCCCAATGGATACTATGATTATCGATATACCTATTCGTCAGCCTACCGTCAAGCTCAGAGTGCATTTGAATCTGCCAAAGCTATACATGATCTCAATGCCATTGCAAGTGTTTTATTATACTATCCTTACCATTTAGATTCGCTACTAACCATGGCAGAGTACTTTAAGTTTGTGGGTGAGCATCAAATGTCAGCAGATGCTATCTCAAAGTGCTTATATGCTTTGGAATGTGCATGGTCTCCAATGTTCACTCCCTTTAAGGGTGATTGCCAAGTGAAATACAGCCATGAAGCAAACAAACCGCTGTTTGTTGCACTTTTTACTCACATGAAAAGTATGGACAGACGTGGCTGTCATCGATCTGCTTTAGAAGTTTGCAAGTTTTTACTGTCACTAGATACTGATGATCCAATGGGGGCCATGTTCTGTATTGACTATTTTGCGGTGAGGGCAGAGGAGTATGCATGGCTAGAACGTTTCTCTGAAGAATATAAAAGTGATAACACCCTATGGTTGTTTCCAAATTTTTCATATTCCCTTGCCGTATGCCGATTGTATCTTGAGAAAGCGGAATCTTCGAAAGATCCAGCTATGGAAACCACCAAGGCTACTTCGACTGATCTTATGAAGCAGGCATTGATGCTTCATCCCACAGTCCTCAAGAAACTAGTGGCAAAGGTTCCTTTGAAGGAACGGGTGTGGACGGATATACTCAAAAATGCATTCTTCCAAGCAGATGAAGTAGGAATCCCATCCTTGGACCACCTGGTTAACATATACGTTGAGAGTAATCATATTATATGGAGGCTTCCAGAATTGCAGAAATTGCTGCGGGAAGCTGCACAGCTCGTGATCGAGACTCTAAGACAGAATAGTAGTGAAAAGAATGATTGGGCATGTGTGAGAAAAGAAGCATTCTCATCTGACAAGAATGAGTATTCCCACTTGTTGGTTTCAGATTTCTCTTATACATTGCCTGCTGCCCCACCTGAAAATTTGCAACATTTTATGGCCAATGCAAGGATGGAGGATGTTGTGCATAATGAGCAGCATCTAGTCAATCTAAATGAGGGTGGCCATGCTCCCCGTGATGTTGCAAATCGAAATCCATTAGCGGTCTTGTTTGAGTCGGTCTTACCATGGGTTCATTATGGGGAAGGAGCGGTTGTTGAGGAGGAAGACCAACAAAATGGCCATGGTCCGGGCAATCAAGAACATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

624

Amino Acids

71.47

Weight (kDa)

5.58

Isoelectric Point (pI)

45.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Tcf25	PF04910	225 - 549	3e-69	Transcriptional repressor TCF25

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011932)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39620 AT2G40720
fragaria_vesca	FvH4_7g21891
malus_domestica	MD07G1193300.v1.1
prunus_persica	Prupe.2G231000_v2.0.a1
pyrus_communis	pycom07g18250
rosa_chinensis	RchiOBHm_Chr1g0366141
rosa_laevigata	RLG00000027363
rosa_multiflora	Rmu_co8484073.1_g000001 Rmu_sc0003987.1_g000001
rosa_roxburghii	Rroxscaffold_4G00290450 Rroxscaffold_4G00290460
rosa_rugosa	Rorug01G0327800 Rorug01G0327900
rosa_samantha	Rh1AG335900 Rh1BG297300 Rh1CG313300 Rh1DG329100
rosa_wichuraiana	Rw1G029800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1005
