Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0011932

Physical Location & Seq

Genomic Coordinates Reverse (-)

10930569 .. 10933217

Gene Structure 2649 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000027363

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2649 bp

ATGAAACAATTCCATGCAGCTACCAAGAATTATCAACACTATCTTGGCCTATTCTCTTCCTGCAAAGATTTGAAGTCCCTGCTTCAAATCCATGCCCAATTAATAGTCTCAGGTCTCCAACAGCACCCTTCCACACTGACCCATCTCATAAATTCCTACTCTTCCTTCCAAAGATGTAATTTTTCGCGCTCAGTTTTCAATTCTGCGCAAAACCCAAGTGTTAGATTATGGAACTACATGATCAGAGCTCATACGAGAGCAAAAGAATTCAAACAAGCTCAAGAAATGTACCATTCTTTGTTAAGGCAAGGTCTAGAGCCAGACAAGTATACCTTTAACTTTGCCCTGAAGGCTTGCACTGCTGCATTGGATTTTAAAGAGGGTGTATTGGTGCACCGTGAAGTAGAGCGTAAAGGGTTAGAGTATGATGTGTTTATTGGGACCAGTCTGATTGATATGTATTGTAAAATGGGGGAGGTGAAATGTGCGGGAGAGGTGTTTGATAGAATGCCTGATAAGGACGTTGTGGCATGTAATGCTTTGATTGCCGGGTTAGCGAAAAGCGAGGATCCTAAGGAAGCAGTGGAGTTTTTTAGGGGGATGCAATGTTGGGGGATGGGGGTGAATTTAGTGAGCTTGTTTAACTTGGTTCCAGCAGTGTCTAGATTGGGAGATATTGATTCTTGTAGGTGTATTCATGGGTATGTGGTTAGGAGGGAGTTGGGTTCAGAGGTTTCGAATGGGTTGATTGATATGTATTGCAAGTGTGGAGATGTGGATGTTGCTCGCAGGGTTTTCGAGATGGTGCAGGGTGGTGATGATGATGGTGGTGTTTTGTGGGGGACAATGATGGCGGGGTACGCGAGTAATGGATGTTTTGTTGAGGTTTTGGAGTTGTTTGATTGCTTGAAAGGGGAGGGCAGTAGAATGAATAAGGTTTGCATCATGAGTGCACTTTTGGCTGCTACAGAGATGAGAGATTTGGAGAAAGGGAGGGAGATTCATTGTTGTGCTTTAGACTTAGAATTAGATTCTGATGTTTCGGTTGCTACTTCTATAACGACCATGTATGCAAAATGTGGAGACATAGAGAAGGCAATACAATTGTTTGAGAGACTTGGAGAAAGAGATTTAGTTGCTTGGTCTGCACTTATATCTGCTTGTGTCCAGTCTGGTATTCCTGAAGTGGCATTGTCTCTCTTTCGAGATAGGCAGAATGAAAATCTCAAACCATGTGGCATAACATTGGTCAGCATCCTTGCTGCATGTGGGGAGCTTTCATATCTGAAATTTGGTAAGAGCATACATTGCTATGCTGTTAAGGCCGATATTGATTCTGATATTTCTACTGGGACAGCCCTAGTCTCCATGTATGCTAAATGTGGATTCTTTACTCCTGCCTTGATTATATTCAACAGAATGCCATCTAAAGATGTTGTGACGTGGAATGCACTTATAAATGCATATACCCAAATAGGTGATGTCTACCATGCTATTGATATGTTGGATGGGTTATGGTTGTCTGGAATAAAACCTGATGCAGGAACGATGGTGGGTATGGTCTCGGCTTGTAGCTTATTAAATGATCTAAATCATGGTACTTGTATTCATGGACGAATTATAAAGAATGGGTTTGAACATGACGCACCTTTGAAAAATGCTCTTATTGGCATGTATTGCAAATGTGGTGACATTTCGTCAGCTGAACTTCTATTTAATAGAACAAAATTAATGAAAGATGTGGTATCCTGGAATGTAATGATTGCAGGATACATGCAGGGTGGATATGCCAGGGAAGCTATATCTGTGTTTCACCAGATGAAATTAGAGAACTGTCAGCCTAATTTAGTCACATTTGTTAGCATCCTTCCTGCAGTGGCATATCTAGCAGCATTACGAGAGGGCATGGCTTTTCATGCCTGCATTATCCAGAATGGGTTTCTATCTAATACTCTTGTGGGAAATAGTCTTATTGACATGTATGCTAAATGCGGACAGCTCGATCATTCAGAAAAATGCTTTGAAGAGATGGAACTCAAGGACAAAGTTTCATGGAACGCAATGCTTGCAGCGTATGCAATGCACGGACAAGGGGATCATGCTATTGCACTTTTATCGCTGATGCAAAAGAGCTGTATCCAACTTGATTCTGTGTCATTCATCAGTCTCTTGTCTGCCTGCAGACATGCGGGTTTGATAAAAGAAGGAAAGGAAGTTTTTCAGGTCATGTGTGAAAAGCACCATCTTGAACCAGAGTTGGAACATTATGCTTGCATGGTAGATCTTCTAGGCCGTGCTGGTTTCTTTGATGAGGCTTTAGATTTGATTAATACGATGCCCATGGAGCCTGATGCCGGAGTCTGGGGAGCATTATTAGGGGCATGCAGGATGCATTCAAATGCAAAGTTGGGAGAAGTTGCGTTGAGTCATCTTGTTAACCTTGAGCCTACAAATGCAACCAATTACATAGCTTTATCAGATATACATGCACATTCTGCTAGATGGGGTGATGCTTGCAAGACAAGATCAAAGATGAAGAGCTCTGGGTCGAAGAAAATGCCAGGATGTAGTTGGGTAGAGGTCCAAAACAGGGTTCATACGCTACAGGCTGGTGACTATAACTACCCCCAACTTGGAACAGAGAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

883

Amino Acids

97.41

Weight (kDa)

6.0

Isoelectric Point (pI)

37.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	72 - 119	8.3e-09	PPR repeat family
PPR_1	PF12854	138 - 170	4.4e-06	PPR repeat
PPR_2	PF13041	173 - 210	2.9e-06	PPR repeat family
PPR_2	PF13041	477 - 524	9.6e-07	PPR repeat family
PPR_3	PF13812	576 - 625	2.3e-06	Pentatricopeptide repeat domain
PPR_2	PF13041	579 - 623	4.4e-12	PPR repeat family
PPR	PF01535	582 - 612	7.1e-07	PPR repeat
PPR_2	PF13041	681 - 727	9.2e-08	PPR repeat family
E_motif	PF20431	798 - 860	5.6e-19	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011932)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39620 AT2G40720
fragaria_vesca	FvH4_7g21891
malus_domestica	MD07G1193300.v1.1
prunus_persica	Prupe.2G231000_v2.0.a1
pyrus_communis	pycom07g18250
rosa_chinensis	RchiOBHm_Chr1g0366141
rosa_laevigata	RLG00000027363
rosa_multiflora	Rmu_co8484073.1_g000001 Rmu_sc0003987.1_g000001
rosa_roxburghii	Rroxscaffold_4G00290450 Rroxscaffold_4G00290460
rosa_rugosa	Rorug01G0327800 Rorug01G0327900
rosa_samantha	Rh1AG335900 Rh1BG297300 Rh1CG313300 Rh1DG329100
