Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0008030

Physical Location & Seq

Genomic Coordinates Forward (+)

25797132 .. 25800354

Gene Structure 3223 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G236400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

ATGAGGAGGTACAGCCCACAGTACTATAGTCCTCCAAGGAGGAGCTATGGCGGAGGCGGCGGCGGAGGGGGACGAGGAAGAAGCCCCCCAAGGAGGCGCAAGGAGCAGAATAGTGGAAGCCTTTTGGTCCGGAACATTCCTCTTGATTGCAGACCTGAAGAGCTACGAGTTCCCTTTGAAAGATATGGGCTTGTTCGGGATGTCTACATTCCCAAGGACTACTACACTGGGGAACCTCGGGGATTTGCATTTGTGCAATTTGTGGATTCTTATGAGGCTGCAGAGGCTCAGTATCATATGAACGGGAAAATTTTTGCTGGGAGGGAGATATCTGTGGTTGTTGCTGCAGAGACAAGGAAAAGGCCAGAGGAGATGCGTCAAAGGACTAGGGTTAGAGGGCCATCAGAGCATGGAGGAAGGCGATCGTCTTATTATGGACGTTCTCGTTCTCGTTCACGTTCGCCACATTATCCATCAAGTTCTAGAAGCCGATACCGCTCAAGGTCCTATTCACCTGCTCCAAGACGCCGTGGTGACTCTGTTTCCCCAAGTAGAAGGCGCAGAGACCACCCAAGATCACCACGTGATCTTCCACTAGAGCGAGATGCTGATCATGATCGCAGGCCATATTCTCCAGGTTATGACAATGTTGCTGGGCCAAATGAAAATGATGGATATGAAAAGAAACCTATGCACGAGGATAAGGATGGAAGAGGTCATTGGAGGTCTCCTAGTCCTGGTAGAGCATCCAGATCACCATCTGGATCTAGGTCCAGATCTGCTGAGTTATCACCTAGGCGCAGCAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000244 GO:0000245 GO:0000375 GO:0000377 GO:0000381 GO:0000387 GO:0000395 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006376 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0008380 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010629 GO:0016043 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0019219 GO:0019222 GO:0019904 GO:0022607 GO:0022613 GO:0022618 GO:0031323 GO:0031324 GO:0031974 GO:0031981 GO:0033119 GO:0034622 GO:0034641 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043484 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045292 GO:0045934 GO:0046483 GO:0048024 GO:0048025 GO:0048519 GO:0048523 GO:0050684 GO:0050686 GO:0050733 GO:0050789 GO:0050794 GO:0050896 GO:0051082 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065003 GO:0065007 GO:0070013 GO:0071704 GO:0071826 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1903311 GO:1903312

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

270

Amino Acids

30.96

Weight (kDa)

10.96

Isoelectric Point (pI)