Acc16I	TGCGCA	1 cut(s)	360
AccB7I	CCANNNNNTGG	1 cut(s)	1603
AccBSI	CCGCTC	1 cut(s)	1817
AccII	CGCG	2 cut(s)	550, 564
AciI	CCGC	9 cut(s)	91, 398, 564, 956, 1097, 1223, 1486, 1769, 1817
AclI	AACGTT	1 cut(s)	1129
AclWI	GGATC	4 cut(s)	440, 453, 1055, 1232
AcoI	YGGCCR	3 cut(s)	1665, 1729, 1846
AcsI	RAATTY	3 cut(s)	344, 1177, 1648
AcuI	CTGAAG	2 cut(s)	38, 1158
AfaI	GTAC	2 cut(s)	455, 815
AfiI	CCNNNNNNNGG	7 cut(s)	169, 381, 914, 1411, 1603, 1674, 1855
AgsI	TTSAA	3 cut(s)	460, 722, 1342
AhdI	GACNNNNNGTC	1 cut(s)	240
AhlI	ACTAGT	1 cut(s)	1321
AjiI	CACGTC	1 cut(s)	1001
AjnI	CCWGG	2 cut(s)	165, 1419
AluBI	AGCT	8 cut(s)	97, 302, 537, 707, 734, 1244, 1493, 1501
AluI	AGCT	8 cut(s)	97, 302, 537, 707, 734, 1244, 1493, 1501
Alw26I	GTCTC	3 cut(s)	371, 897, 1505
AlwI	GGATC	4 cut(s)	440, 453, 1055, 1232
AlwNI	CAGNNNCTG	1 cut(s)	185
Ama87I	CYCGRG	1 cut(s)	199
AoxI	GGCC	5 cut(s)	611, 1071, 1665, 1729, 1846
ApeKI	GCWGC	5 cut(s)	299, 1483, 1493, 1634, 1702
ApoI	RAATTY	3 cut(s)	344, 1177, 1648
ArsI	GACNNNNNNTTYG	2 cut(s)	99, 131
Asp700I	GAANNNNTTC	2 cut(s)	584, 645
AspLEI	GCGC	3 cut(s)	361, 550, 569
AspS9I	GGNCC	3 cut(s)	1071, 1414, 1853
AsuC2I	CCSGG	1 cut(s)	1857
AsuHPI	GGTGA	6 cut(s)	220, 297, 404, 842, 929, 1111
AsuII	TTCGAA	1 cut(s)	1232
AvaI	CYCGRG	1 cut(s)	199
AvaII	GGWCC	2 cut(s)	1414, 1853
BaeGI	GKGCMC	1 cut(s)	429
BalI	TGGCCA	3 cut(s)	1667, 1731, 1848
BamHI	GGATCC	1 cut(s)	445
BanII	GRGCYC	1 cut(s)	287
BarI	GAAGNNNNNNTAC	2 cut(s)	413, 445
BauI	CACGAG	1 cut(s)	1502
BbsI	GAAGAC	4 cut(s)	84, 153, 565, 1839
BbvI	GCAGC	5 cut(s)	311, 1470, 1480, 1621, 1714
BccI	CCATC	2 cut(s)	1414, 1672
BceAI	ACGGC	2 cut(s)	118, 1181
BcgI	CGANNNNNNTGC	2 cut(s)	596, 630
BciT130I	CCWGG	2 cut(s)	167, 1421
BciVI	GTATCC	1 cut(s)	656
BcnI	CCSGG	1 cut(s)	1857
BcoDI	GTCTC	3 cut(s)	371, 897, 1505
BcuI	ACTAGT	1 cut(s)	1321
BfaI	CTAG	6 cut(s)	216, 540, 1049, 1124, 1322, 1709
BfuI	GTATCC	1 cut(s)	656
BisI	GCNGC	6 cut(s)	300, 565, 1484, 1494, 1635, 1703
BlsI	GCNGC	6 cut(s)	301, 566, 1485, 1495, 1636, 1704
BmcAI	AGTACT	2 cut(s)	455, 815
Bme1390I	CCNGG	3 cut(s)	167, 1421, 1857
Bme18I	GGWCC	2 cut(s)	1414, 1853
BmeRI	GACNNNNNGTC	1 cut(s)	240