rosa_wichuraiana	Rw1G029800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1457, 1622
Acc16I	TGCGCA	1 cut(s)	207
AccI	GTMKAC	2 cut(s)	329, 1485
AccII	CGCG	2 cut(s)	187, 863
AciI	CCGC	4 cut(s)	488, 854, 1992, 2189
AclWI	GGATC	3 cut(s)	563, 576, 2103
AcsI	RAATTY	4 cut(s)	151, 266, 625, 1289
AcuI	CTGAAG	2 cut(s)	368, 1203
AfaI	GTAC	3 cut(s)	290, 860, 1600
AfiI	CCNNNNNNNGG	5 cut(s)	1541, 2354, 2361, 2590, 2633
AflIII	ACRYGT	1 cut(s)	1977
AhdI	GACNNNNNGTC	1 cut(s)	1696
AjiI	CACGTC	1 cut(s)	1443
AjnI	CCWGG	3 cut(s)	1748, 1790, 2560
AjuI	GAANNNNNNNTTGG	2 cut(s)	2577, 2609
Alw21I	GWGCWC	4 cut(s)	250, 396, 955, 2543
Alw26I	GTCTC	8 cut(s)	112, 119, 1077, 1108, 1200, 1369, 1567, 2171
Alw44I	GTGCAC	2 cut(s)	392, 951
AlwI	GGATC	3 cut(s)	563, 576, 2103
AoxI	GGCC	3 cut(s)	46, 1323, 2290
ApaLI	GTGCAC	2 cut(s)	392, 951
ApeKI	GCWGC	6 cut(s)	17, 362, 962, 1262, 1889, 2069
ApoI	RAATTY	4 cut(s)	151, 266, 625, 1289
AseI	ATTAAT	3 cut(s)	101, 1730, 2328
Asp700I	GAANNNNTTC	2 cut(s)	8, 2217
AspLEI	GCGC	2 cut(s)	189, 208
AspS9I	GGNCC	2 cut(s)	441, 2581
AsuC2I	CCSGG	1 cut(s)	550
AsuHPI	GGTGA	8 cut(s)	490, 634, 827, 1490, 1700, 1805, 2519, 2624
AsuII	TTCGAA	1 cut(s)	737
AvaII	GGWCC	2 cut(s)	441, 2581
AxyI	CCTNAGG	1 cut(s)	573
BaeGI	GKGCMC	2 cut(s)	396, 955
BaeI	ACNNNNGTAYC	2 cut(s)	850, 883
BamHI	GGATCC	1 cut(s)	568
BanII	GRGCYC	2 cut(s)	250, 2543
Bbv12I	GWGCWC	4 cut(s)	250, 396, 955, 2543
BbvI	GCAGC	6 cut(s)	29, 349, 949, 1249, 1901, 2081
BceAI	ACGGC	1 cut(s)	2277
BcgI	CGANNNNNNTGC	6 cut(s)	778, 812, 2097, 2131, 2539, 2573
BciT130I	CCWGG	3 cut(s)	1750, 1792, 2562
BciVI	GTATCC	3 cut(s)	1756, 1763, 2147
BclI	TGATCA	1 cut(s)	240
BcnI	CCSGG	1 cut(s)	550
BcoDI	GTCTC	8 cut(s)	112, 119, 1077, 1108, 1200, 1369, 1567, 2171
BfaI	CTAG	6 cut(s)	314, 663, 1361, 1886, 2288, 2499
BfmI	CTRYAG	4 cut(s)	966, 1872, 2179, 2603
BfuI	GTATCC	3 cut(s)	1756, 1763, 2147
BglI	GCCNNNNNGGC	1 cut(s)	350
BglII	AGATCT	1 cut(s)	2281
BisI	GCNGC	6 cut(s)	18, 363, 963, 1263, 1890, 2070
BlsI	GCNGC	6 cut(s)	19, 364, 964, 1264, 1891, 2071
Bme1390I	CCNGG	4 cut(s)	550, 1750, 1792, 2562