112.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008030)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55460
fragaria_vesca	FvH4_7g22601 FvH4_7g22602
malus_domestica	MD01G1135000.v1.1 MD07G1199700.v1.1
prunus_persica	Prupe.2G236400_v2.0.a1 Prupe.2G236400_v2.0.a1 Prupe.2G236400_v2.0.a1 Prupe.2G236400_v2.0.a1
pyrus_communis	pycom01g15570 pycom07g18650
rosa_chinensis	RchiOBHm_Chr1g0367721
rosa_laevigata	RLG00000027268
rosa_multiflora	Rmu_co8328167.1_g000001 Rmu_sc0008470.1_g000003 Rmu_sc0033554.1_g000001
rosa_roxburghii	Rroxscaffold_4G00289280
rosa_rugosa	Rorug01G0336200
rosa_samantha	Rh1AG343300 Rh1BG305000 Rh1CG320700 Rh1DG337300 Rh6BG013900
rosa_wichuraiana	Rw1G030550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	523
Acc36I	ACCTGC	1 cut(s)	523
AccBSI	CCGCTC	1 cut(s)	498
AccI	GTMKAC	1 cut(s)	204
AccIII	TCCGGA	1 cut(s)	129
AciI	CCGC	5 cut(s)	51, 57, 60, 63, 496
AclWI	GGATC	1 cut(s)	772
AcsI	RAATTY	1 cut(s)	309
AcuI	CTGAAG	1 cut(s)	177
AcvI	CACGTG	1 cut(s)	584
AcyI	GRCGYC	1 cut(s)	526
AdeI	CACNNNGTG	1 cut(s)	584
AfaI	GTAC	2 cut(s)	11, 23
AfiI	CCNNNNNNNGG	2 cut(s)	93, 737
AgsI	TTSAA	1 cut(s)	179
AjnI	CCWGG	2 cut(s)	634, 736
AjuI	GAANNNNNNNTTGG	2 cut(s)	703, 735
AluBI	AGCT	2 cut(s)	45, 163
AluI	AGCT	2 cut(s)	45, 163
Alw26I	GTCTC	3 cut(s)	344, 558, 732
AlwI	GGATC	1 cut(s)	772
Ama87I	CYCGRG	1 cut(s)	237
Aor13HI	TCCGGA	1 cut(s)	129
AoxI	GGCC	4 cut(s)	362, 398, 623, 656
ApeKI	GCWGC	3 cut(s)	278, 344, 801
ApoI	RAATTY	1 cut(s)	309
AspA2I	CCTAGG	1 cut(s)	794
AspLEI	GCGC	3 cut(s)	99, 561, 801
AspS9I	GGNCC	5 cut(s)	127, 398, 504, 656, 771
AsuHPI	GGTGA	5 cut(s)	504, 545, 570, 747, 783
AvaI	CYCGRG	1 cut(s)	237
AvaII	GGWCC	3 cut(s)	127, 504, 771
AvrII	CCTAGG	1 cut(s)	794
BauI	CACGAG	1 cut(s)	695
BbrPI	CACGTG	1 cut(s)	584
BbvI	GCAGC	2 cut(s)	265, 331
BccI	CCATC	5 cut(s)	409, 481, 665, 701, 766
BceAI	ACGGC	1 cut(s)	513
BciT130I	CCWGG	2 cut(s)	636, 738
BclI	TGATCA	1 cut(s)	610
BcoDI	GTCTC	3 cut(s)	344, 558, 732
BfaI	CTAG	6 cut(s)	387, 483, 596, 732, 768, 795
BfmI	CTRYAG	3 cut(s)	25, 279, 345
BfuAI	ACCTGC	1 cut(s)	523
BglII	AGATCT	1 cut(s)	776
BisI	GCNGC	5 cut(s)	58, 61, 279, 345, 802
BlnI	CCTAGG	1 cut(s)	794
BlsI	GCNGC	5 cut(s)	59, 62, 280, 346, 803
BmcAI	AGTACT	1 cut(s)	23
Bme1390I	CCNGG	2 cut(s)	636, 738
Bme18I	GGWCC	3 cut(s)	127, 504, 771
BmeT110I	CYCGRG	1 cut(s)	237
BmgT120I	GGNCC	5 cut(s)	127, 398, 504, 656, 771
BmiI	GGNNCC	1 cut(s)	234
BmrFI	CCNGG	2 cut(s)	636, 738
BmrI	ACTGGG	1 cut(s)	237
BmsI	GCATC	3 cut(s)	363, 595, 755
BmuI	ACTGGG	1 cut(s)	237
BpmI	CTGGAG	1 cut(s)	618