BmeT110I	CYCGRG	1 cut(s)	199
BmgBI	CACGTC	1 cut(s)	1001
BmgT120I	GGNCC	3 cut(s)	1071, 1414, 1853
BmiI	GGNNCC	3 cut(s)	447, 1072, 1335
BmrFI	CCNGG	3 cut(s)	167, 1421, 1857
BmsI	GCATC	7 cut(s)	142, 385, 465, 841, 844, 1284, 1714
BpiI	GAAGAC	4 cut(s)	84, 153, 565, 1839
Bpu10I	CCTNAGC	1 cut(s)	495
Bpu14I	TTCGAA	1 cut(s)	1232
BpuEI	CTTGAG	3 cut(s)	14, 1235, 1298
BpuMI	CCSGG	1 cut(s)	1857
Bsa29I	ATCGAT	2 cut(s)	676, 1012
BsaI	GGTCTC	1 cut(s)	897
BsaJI	CCNNGG	5 cut(s)	804, 1257, 1410, 1793, 1849
BsaXI	ACNNNNNCTCC	4 cut(s)	161, 191, 1806, 1836
Bsc4I	CCNNNNNNNGG	7 cut(s)	169, 381, 914, 1411, 1603, 1674, 1855
Bse1I	ACTGG	2 cut(s)	60, 240
Bse3DI	GCAATG	2 cut(s)	753, 1625
BseBI	CCWGG	2 cut(s)	167, 1421
BseCI	ATCGAT	2 cut(s)	676, 1012
BseDI	CCNNGG	5 cut(s)	804, 1257, 1410, 1793, 1849
BseGI	GGATG	7 cut(s)	178, 236, 334, 1300, 1406, 1683, 1690
BseLI	CCNNNNNNNGG	7 cut(s)	169, 381, 914, 1411, 1603, 1674, 1855
BseMI	GCAATG	2 cut(s)	753, 1625
BseMII	CTCAG	1 cut(s)	722
BseNI	ACTGG	2 cut(s)	60, 240
BseRI	GAGGAG	4 cut(s)	59, 122, 1124, 1841
BseSI	GKGCMC	1 cut(s)	429
BseXI	GCAGC	5 cut(s)	311, 1470, 1480, 1621, 1714
BseYI	CCCAGC	1 cut(s)	618
BsgI	GTGCAG	1 cut(s)	1479
Bsh1236I	CGCG	2 cut(s)	550, 564
BshFI	GGCC	5 cut(s)	613, 1073, 1667, 1731, 1848
BshVI	ATCGAT	2 cut(s)	676, 1012
BsiHKCI	CYCGRG	1 cut(s)	199
BsiSI	CCGG	2 cut(s)	326, 1856
BslFI	GGGAC	1 cut(s)	635
BslI	CCNNNNNNNGG	7 cut(s)	169, 381, 914, 1411, 1603, 1674, 1855
BsmAI	GTCTC	3 cut(s)	371, 897, 1505
BsmBI	CGTCTC	1 cut(s)	371
BsmFI	GGGAC	1 cut(s)	635
BsmI	GAATGC	4 cut(s)	406, 466, 1376, 1568
BsnI	GGCC	5 cut(s)	613, 1073, 1667, 1731, 1848
Bso31I	GGTCTC	1 cut(s)	897
BsoBI	CYCGRG	1 cut(s)	199
Bsp119I	TTCGAA	1 cut(s)	1232
Bsp1286I	GDGCHC	2 cut(s)	287, 429
Bsp143I	GATC	7 cut(s)	445, 742, 1013, 1060, 1237, 1273, 1506
Bsp19I	CCATGG	3 cut(s)	804, 1793, 1849
BspACI	CCGC	9 cut(s)	91, 398, 564, 956, 1097, 1223, 1486, 1769, 1817
BspANI	GGCC	5 cut(s)	613, 1073, 1667, 1731, 1848
BspCNI	CTCAG	1 cut(s)	721
BspDI	ATCGAT	2 cut(s)	676, 1012
BspFNI	CGCG	2 cut(s)	550, 564
BspLI	GGNNCC	3 cut(s)	447, 1072, 1335
BspPI	GGATC	4 cut(s)	440, 453, 1055, 1232