Bme18I	GGWCC	2 cut(s)	441, 2581
BmeRI	GACNNNNNGTC	1 cut(s)	1696
BmgBI	CACGTC	1 cut(s)	1443
BmgT120I	GGNCC	2 cut(s)	441, 2581
BmiI	GGNNCC	4 cut(s)	442, 570, 651, 2346
BmrFI	CCNGG	4 cut(s)	550, 1750, 1792, 2562
BmrI	ACTGGG	1 cut(s)	1359
BmuI	ACTGGG	1 cut(s)	1359
Bpu14I	TTCGAA	1 cut(s)	737
BpuEI	CTTGAG	3 cut(s)	264, 2021, 2462
BpuMI	CCSGG	1 cut(s)	550
BsaBI	GATNNNNATC	1 cut(s)	1590
BsaI	GGTCTC	2 cut(s)	119, 1567
BsaJI	CCNNGG	2 cut(s)	1791, 2340
Bsc4I	CCNNNNNNNGG	5 cut(s)	1541, 2354, 2361, 2590, 2633
Bse1I	ACTGG	3 cut(s)	444, 1168, 1354
Bse21I	CCTNAGG	1 cut(s)	573
Bse3DI	GCAATG	4 cut(s)	611, 1306, 2067, 2085
Bse8I	GATNNNNATC	1 cut(s)	1590
BseBI	CCWGG	3 cut(s)	1750, 1792, 2562
BseDI	CCNNGG	2 cut(s)	1791, 2340
BseGI	GGATG	9 cut(s)	606, 621, 784, 878, 1254, 1513, 1863, 2394, 2570
BseJI	GATNNNNATC	1 cut(s)	1590
BseLI	CCNNNNNNNGG	5 cut(s)	1541, 2354, 2361, 2590, 2633
BseMI	GCAATG	4 cut(s)	611, 1306, 2067, 2085
BseMII	CTCAG	2 cut(s)	123, 204
BseNI	ACTGG	3 cut(s)	444, 1168, 1354
BseSI	GKGCMC	2 cut(s)	396, 955
BseXI	GCAGC	6 cut(s)	29, 349, 949, 1249, 1901, 2081
BsgI	GTGCAG	2 cut(s)	827, 1131
Bsh1236I	CGCG	2 cut(s)	187, 863
BshFI	GGCC	3 cut(s)	48, 1325, 2292
BsiHKAI	GWGCWC	4 cut(s)	250, 396, 955, 2543
BsiSI	CCGG	2 cut(s)	549, 2355
BslFI	GGGAC	4 cut(s)	61, 454, 856, 1366
BslI	CCNNNNNNNGG	5 cut(s)	1541, 2354, 2361, 2590, 2633
BsmAI	GTCTC	8 cut(s)	112, 119, 1077, 1108, 1200, 1369, 1567, 2171
BsmFI	GGGAC	4 cut(s)	61, 454, 856, 1366
BsmI	GAATGC	4 cut(s)	513, 1425, 1453, 2392
BsnI	GGCC	3 cut(s)	48, 1325, 2292
Bso31I	GGTCTC	2 cut(s)	119, 1567
Bsp119I	TTCGAA	1 cut(s)	737
Bsp1286I	GDGCHC	4 cut(s)	250, 396, 955, 2543
Bsp143I	GATC	7 cut(s)	240, 568, 1585, 2002, 2095, 2281, 2525
Bsp19I	CCATGG	1 cut(s)	2340
BspACI	CCGC	4 cut(s)	488, 854, 1992, 2189
BspANI	GGCC	3 cut(s)	48, 1325, 2292
BspCNI	CTCAG	2 cut(s)	122, 203
BspFNI	CGCG	2 cut(s)	187, 863
BspHI	TCATGA	1 cut(s)	945
BspLI	GGNNCC	4 cut(s)	442, 570, 651, 2346
BspMAI	CTGCAG	2 cut(s)	1876, 2183
BspPI	GGATC	3 cut(s)	563, 576, 2103
BspQI	GCTCTTC	1 cut(s)	2531
BspT104I	TTCGAA	1 cut(s)	737