BpuEI	CTTGAG	1 cut(s)	484
BsaAI	YACGTR	1 cut(s)	584
BsaBI	GATNNNNATC	3 cut(s)	609, 615, 757
BsaHI	GRCGYC	1 cut(s)	526
BsaI	GGTCTC	2 cut(s)	558, 732
BsaJI	CCNNGG	6 cut(s)	35, 89, 213, 236, 529, 794
BsaWI	WCCGGW	1 cut(s)	129
Bsc4I	CCNNNNNNNGG	2 cut(s)	93, 737
Bse1I	ACTGG	1 cut(s)	232
Bse8I	GATNNNNATC	3 cut(s)	609, 615, 757
BseAI	TCCGGA	1 cut(s)	129
BseBI	CCWGG	2 cut(s)	636, 738
BseDI	CCNNGG	6 cut(s)	35, 89, 213, 236, 529, 794
BseGI	GGATG	3 cut(s)	205, 712, 746
BseJI	GATNNNNATC	3 cut(s)	609, 615, 757
BseLI	CCNNNNNNNGG	2 cut(s)	93, 737
BseMII	CTCAG	2 cut(s)	302, 774
BseNI	ACTGG	1 cut(s)	232
BseRI	GAGGAG	3 cut(s)	19, 55, 383
BseXI	GCAGC	2 cut(s)	265, 331
BseYI	CCCAGC	2 cut(s)	317, 653
Bsh1285I	CGRYCG	1 cut(s)	425
BshFI	GGCC	4 cut(s)	364, 400, 625, 658
BsiEI	CGRYCG	1 cut(s)	425
BsiHKCI	CYCGRG	1 cut(s)	237
BsiSI	CCGG	1 cut(s)	130
BslFI	GGGAC	1 cut(s)	84
BslI	CCNNNNNNNGG	2 cut(s)	93, 737
BsmAI	GTCTC	3 cut(s)	344, 558, 732
BsmFI	GGGAC	1 cut(s)	84
BsnI	GGCC	4 cut(s)	364, 400, 625, 658
Bso31I	GGTCTC	2 cut(s)	558, 732
BsoBI	CYCGRG	1 cut(s)	237
Bsp13I	TCCGGA	1 cut(s)	129
Bsp143I	GATC	8 cut(s)	422, 575, 586, 610, 616, 752, 764, 776
BspACI	CCGC	5 cut(s)	51, 57, 60, 63, 496
BspANI	GGCC	4 cut(s)	364, 400, 625, 658
BspCNI	CTCAG	2 cut(s)	301, 775
BspEI	TCCGGA	1 cut(s)	129
BspHI	TCATGA	1 cut(s)	613
BspLI	GGNNCC	1 cut(s)	234
BspMAI	CTGCAG	2 cut(s)	283, 349
BspMI	ACCTGC	1 cut(s)	523
BspPI	GGATC	1 cut(s)	772
BspQI	GCTCTTC	1 cut(s)	153
BspTNI	GGTCTC	2 cut(s)	558, 732
BsrBI	CCGCTC	1 cut(s)	498
BsrI	ACTGG	1 cut(s)	232
BssECI	CCNNGG	6 cut(s)	35, 89, 213, 236, 529, 794
BssMI	GATC	8 cut(s)	422, 575, 586, 610, 616, 752, 764, 776
BssNI	GRCGYC	1 cut(s)	526
BssSI	CACGAG	1 cut(s)	695
BssT1I	CCWWGG	4 cut(s)	35, 89, 213, 794
Bst2BI	CACGAG	1 cut(s)	695
Bst2UI	CCWGG	2 cut(s)	636, 738
Bst4CI	ACNGT	1 cut(s)	21
Bst6I	CTCTTC	2 cut(s)	153, 706
BstACI	GRCGYC	1 cut(s)	526
BstBAI	YACGTR	1 cut(s)	584
BstC8I	GCNNGC	1 cut(s)	623
BstDEI	CTNAG	2 cut(s)	288, 783
BstDSI	CCRYGG	1 cut(s)	529
BstF5I	GGATG	3 cut(s)	205, 712, 746
BstHHI	GCGC	3 cut(s)	99, 561, 801
BstKTI	GATC	8 cut(s)	425, 578, 589, 613, 619, 755, 767, 779
BstMAI	GTCTC	3 cut(s)	344, 558, 732
BstMBI	GATC	8 cut(s)	422, 575, 586, 610, 616, 752, 764, 776
BstMCI	CGRYCG	1 cut(s)	425
BstMWI	GCNNNNNNNGC	5 cut(s)	57, 103, 284, 406, 495
BstNI	CCWGG	2 cut(s)	636, 738
BstSCI	CCNGG	2 cut(s)	634, 736
BstSFI	CTRYAG	3 cut(s)	25, 279, 345
BstV1I	GCAGC	2 cut(s)	265, 331
BstX2I	RGATCY	2 cut(s)	764, 776
BstYI	RGATCY	2 cut(s)	764, 776
BsuRI	GGCC	4 cut(s)	364, 400, 625, 658
BtgI	CCRYGG	1 cut(s)	529