BspQI	GCTCTTC	1 cut(s)	292
BspT104I	TTCGAA	1 cut(s)	1232
BspTNI	GGTCTC	1 cut(s)	897
BsrBI	CCGCTC	1 cut(s)	1817
BsrDI	GCAATG	2 cut(s)	753, 1625
BsrI	ACTGG	2 cut(s)	60, 240
BssECI	CCNNGG	5 cut(s)	804, 1257, 1410, 1793, 1849
BssMI	GATC	7 cut(s)	445, 742, 1013, 1060, 1237, 1273, 1506
BssSI	CACGAG	1 cut(s)	1502
BssT1I	CCWWGG	5 cut(s)	804, 1257, 1410, 1793, 1849
Bst2BI	CACGAG	1 cut(s)	1502
Bst2UI	CCWGG	2 cut(s)	167, 1421
Bst4CI	ACNGT	5 cut(s)	187, 626, 701, 1044, 1309
Bst6I	CTCTTC	2 cut(s)	135, 292
BstAPI	GCANNNNNTGC	1 cut(s)	1480
BstBI	TTCGAA	1 cut(s)	1232
BstC8I	GCNNGC	3 cut(s)	95, 1287, 1632
BstDEI	CTNAG	3 cut(s)	495, 708, 1517
BstDSI	CCRYGG	3 cut(s)	804, 1793, 1849
BstF5I	GGATG	7 cut(s)	178, 236, 334, 1300, 1406, 1683, 1690
BstFNI	CGCG	2 cut(s)	550, 564
BstHHI	GCGC	3 cut(s)	361, 550, 569
BstKTI	GATC	7 cut(s)	448, 745, 1016, 1063, 1240, 1276, 1509
BstMAI	GTCTC	3 cut(s)	371, 897, 1505
BstMBI	GATC	7 cut(s)	445, 742, 1013, 1060, 1237, 1273, 1506
BstMWI	GCNNNNNNNGC	5 cut(s)	282, 713, 1103, 1480, 1699
BstNI	CCWGG	2 cut(s)	167, 1421
BstNSI	RCATGY	1 cut(s)	1554
BstSCI	CCNGG	3 cut(s)	165, 1419, 1855
BstSLI	GKGCMC	1 cut(s)	429
BstUI	CGCG	2 cut(s)	550, 564
BstV1I	GCAGC	5 cut(s)	311, 1470, 1480, 1621, 1714
BstV2I	GAAGAC	4 cut(s)	84, 153, 565, 1839
BstX2I	RGATCY	2 cut(s)	445, 1237
BstXI	CCANNNNNNTGG	1 cut(s)	1844
BstYI	RGATCY	2 cut(s)	445, 1237
Bsu15I	ATCGAT	2 cut(s)	676, 1012
BsuI	GTATCC	1 cut(s)	656
BsuRI	GGCC	5 cut(s)	613, 1073, 1667, 1731, 1848
BsuTUI	ATCGAT	2 cut(s)	676, 1012
BtgI	CCRYGG	3 cut(s)	804, 1793, 1849
BtrI	CACGTC	1 cut(s)	1001
BtsCI	GGATG	7 cut(s)	178, 236, 334, 1300, 1406, 1683, 1690
Cac8I	GCNNGC	3 cut(s)	95, 1287, 1632
CaiI	CAGNNNCTG	1 cut(s)	185
CfoI	GCGC	3 cut(s)	361, 550, 569
Cfr13I	GGNCC	3 cut(s)	1071, 1414, 1853
ClaI	ATCGAT	2 cut(s)	676, 1012
CseI	GACGC	1 cut(s)	570
CsiI	ACCWGGT	1 cut(s)	1419
Csp6I	GTAC	2 cut(s)	454, 814
CviQI	GTAC	2 cut(s)	454, 814
DdeI	CTNAG	3 cut(s)	495, 708, 1517
DpnI	GATC	7 cut(s)	447, 744, 1015, 1062, 1239, 1275, 1508
DpnII	GATC	7 cut(s)	445, 742, 1013, 1060, 1237, 1273, 1506
DrdI	GACNNNNNNGTC	1 cut(s)	1005
DriI	GACNNNNNGTC	1 cut(s)	240
