Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0008030

Physical Location & Seq

Genomic Coordinates Forward (+)

17812115 .. 17813695

Gene Structure 1581 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g22601.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGCCGATTATAGACAGCTTGGAAGACAGCCAGAGACACTTCCCAAGTTCCCATCATGAGAACTTACCAACTCAAAGTGTGAACATGAGGAGGTACAGCCCAGAGTACTACAGTCCTCCGAGGAGGAGCTACGGCGGCGGCGGCGGAGGCCGGGGGAGAAGCCCGCCGAGGAAGCGCGGCAGGGAGCAGAATAATGGAAGCCTGTTGGTTCGGAACATTCCTCTGGATTGCAGGCCGGAAGAGCTGAGGACTCCCTTTGAGAGATTTGGGCTTGTTCGGGATGTCTACATTCCCAAGGATTACTACACTGGGGGGTGTGTTGGTTTGAACTTTGAAGTTAAAACAAGACCAAGCCCCACTTTTGATGAAGGCCTACTGTTTATCATTGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000244 GO:0000245 GO:0000375 GO:0000377 GO:0000381 GO:0000387 GO:0000395 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006376 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0008380 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010629 GO:0016043 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0019219 GO:0019222 GO:0019904 GO:0022607 GO:0022613 GO:0022618 GO:0031323 GO:0031324 GO:0031974 GO:0031981 GO:0033119 GO:0034622 GO:0034641 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043484 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045292 GO:0045934 GO:0046483 GO:0048024 GO:0048025 GO:0048519 GO:0048523 GO:0050684 GO:0050686 GO:0050733 GO:0050789 GO:0050794 GO:0050896 GO:0051082 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065003 GO:0065007 GO:0070013 GO:0071704 GO:0071826 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1903311 GO:1903312

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

131

Amino Acids

14.83

Weight (kDa)

9.3

Isoelectric Point (pI)