BtsCI	GGATG	3 cut(s)	205, 712, 746
BtsIMutI	CAGTG	1 cut(s)	225
BveI	ACCTGC	1 cut(s)	523
Cac8I	GCNNGC	1 cut(s)	623
CciI	TCATGA	1 cut(s)	613
CfoI	GCGC	3 cut(s)	99, 561, 801
Cfr13I	GGNCC	5 cut(s)	127, 398, 504, 656, 771
CseI	GACGC	2 cut(s)	365, 534
Csp6I	GTAC	2 cut(s)	10, 22
CviAII	CATG	2 cut(s)	410, 614
CviQI	GTAC	2 cut(s)	10, 22
DdeI	CTNAG	2 cut(s)	288, 783
DpnI	GATC	8 cut(s)	424, 577, 588, 612, 618, 754, 766, 778
DpnII	GATC	8 cut(s)	422, 575, 586, 610, 616, 752, 764, 776
DraIII	CACNNNGTG	1 cut(s)	584
Eam1104I	CTCTTC	2 cut(s)	153, 706
EarI	CTCTTC	2 cut(s)	153, 706
EciI	GGCGGA	2 cut(s)	66, 78
Eco130I	CCWWGG	4 cut(s)	35, 89, 213, 794
Eco31I	GGTCTC	2 cut(s)	558, 732
Eco32I	GATATC	1 cut(s)	330
Eco47I	GGWCC	3 cut(s)	127, 504, 771
Eco57I	CTGAAG	1 cut(s)	177
Eco72I	CACGTG	1 cut(s)	584
Eco88I	CYCGRG	1 cut(s)	237
EcoO109I	RGGNCCY	1 cut(s)	504
EcoRII	CCWGG	2 cut(s)	634, 736
EcoRV	GATATC	1 cut(s)	330
EcoT14I	CCWWGG	4 cut(s)	35, 89, 213, 794
ErhI	CCWWGG	4 cut(s)	35, 89, 213, 794
FaeI	CATG	2 cut(s)	413, 617
FaqI	GGGAC	1 cut(s)	84
FatI	CATG	2 cut(s)	409, 613
FauNDI	CATATG	1 cut(s)	297
FbaI	TGATCA	1 cut(s)	610
FblI	GTMKAC	1 cut(s)	204
Fnu4HI	GCNGC	5 cut(s)	58, 61, 279, 345, 802
FokI	GGATG	3 cut(s)	212, 719, 733
Fsp4HI	GCNGC	5 cut(s)	58, 61, 279, 345, 802
FspBI	CTAG	6 cut(s)	387, 483, 596, 732, 768, 795
GlaI	GCGC	3 cut(s)	98, 560, 800
GluI	GCNGC	5 cut(s)	58, 61, 279, 345, 802
GsaI	CCCAGC	2 cut(s)	321, 657
GsuI	CTGGAG	1 cut(s)	618
HaeIII	GGCC	4 cut(s)	364, 400, 625, 658
HapII	CCGG	1 cut(s)	130
HgaI	GACGC	2 cut(s)	365, 534
HhaI	GCGC	3 cut(s)	99, 561, 801
Hin1I	GRCGYC	1 cut(s)	526
Hin1II	CATG	2 cut(s)	413, 617
Hin6I	GCGC	3 cut(s)	97, 559, 799
HinP1I	GCGC	3 cut(s)	97, 559, 799
HinfI	GANTC	2 cut(s)	266, 536
HpaII	CCGG	1 cut(s)	130
HphI	GGTGA	5 cut(s)	504, 545, 570, 747, 783
Hpy166II	GTNNAC	2 cut(s)	205, 455
Hpy188I	TCNGA	1 cut(s)	406
Hpy188III	TCNNGA	8 cut(s)	130, 143, 197, 483, 614, 750, 762, 774
Hpy8I	GTNNAC	2 cut(s)	205, 455
HpyAV	CCTTC	2 cut(s)	411, 549
HpyCH4III	ACNGT	1 cut(s)	21
HpyCH4IV	ACGT	3 cut(s)	439, 457, 583
HpyCH4V	TGCA	6 cut(s)	150, 248, 256, 281, 347, 694
HpyF10VI	GCNNNNNNNGC	5 cut(s)	57, 103, 284, 406, 495
HpyF3I	CTNAG	2 cut(s)	288, 783
HpySE526I	ACGT	3 cut(s)	439, 457, 583
Hsp92I	GRCGYC	1 cut(s)	526
Hsp92II	CATG	2 cut(s)	413, 617
HspAI	GCGC	3 cut(s)	97, 559, 799
Kpn2I	TCCGGA	1 cut(s)	129
Ksp22I	TGATCA	1 cut(s)	610
Kzo9I	GATC	8 cut(s)	422, 575, 586, 610, 616, 752, 764, 776
LguI	GCTCTTC	1 cut(s)	153
LmnI	GCTCC	3 cut(s)	42, 103, 523
Lsp1109I	GCAGC	2 cut(s)	265, 331
LweI	GCATC	3 cut(s)	363, 595, 755