DseDI	GACNNNNNNGTC	1 cut(s)	1005
EaeI	YGGCCR	3 cut(s)	1665, 1729, 1846
Eam1104I	CTCTTC	2 cut(s)	135, 292
Eam1105I	GACNNNNNGTC	1 cut(s)	240
EarI	CTCTTC	2 cut(s)	135, 292
Eco130I	CCWWGG	5 cut(s)	804, 1257, 1410, 1793, 1849
Eco24I	GRGCYC	1 cut(s)	287
Eco31I	GGTCTC	1 cut(s)	897
Eco47I	GGWCC	2 cut(s)	1414, 1853
Eco57I	CTGAAG	2 cut(s)	38, 1158
Eco88I	CYCGRG	1 cut(s)	199
EcoRI	GAATTC	1 cut(s)	344
EcoRII	CCWGG	2 cut(s)	165, 1419
EcoT14I	CCWWGG	5 cut(s)	804, 1257, 1410, 1793, 1849
EcoT22I	ATGCAT	2 cut(s)	1120, 1378
EcoT38I	GRGCYC	1 cut(s)	287
ErhI	CCWWGG	5 cut(s)	804, 1257, 1410, 1793, 1849
Esp3I	CGTCTC	1 cut(s)	371
FaqI	GGGAC	1 cut(s)	635
FauI	CCCGC	1 cut(s)	1479
Fnu4HI	GCNGC	6 cut(s)	300, 565, 1484, 1494, 1635, 1703
FokI	GGATG	7 cut(s)	185, 223, 341, 1287, 1393, 1690, 1697
FriOI	GRGCYC	1 cut(s)	287
Fsp4HI	GCNGC	6 cut(s)	300, 565, 1484, 1494, 1635, 1703
FspAI	RTGCGCAY	1 cut(s)	360
FspBI	CTAG	6 cut(s)	216, 540, 1049, 1124, 1322, 1709
FspI	TGCGCA	1 cut(s)	360
GlaI	GCGC	3 cut(s)	360, 549, 568
GluI	GCNGC	6 cut(s)	300, 565, 1484, 1494, 1635, 1703
GsaI	CCCAGC	1 cut(s)	622
HaeIII	GGCC	5 cut(s)	613, 1073, 1667, 1731, 1848
HapII	CCGG	2 cut(s)	326, 1856
HgaI	GACGC	1 cut(s)	570
HhaI	GCGC	3 cut(s)	361, 550, 569
Hin6I	GCGC	3 cut(s)	359, 548, 567
HinP1I	GCGC	3 cut(s)	359, 548, 567
HincII	GTYRAC	2 cut(s)	118, 1426
HindII	GTYRAC	2 cut(s)	118, 1426
HpaI	GTTAAC	1 cut(s)	1426
HpaII	CCGG	2 cut(s)	326, 1856
HphI	GGTGA	6 cut(s)	220, 297, 404, 842, 929, 1111
Hpy166II	GTNNAC	4 cut(s)	118, 903, 1356, 1426
Hpy188I	TCNGA	7 cut(s)	18, 64, 181, 711, 1138, 1579, 1612
Hpy188III	TCNNGA	8 cut(s)	338, 540, 1214, 1315, 1466, 1504, 1510, 1865
Hpy8I	GTNNAC	4 cut(s)	118, 903, 1356, 1426
Hpy99I	CGWCG	2 cut(s)	86, 161
HpyAV	CCTTC	4 cut(s)	439, 656, 1336, 1805
HpyCH4III	ACNGT	5 cut(s)	187, 626, 701, 1044, 1309
HpyCH4IV	ACGT	3 cut(s)	1000, 1129, 1434
HpyF10VI	GCNNNNNNNGC	5 cut(s)	282, 713, 1103, 1480, 1699
HpyF3I	CTNAG	3 cut(s)	495, 708, 1517
HpySE526I	ACGT	3 cut(s)	1000, 1129, 1434
HspAI	GCGC	3 cut(s)	359, 548, 567
KspAI	GTTAAC	1 cut(s)	1426
Kzo9I	GATC	7 cut(s)	445, 742, 1013, 1060, 1237, 1273, 1506
LguI	GCTCTTC	1 cut(s)	292