BspTNI	GGTCTC	2 cut(s)	119, 1567
BsrDI	GCAATG	4 cut(s)	611, 1306, 2067, 2085
BsrI	ACTGG	3 cut(s)	444, 1168, 1354
BssECI	CCNNGG	2 cut(s)	1791, 2340
BssMI	GATC	7 cut(s)	240, 568, 1585, 2002, 2095, 2281, 2525
BssNAI	GTATAC	1 cut(s)	330
BssT1I	CCWWGG	1 cut(s)	2340
Bst1107I	GTATAC	1 cut(s)	330
Bst2UI	CCWGG	3 cut(s)	1750, 1792, 2562
Bst4CI	ACNGT	2 cut(s)	398, 1835
Bst6I	CTCTTC	4 cut(s)	61, 166, 2019, 2531
BstAPI	GCANNNNNTGC	6 cut(s)	536, 1308, 1677, 2066, 2075, 2495
BstBI	TTCGAA	1 cut(s)	737
BstC8I	GCNNGC	8 cut(s)	355, 787, 1921, 2067, 2179, 2272, 2383, 2515
BstDEI	CTNAG	4 cut(s)	109, 190, 573, 1021
BstDSI	CCRYGG	1 cut(s)	2340
BstENI	CCTNNNNNAGG	1 cut(s)	1539
BstF5I	GGATG	9 cut(s)	606, 621, 784, 878, 1254, 1513, 1863, 2394, 2570
BstFNI	CGCG	2 cut(s)	187, 863
BstHHI	GCGC	2 cut(s)	189, 208
BstKTI	GATC	7 cut(s)	243, 571, 1588, 2005, 2098, 2284, 2528
BstMAI	GTCTC	8 cut(s)	112, 119, 1077, 1108, 1200, 1369, 1567, 2171
BstMBI	GATC	7 cut(s)	240, 568, 1585, 2002, 2095, 2281, 2525
BstNI	CCWGG	3 cut(s)	1750, 1792, 2562
BstNSI	RCATGY	8 cut(s)	534, 1269, 1675, 1777, 1981, 2189, 2385, 2489
BstSCI	CCNGG	4 cut(s)	548, 1748, 1790, 2560
BstSFI	CTRYAG	4 cut(s)	966, 1872, 2179, 2603
BstSLI	GKGCMC	2 cut(s)	396, 955
BstUI	CGCG	2 cut(s)	187, 863
BstV1I	GCAGC	6 cut(s)	29, 349, 949, 1249, 1901, 2081
BstX2I	RGATCY	2 cut(s)	568, 2281
BstYI	RGATCY	2 cut(s)	568, 2281
BstZ17I	GTATAC	1 cut(s)	330
Bsu36I	CCTNAGG	1 cut(s)	573
BsuI	GTATCC	3 cut(s)	1756, 1763, 2147
BsuRI	GGCC	3 cut(s)	48, 1325, 2292
BtgI	CCRYGG	1 cut(s)	2340
BtrI	CACGTC	1 cut(s)	1443
BtsCI	GGATG	9 cut(s)	606, 621, 784, 878, 1254, 1513, 1863, 2394, 2570
BtsI	GCAGTG	4 cut(s)	357, 588, 663, 1881
BtsIMutI	CAGTG	5 cut(s)	134, 357, 588, 663, 1881
Cac8I	GCNNGC	8 cut(s)	355, 787, 1921, 2067, 2179, 2272, 2383, 2515
CciI	TCATGA	1 cut(s)	945
CfoI	GCGC	2 cut(s)	189, 208
Cfr13I	GGNCC	2 cut(s)	441, 2581
CseI	GACGC	1 cut(s)	1652
Csp6I	GTAC	3 cut(s)	289, 859, 1599
CspCI	CAANNNNNGTGG	2 cut(s)	1216, 1251
CviQI	GTAC	3 cut(s)	289, 859, 1599
DdeI	CTNAG	4 cut(s)	109, 190, 573, 1021