80.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008030)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55460
fragaria_vesca	FvH4_7g22601 FvH4_7g22602
malus_domestica	MD01G1135000.v1.1 MD07G1199700.v1.1
prunus_persica	Prupe.2G236400_v2.0.a1 Prupe.2G236400_v2.0.a1 Prupe.2G236400_v2.0.a1 Prupe.2G236400_v2.0.a1
pyrus_communis	pycom01g15570 pycom07g18650
rosa_chinensis	RchiOBHm_Chr1g0367721
rosa_laevigata	RLG00000027268
rosa_multiflora	Rmu_co8328167.1_g000001 Rmu_sc0008470.1_g000003 Rmu_sc0033554.1_g000001
rosa_roxburghii	Rroxscaffold_4G00289280
rosa_rugosa	Rorug01G0336200
rosa_samantha	Rh1AG343300 Rh1BG305000 Rh1CG320700 Rh1DG337300 Rh6BG013900
rosa_wichuraiana	Rw1G030550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	285
AccII	CGCG	1 cut(s)	177
AciI	CCGC	6 cut(s)	135, 138, 141, 144, 164, 177
AfaI	GTAC	2 cut(s)	95, 107
AgsI	TTSAA	2 cut(s)	328, 335
AluBI	AGCT	3 cut(s)	18, 129, 244
AluI	AGCT	3 cut(s)	18, 129, 244
Alw26I	GTCTC	1 cut(s)	28
AoxI	GGCC	3 cut(s)	148, 233, 370
AspLEI	GCGC	1 cut(s)	177
AsuC2I	CCSGG	1 cut(s)	152
BbsI	GAAGAC	1 cut(s)	30
BbvCI	CCTCAGC	1 cut(s)	245
BccI	CCATC	1 cut(s)	60
BceAI	ACGGC	1 cut(s)	148
BcnI	CCSGG	1 cut(s)	152
BcoDI	GTCTC	1 cut(s)	28
BfmI	CTRYAG	1 cut(s)	109
BisI	GCNGC	4 cut(s)	136, 139, 142, 178
BlsI	GCNGC	4 cut(s)	137, 140, 143, 179
BmcAI	AGTACT	1 cut(s)	107
Bme1390I	CCNGG	1 cut(s)	152
BmrFI	CCNGG	1 cut(s)	152
BmrI	ACTGGG	1 cut(s)	318
BmuI	ACTGGG	1 cut(s)	318
BpiI	GAAGAC	1 cut(s)	30
Bpu10I	CCTNAGC	1 cut(s)	245
BpuMI	CCSGG	1 cut(s)	152
BsaJI	CCNNGG	4 cut(s)	119, 151, 167, 294
Bse1I	ACTGG	1 cut(s)	313
Bse3DI	GCAATG	1 cut(s)	384
BseDI	CCNNGG	4 cut(s)	119, 151, 167, 294
BseGI	GGATG	1 cut(s)	286
BseMI	GCAATG	1 cut(s)	384
BseMII	CTCAG	1 cut(s)	236
BseNI	ACTGG	1 cut(s)	313
BseRI	GAGGAG	3 cut(s)	103, 136, 139
Bsh1236I	CGCG	1 cut(s)	177
BshFI	GGCC	3 cut(s)	150, 235, 372
BsiSI	CCGG	2 cut(s)	151, 236
BsmAI	GTCTC	1 cut(s)	28
BsnI	GGCC	3 cut(s)	150, 235, 372
BspACI	CCGC	6 cut(s)	135, 138, 141, 144, 164, 177
BspANI	GGCC	3 cut(s)	150, 235, 372
BspCNI	CTCAG	1 cut(s)	237
BspFNI	CGCG	1 cut(s)	177
BspHI	TCATGA	1 cut(s)	55
BspQI	GCTCTTC	1 cut(s)	234
BsrDI	GCAATG	1 cut(s)	384
BsrI	ACTGG	1 cut(s)	313
BssECI	CCNNGG	4 cut(s)	119, 151, 167, 294
BssT1I	CCWWGG	1 cut(s)	294
Bst4CI	ACNGT	2 cut(s)	113, 378
Bst6I	CTCTTC	1 cut(s)	234
BstC8I	GCNNGC	2 cut(s)	164, 233
BstDEI	CTNAG	1 cut(s)	245
BstF5I	GGATG	1 cut(s)	286
BstFNI	CGCG	1 cut(s)	177
BstHHI	GCGC	1 cut(s)	177
BstMAI	GTCTC	1 cut(s)	28
BstMWI	GCNNNNNNNGC	5 cut(s)	135, 141, 147, 172, 241
BstSCI	CCNGG	1 cut(s)	150
BstSFI	CTRYAG	1 cut(s)	109
BstUI	CGCG	1 cut(s)	177
BstV2I	GAAGAC	1 cut(s)	30
BsuRI	GGCC	3 cut(s)	150, 235, 372
BtsCI	GGATG	1 cut(s)	286