LmnI	GCTCC	4 cut(s)	46, 604, 1741, 1814
Lsp1109I	GCAGC	5 cut(s)	311, 1470, 1480, 1621, 1714
LweI	GCATC	7 cut(s)	142, 385, 465, 841, 844, 1284, 1714
MabI	ACCWGGT	1 cut(s)	1419
MaeI	CTAG	6 cut(s)	216, 540, 1049, 1124, 1322, 1709
MaeII	ACGT	3 cut(s)	1000, 1129, 1434
MaeIII	GTNAC	2 cut(s)	592, 1044
MalI	GATC	7 cut(s)	447, 744, 1015, 1062, 1239, 1275, 1508
MbiI	CCGCTC	1 cut(s)	1817
MboI	GATC	7 cut(s)	445, 742, 1013, 1060, 1237, 1273, 1506
MflI	RGATCY	2 cut(s)	445, 1237
MhlI	GDGCHC	2 cut(s)	287, 429
MlsI	TGGCCA	3 cut(s)	1667, 1731, 1848
MluCI	AATT	5 cut(s)	344, 1177, 1469, 1478, 1648
MluNI	TGGCCA	3 cut(s)	1667, 1731, 1848
MlyI	GAGTC	3 cut(s)	185, 1507, 1790
MmeI	TCCRAC	1 cut(s)	582
Mox20I	TGGCCA	3 cut(s)	1667, 1731, 1848
Mph1103I	ATGCAT	2 cut(s)	1120, 1378
MroXI	GAANNNNTTC	2 cut(s)	584, 645
MscI	TGGCCA	3 cut(s)	1667, 1731, 1848
MseI	TTAA	5 cut(s)	315, 402, 819, 912, 1425
MslI	CAYNNNNRTG	1 cut(s)	411
Msp20I	TGGCCA	3 cut(s)	1667, 1731, 1848
MspA1I	CMGCKG	1 cut(s)	958
MspI	CCGG	2 cut(s)	326, 1856
MspR9I	CCNGG	3 cut(s)	167, 1421, 1857
Mva1269I	GAATGC	4 cut(s)	406, 466, 1376, 1568
MvaI	CCWGG	2 cut(s)	167, 1421
MvnI	CGCG	2 cut(s)	550, 564
MwoI	GCNNNNNNNGC	5 cut(s)	282, 713, 1103, 1480, 1699
NciI	CCSGG	1 cut(s)	1857
NcoI	CCATGG	3 cut(s)	804, 1793, 1849
NdeII	GATC	7 cut(s)	445, 742, 1013, 1060, 1237, 1273, 1506
NlaIV	GGNNCC	3 cut(s)	447, 1072, 1335
NmeAIII	GCCGAG	1 cut(s)	400
NmuCI	GTSAC	2 cut(s)	592, 1044
NsbI	TGCGCA	1 cut(s)	360
NsiI	ATGCAT	2 cut(s)	1120, 1378
NspI	RCATGY	1 cut(s)	1554
NspV	TTCGAA	1 cut(s)	1232
PaeR7I	CTCGAG	1 cut(s)	199
PciSI	GCTCTTC	1 cut(s)	292
PcsI	WCGNNNNNNNCGW	1 cut(s)	156
PctI	GAATGC	4 cut(s)	406, 466, 1376, 1568
PdmI	GAANNNNTTC	2 cut(s)	584, 645
PfeI	GAWTC	7 cut(s)	59, 483, 520, 722, 791, 1226, 1401
PflMI	CCANNNNNTGG	1 cut(s)	1603
PkrI	GCNGC	6 cut(s)	301, 566, 1485, 1495, 1636, 1704
PleI	GAGTC	3 cut(s)	184, 1507, 1789
PpsI	GAGTC	3 cut(s)	184, 1507, 1789
Psp1406I	AACGTT	1 cut(s)	1129
Psp6I	CCWGG	2 cut(s)	165, 1419
PspFI	CCCAGC	1 cut(s)	618
PspGI	CCWGG	2 cut(s)	165, 1419
PspN4I	GGNNCC	3 cut(s)	447, 1072, 1335
PspPI	GGNCC	3 cut(s)	1071, 1414, 1853
PspXI	VCTCGAGB	1 cut(s)	199