DpnI	GATC	7 cut(s)	242, 570, 1587, 2004, 2097, 2283, 2527
DpnII	GATC	7 cut(s)	240, 568, 1585, 2002, 2095, 2281, 2525
DraI	TTTAAA	1 cut(s)	376
DriI	GACNNNNNGTC	1 cut(s)	1696
Eam1104I	CTCTTC	4 cut(s)	61, 166, 2019, 2531
Eam1105I	GACNNNNNGTC	1 cut(s)	1696
EarI	CTCTTC	4 cut(s)	61, 166, 2019, 2531
Ecl136II	GAGCTC	2 cut(s)	248, 2541
Eco130I	CCWWGG	1 cut(s)	2340
Eco24I	GRGCYC	2 cut(s)	250, 2543
Eco31I	GGTCTC	2 cut(s)	119, 1567
Eco47I	GGWCC	2 cut(s)	441, 2581
Eco53kI	GAGCTC	2 cut(s)	248, 2541
Eco57I	CTGAAG	2 cut(s)	368, 1203
Eco81I	CCTNAGG	1 cut(s)	573
EcoICRI	GAGCTC	2 cut(s)	248, 2541
EcoNI	CCTNNNNNAGG	1 cut(s)	1539
EcoRI	GAATTC	1 cut(s)	266
EcoRII	CCWGG	3 cut(s)	1748, 1790, 2560
EcoT14I	CCWWGG	1 cut(s)	2340
EcoT22I	ATGCAT	2 cut(s)	1465, 2394
EcoT38I	GRGCYC	2 cut(s)	250, 2543
ErhI	CCWWGG	1 cut(s)	2340
FalI	AAGNNNNNCTT	2 cut(s)	317, 349
FaqI	GGGAC	4 cut(s)	61, 454, 856, 1366
FauI	CCCGC	3 cut(s)	481, 847, 2182
FbaI	TGATCA	1 cut(s)	240
FblI	GTMKAC	2 cut(s)	329, 1485
Fnu4HI	GCNGC	6 cut(s)	18, 363, 963, 1263, 1890, 2070
FokI	GGATG	9 cut(s)	613, 628, 791, 885, 1241, 1520, 1850, 2401, 2577
FriOI	GRGCYC	2 cut(s)	250, 2543
Fsp4HI	GCNGC	6 cut(s)	18, 363, 963, 1263, 1890, 2070
FspBI	CTAG	6 cut(s)	314, 663, 1361, 1886, 2288, 2499
FspI	TGCGCA	1 cut(s)	207
GlaI	GCGC	2 cut(s)	188, 207
GluI	GCNGC	6 cut(s)	18, 363, 963, 1263, 1890, 2070
HaeIII	GGCC	3 cut(s)	48, 1325, 2292
HapII	CCGG	2 cut(s)	549, 2355
HgaI	GACGC	1 cut(s)	1652
HhaI	GCGC	2 cut(s)	189, 208
Hin6I	GCGC	2 cut(s)	187, 206
HinP1I	GCGC	2 cut(s)	187, 206
HincII	GTYRAC	1 cut(s)	2437
HindII	GTYRAC	1 cut(s)	2437
HinfI	GANTC	8 cut(s)	680, 1000, 1031, 1334, 1386, 2147, 2358, 2425
HpaI	GTTAAC	1 cut(s)	2437
HpaII	CCGG	2 cut(s)	549, 2355
HphI	GGTGA	8 cut(s)	490, 634, 827, 1490, 1700, 1805, 2519, 2624
Hpy166II	GTNNAC	5 cut(s)	330, 394, 953, 1486, 2437
Hpy188I	TCNGA	8 cut(s)	245, 450, 730, 1036, 1287, 1339, 2011, 2479
Hpy8I	GTNNAC	5 cut(s)	330, 394, 953, 1486, 2437
HpyAV	CCTTC	6 cut(s)	138, 175, 343, 1087, 1877, 2198
HpyCH4III	ACNGT	2 cut(s)	398, 1835
HpyCH4IV	ACGT	2 cut(s)	522, 1442