BtsIMutI	CAGTG	1 cut(s)	306
Cac8I	GCNNGC	2 cut(s)	164, 233
CciI	TCATGA	1 cut(s)	55
CfoI	GCGC	1 cut(s)	177
Csp6I	GTAC	2 cut(s)	94, 106
CviAII	CATG	2 cut(s)	56, 85
CviQI	GTAC	2 cut(s)	94, 106
DdeI	CTNAG	1 cut(s)	245
Eam1104I	CTCTTC	1 cut(s)	234
EarI	CTCTTC	1 cut(s)	234
EciI	GGCGGA	1 cut(s)	159
Eco130I	CCWWGG	1 cut(s)	294
Eco147I	AGGCCT	1 cut(s)	372
EcoT14I	CCWWGG	1 cut(s)	294
ErhI	CCWWGG	1 cut(s)	294
FaeI	CATG	2 cut(s)	59, 88
FaiI	YATR	3 cut(s)	11, 57, 86
FalI	AAGNNNNNCTT	2 cut(s)	343, 375
FatI	CATG	2 cut(s)	55, 84
FauI	CCCGC	1 cut(s)	171
FblI	GTMKAC	1 cut(s)	285
Fnu4HI	GCNGC	4 cut(s)	136, 139, 142, 178
FokI	GGATG	1 cut(s)	293
Fsp4HI	GCNGC	4 cut(s)	136, 139, 142, 178
GlaI	GCGC	1 cut(s)	176
GluI	GCNGC	4 cut(s)	136, 139, 142, 178
HaeIII	GGCC	3 cut(s)	150, 235, 372
HapII	CCGG	2 cut(s)	151, 236
HhaI	GCGC	1 cut(s)	177
Hin1II	CATG	2 cut(s)	59, 88
Hin6I	GCGC	1 cut(s)	175
HinP1I	GCGC	1 cut(s)	175
HinfI	GANTC	1 cut(s)	250
HpaII	CCGG	2 cut(s)	151, 236
Hpy166II	GTNNAC	2 cut(s)	82, 286
Hpy188I	TCNGA	2 cut(s)	120, 213
Hpy188III	TCNNGA	3 cut(s)	56, 224, 278
Hpy8I	GTNNAC	2 cut(s)	82, 286
HpyAV	CCTTC	1 cut(s)	362
HpyCH4III	ACNGT	2 cut(s)	113, 378
HpyCH4V	TGCA	1 cut(s)	231
HpyF10VI	GCNNNNNNNGC	5 cut(s)	135, 141, 147, 172, 241
HpyF3I	CTNAG	1 cut(s)	245
Hsp92II	CATG	2 cut(s)	59, 88
HspAI	GCGC	1 cut(s)	175
LguI	GCTCTTC	1 cut(s)	234
LmnI	GCTCC	2 cut(s)	126, 184
LpnPI	CCDG	9 cut(s)	44, 114, 164, 166, 209, 215, 217, 249, 294
MboII	GAAGA	2 cut(s)	35, 251
MlyI	GAGTC	1 cut(s)	244
MnlI	CCTC	9 cut(s)	81, 84, 114, 117, 126, 140, 162, 231, 240
MseI	TTAA	1 cut(s)	339
MspI	CCGG	2 cut(s)	151, 236
MspR9I	CCNGG	1 cut(s)	152
MvnI	CGCG	1 cut(s)	177
MwoI	GCNNNNNNNGC	5 cut(s)	135, 141, 147, 172, 241
NciI	CCSGG	1 cut(s)	152
NlaIII	CATG	2 cut(s)	59, 88
NmeAIII	GCCGAG	1 cut(s)	192
PagI	TCATGA	1 cut(s)	55
PceI	AGGCCT	1 cut(s)	372
PciSI	GCTCTTC	1 cut(s)	234
PkrI	GCNGC	4 cut(s)	137, 140, 143, 179
PleI	GAGTC	1 cut(s)	244
PpsI	GAGTC	1 cut(s)	244
RsaI	GTAC	2 cut(s)	95, 107
RsaNI	GTAC	2 cut(s)	94, 106
SapI	GCTCTTC	1 cut(s)	234
SaqAI	TTAA	1 cut(s)	339
SatI	GCNGC	4 cut(s)	136, 139, 142, 178
ScaI	AGTACT	1 cut(s)	107
SchI	GAGTC	1 cut(s)	244
ScrFI	CCNGG	1 cut(s)	152
SetI	ASST	4 cut(s)	20, 95, 131, 246
SfcI	CTRYAG	1 cut(s)	109
SseBI	AGGCCT	1 cut(s)	372
SsiI	CCGC	6 cut(s)	135, 138, 141, 144, 164, 177
StuI	AGGCCT	1 cut(s)	372
StyD4I	CCNGG	1 cut(s)	150
StyI	CCWWGG	1 cut(s)	294
TaaI	ACNGT	2 cut(s)	113, 378
TatI	WGTACW	1 cut(s)	105
TauI	GCSGC	4 cut(s)	138, 141, 144, 180
Tru1I	TTAA	1 cut(s)	339
Tru9I	TTAA	1 cut(s)	339
TscAI	CASTG	1 cut(s)	313
TspDTI	ATGAA	1 cut(s)	381
TspRI	CASTG	1 cut(s)	313
XmiI	GTMKAC	1 cut(s)	285
ZrmI	AGTACT	1 cut(s)	107

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.