PstNI	CAGNNNCTG	1 cut(s)	185
PsuI	RGATCY	2 cut(s)	445, 1237
RsaI	GTAC	2 cut(s)	455, 815
RsaNI	GTAC	2 cut(s)	454, 814
RseI	CAYNNNNRTG	1 cut(s)	411
SapI	GCTCTTC	1 cut(s)	292
SaqAI	TTAA	5 cut(s)	315, 402, 819, 912, 1425
SatI	GCNGC	6 cut(s)	300, 565, 1484, 1494, 1635, 1703
Sau3AI	GATC	7 cut(s)	445, 742, 1013, 1060, 1237, 1273, 1506
Sau96I	GGNCC	3 cut(s)	1071, 1414, 1853
ScaI	AGTACT	2 cut(s)	455, 815
SchI	GAGTC	3 cut(s)	185, 1507, 1790
ScrFI	CCNGG	3 cut(s)	167, 1421, 1857
SduI	GDGCHC	2 cut(s)	287, 429
SexAI	ACCWGGT	1 cut(s)	1419
SfaNI	GCATC	7 cut(s)	142, 385, 465, 841, 844, 1284, 1714
Sfr274I	CTCGAG	1 cut(s)	199
SfuI	TTCGAA	1 cut(s)	1232
SinI	GGWCC	2 cut(s)	1414, 1853
SlaI	CTCGAG	1 cut(s)	199
SmiMI	CAYNNNNRTG	1 cut(s)	411
SmlI	CTYRAG	4 cut(s)	29, 199, 1214, 1313
SmoI	CTYRAG	4 cut(s)	29, 199, 1214, 1313
SpeI	ACTAGT	1 cut(s)	1321
Sse9I	AATT	5 cut(s)	344, 1177, 1469, 1478, 1648
SsiI	CCGC	9 cut(s)	91, 398, 564, 956, 1097, 1223, 1486, 1769, 1817
SspMI	CTAG	6 cut(s)	216, 540, 1049, 1124, 1322, 1709
StyD4I	CCNGG	3 cut(s)	165, 1419, 1855
StyI	CCWWGG	5 cut(s)	804, 1257, 1410, 1793, 1849
TaaI	ACNGT	5 cut(s)	187, 626, 701, 1044, 1309
TaiI	ACGT	3 cut(s)	1003, 1132, 1437
TaqI	TCGA	9 cut(s)	126, 200, 233, 676, 1012, 1232, 1268, 1509, 1756
TaqII	GACCGA	1 cut(s)	1774
TasI	AATT	5 cut(s)	344, 1177, 1469, 1478, 1648
TatI	WGTACW	2 cut(s)	453, 813
TauI	GCSGC	1 cut(s)	567
TfiI	GAWTC	7 cut(s)	59, 483, 520, 722, 791, 1226, 1401
Tru1I	TTAA	5 cut(s)	315, 402, 819, 912, 1425
Tru9I	TTAA	5 cut(s)	315, 402, 819, 912, 1425
TseFI	GTSAC	2 cut(s)	592, 1044
TseI	GCWGC	5 cut(s)	299, 1483, 1493, 1634, 1702
Tsp45I	GTSAC	2 cut(s)	592, 1044
TspGWI	ACGGA	2 cut(s)	588, 1373
Van91I	CCANNNNNTGG	1 cut(s)	1603
VpaK11BI	GGWCC	2 cut(s)	1414, 1853
XapI	RAATTY	3 cut(s)	344, 1177, 1648
XbaI	TCTAGA	1 cut(s)	539
XceI	RCATGY	1 cut(s)	1554
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1675
XhoI	CTCGAG	1 cut(s)	199
XmnI	GAANNNNTTC	2 cut(s)	584, 645
XspI	CTAG	6 cut(s)	216, 540, 1049, 1124, 1322, 1709
ZrmI	AGTACT	2 cut(s)	455, 815
Zsp2I	ATGCAT	2 cut(s)	1120, 1378

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.