HpyF3I	CTNAG	4 cut(s)	109, 190, 573, 1021
HpySE526I	ACGT	2 cut(s)	522, 1442
HspAI	GCGC	2 cut(s)	187, 206
Ksp22I	TGATCA	1 cut(s)	240
KspAI	GTTAAC	1 cut(s)	2437
Kzo9I	GATC	7 cut(s)	240, 568, 1585, 2002, 2095, 2281, 2525
LguI	GCTCTTC	1 cut(s)	2531
LmnI	GCTCC	3 cut(s)	1273, 2344, 2366
Lsp1109I	GCAGC	6 cut(s)	29, 349, 949, 1249, 1901, 2081
MaeI	CTAG	6 cut(s)	314, 663, 1361, 1886, 2288, 2499
MaeII	ACGT	2 cut(s)	522, 1442
MaeIII	GTNAC	4 cut(s)	1438, 1688, 1849, 2612
MalI	GATC	7 cut(s)	242, 570, 1587, 2004, 2097, 2283, 2527
MboI	GATC	7 cut(s)	240, 568, 1585, 2002, 2095, 2281, 2525
MboII	GAAGA	6 cut(s)	48, 153, 2036, 2276, 2548, 2563
MfeI	CAATTG	1 cut(s)	1103
MflI	RGATCY	2 cut(s)	568, 2281
MhlI	GDGCHC	4 cut(s)	250, 396, 955, 2543
MlyI	GAGTC	2 cut(s)	2367, 2434
MmeI	TCCRAC	4 cut(s)	142, 1485, 2164, 2238
Mph1103I	ATGCAT	2 cut(s)	1465, 2394
MroXI	GAANNNNTTC	2 cut(s)	8, 2217
MslI	CAYNNNNRTG	4 cut(s)	702, 1008, 1311, 2397
MspA1I	CMGCKG	1 cut(s)	1703
MspI	CCGG	2 cut(s)	549, 2355
MspR9I	CCNGG	4 cut(s)	550, 1750, 1792, 2562
MunI	CAATTG	1 cut(s)	1103
Mva1269I	GAATGC	4 cut(s)	513, 1425, 1453, 2392
MvaI	CCWGG	3 cut(s)	1750, 1792, 2562
MvnI	CGCG	2 cut(s)	187, 863
NciI	CCSGG	1 cut(s)	550
NcoI	CCATGG	1 cut(s)	2340
NdeII	GATC	7 cut(s)	240, 568, 1585, 2002, 2095, 2281, 2525
NlaIV	GGNNCC	4 cut(s)	442, 570, 651, 2346
NmeAIII	GCCGAG	1 cut(s)	1544
NmuCI	GTSAC	4 cut(s)	1438, 1688, 1849, 2612
NsbI	TGCGCA	1 cut(s)	207
NsiI	ATGCAT	2 cut(s)	1465, 2394
NspI	RCATGY	8 cut(s)	534, 1269, 1675, 1777, 1981, 2189, 2385, 2489
NspV	TTCGAA	1 cut(s)	737
PaeI	GCATGC	1 cut(s)	2385
PagI	TCATGA	1 cut(s)	945
PciI	ACATGT	1 cut(s)	1977
PciSI	GCTCTTC	1 cut(s)	2531
PctI	GAATGC	4 cut(s)	513, 1425, 1453, 2392
PdmI	GAANNNNTTC	2 cut(s)	8, 2217
PfeI	GAWTC	6 cut(s)	680, 1000, 1031, 1334, 1386, 2147
PfoI	TCCNGGA	1 cut(s)	1748
PkrI	GCNGC	6 cut(s)	19, 364, 964, 1264, 1891, 2071
PleI	GAGTC	2 cut(s)	2366, 2433
PpsI	GAGTC	2 cut(s)	2366, 2433
PscI	ACATGT	1 cut(s)	1977
PshBI	ATTAAT	3 cut(s)	101, 1730, 2328
PsiI	TTATAA	2 cut(s)	1457, 1622
Psp124BI	GAGCTC	2 cut(s)	250, 2543
Psp6I	CCWGG	3 cut(s)	1748, 1790, 2560
PspGI	CCWGG	3 cut(s)	1748, 1790, 2560
PspN4I	GGNNCC	4 cut(s)	442, 570, 651, 2346
PspPI	GGNCC	2 cut(s)	441, 2581
PstI	CTGCAG	2 cut(s)	1876, 2183
PsuI	RGATCY	2 cut(s)	568, 2281
PvuII	CAGCTG	1 cut(s)	1703
RsaI	GTAC	3 cut(s)	290, 860, 1600
RsaNI	GTAC	3 cut(s)	289, 859, 1599
RseI	CAYNNNNRTG	4 cut(s)	702, 1008, 1311, 2397
SacI	GAGCTC	2 cut(s)	250, 2543
SapI	GCTCTTC	1 cut(s)	2531
SatI	GCNGC	6 cut(s)	18, 363, 963, 1263, 1890, 2070
Sau3AI	GATC	7 cut(s)	240, 568, 1585, 2002, 2095, 2281, 2525
Sau96I	GGNCC	2 cut(s)	441, 2581
SchI	GAGTC	2 cut(s)	2367, 2434
ScrFI	CCNGG	4 cut(s)	550, 1750, 1792, 2562
SduI	GDGCHC	4 cut(s)	250, 396, 955, 2543
SfcI	CTRYAG	4 cut(s)	966, 1872, 2179, 2603
SfuI	TTCGAA	1 cut(s)	737
SinI	GGWCC	2 cut(s)	441, 2581
SmiMI	CAYNNNNRTG	4 cut(s)	702, 1008, 1311, 2397
SmlI	CTYRAG	3 cut(s)	279, 2036, 2441
SmoI	CTYRAG	3 cut(s)	279, 2036, 2441
SphI	GCATGC	1 cut(s)	2385
SsiI	CCGC	4 cut(s)	488, 854, 1992, 2189
SspMI	CTAG	6 cut(s)	314, 663, 1361, 1886, 2288, 2499
SstI	GAGCTC	2 cut(s)	250, 2543
StyD4I	CCNGG	4 cut(s)	548, 1748, 1790, 2560
StyI	CCWWGG	1 cut(s)	2340
TaaI	ACNGT	2 cut(s)	398, 1835
TaiI	ACGT	2 cut(s)	525, 1445
TaqI	TCGA	5 cut(s)	737, 798, 1204, 2001, 2549
TfiI	GAWTC	6 cut(s)	680, 1000, 1031, 1334, 1386, 2147
TscAI	CASTG	5 cut(s)	141, 364, 588, 663, 1881
TseFI	GTSAC	4 cut(s)	1438, 1688, 1849, 2612
TseI	GCWGC	6 cut(s)	17, 362, 962, 1262, 1889, 2069
Tsp45I	GTSAC	4 cut(s)	1438, 1688, 1849, 2612
TspGWI	ACGGA	1 cut(s)	2100
TspRI	CASTG	5 cut(s)	141, 364, 588, 663, 1881
VneI	GTGCAC	2 cut(s)	392, 951
VpaK11BI	GGWCC	2 cut(s)	441, 2581
VspI	ATTAAT	3 cut(s)	101, 1730, 2328
XagI	CCTNNNNNAGG	1 cut(s)	1539
XapI	RAATTY	4 cut(s)	151, 266, 625, 1289
XbaI	TCTAGA	2 cut(s)	313, 662
XceI	RCATGY	8 cut(s)	534, 1269, 1675, 1777, 1981, 2189, 2385, 2489
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2568
XmiI	GTMKAC	2 cut(s)	329, 1485
XmnI	GAANNNNTTC	2 cut(s)	8, 2217
XspI	CTAG	6 cut(s)	314, 663, 1361, 1886, 2288, 2499
Zsp2I	ATGCAT	2 cut(s)	1465, 2394

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.