MaeI	CTAG	6 cut(s)	387, 483, 596, 732, 768, 795
MaeII	ACGT	3 cut(s)	439, 457, 583
MaeIII	GTNAC	1 cut(s)	533
MalI	GATC	8 cut(s)	424, 577, 588, 612, 618, 754, 766, 778
MbiI	CCGCTC	1 cut(s)	498
MboI	GATC	8 cut(s)	422, 575, 586, 610, 616, 752, 764, 776
MboII	GAAGA	4 cut(s)	90, 170, 581, 723
MflI	RGATCY	2 cut(s)	764, 776
MluCI	AATT	2 cut(s)	257, 309
MlyI	GAGTC	1 cut(s)	530
MroI	TCCGGA	1 cut(s)	129
MspI	CCGG	1 cut(s)	130
MspR9I	CCNGG	2 cut(s)	636, 738
MvaI	CCWGG	2 cut(s)	636, 738
MwoI	GCNNNNNNNGC	5 cut(s)	57, 103, 284, 406, 495
NdeI	CATATG	1 cut(s)	297
NdeII	GATC	8 cut(s)	422, 575, 586, 610, 616, 752, 764, 776
NlaIII	CATG	2 cut(s)	413, 617
NlaIV	GGNNCC	1 cut(s)	234
NmuCI	GTSAC	1 cut(s)	533
PagI	TCATGA	1 cut(s)	613
PaqCI	CACCTGC	1 cut(s)	523
PciSI	GCTCTTC	1 cut(s)	153
PfeI	GAWTC	1 cut(s)	266
PkrI	GCNGC	5 cut(s)	59, 62, 280, 346, 803
Ple19I	CGATCG	1 cut(s)	425
PleI	GAGTC	1 cut(s)	530
PmaCI	CACGTG	1 cut(s)	584
PmlI	CACGTG	1 cut(s)	584
PpsI	GAGTC	1 cut(s)	530
Ppu21I	YACGTR	1 cut(s)	584
PpuMI	RGGWCCY	1 cut(s)	504
Psp5II	RGGWCCY	1 cut(s)	504
Psp6I	CCWGG	2 cut(s)	634, 736
PspCI	CACGTG	1 cut(s)	584
PspFI	CCCAGC	2 cut(s)	317, 653
PspGI	CCWGG	2 cut(s)	634, 736
PspN4I	GGNNCC	1 cut(s)	234
PspPI	GGNCC	5 cut(s)	127, 398, 504, 656, 771
PspPPI	RGGWCCY	1 cut(s)	504
PstI	CTGCAG	2 cut(s)	283, 349
PsuI	RGATCY	2 cut(s)	764, 776
PvuI	CGATCG	1 cut(s)	425
RsaI	GTAC	2 cut(s)	11, 23
RsaNI	GTAC	2 cut(s)	10, 22
SapI	GCTCTTC	1 cut(s)	153
SatI	GCNGC	5 cut(s)	58, 61, 279, 345, 802
Sau3AI	GATC	8 cut(s)	422, 575, 586, 610, 616, 752, 764, 776
Sau96I	GGNCC	5 cut(s)	127, 398, 504, 656, 771
ScaI	AGTACT	1 cut(s)	23
SchI	GAGTC	1 cut(s)	530
ScrFI	CCNGG	2 cut(s)	636, 738
SfaNI	GCATC	3 cut(s)	363, 595, 755
SfcI	CTRYAG	3 cut(s)	25, 279, 345
SinI	GGWCC	3 cut(s)	127, 504, 771
SmlI	CTYRAG	1 cut(s)	499
SmoI	CTYRAG	1 cut(s)	499
Sse9I	AATT	2 cut(s)	257, 309
SsiI	CCGC	5 cut(s)	51, 57, 60, 63, 496
SspMI	CTAG	6 cut(s)	387, 483, 596, 732, 768, 795
StyD4I	CCNGG	2 cut(s)	634, 736
StyI	CCWWGG	4 cut(s)	35, 89, 213, 794
TaaI	ACNGT	1 cut(s)	21
TaiI	ACGT	3 cut(s)	442, 460, 586
TasI	AATT	2 cut(s)	257, 309
TatI	WGTACW	1 cut(s)	21
TauI	GCSGC	2 cut(s)	60, 63
TfiI	GAWTC	1 cut(s)	266
TscAI	CASTG	1 cut(s)	232
TseFI	GTSAC	1 cut(s)	533
TseI	GCWGC	3 cut(s)	278, 344, 801
Tsp45I	GTSAC	1 cut(s)	533
TspDTI	ATGAA	3 cut(s)	314, 678, 693
TspRI	CASTG	1 cut(s)	232
VpaK11BI	GGWCC	3 cut(s)	127, 504, 771
XapI	RAATTY	1 cut(s)	309
XbaI	TCTAGA	1 cut(s)	482
XmaJI	CCTAGG	1 cut(s)	794
XmiI	GTMKAC	1 cut(s)	204
XspI	CTAG	6 cut(s)	387, 483, 596, 732, 768, 795
ZrmI	AGTACT	1 cut(s)	23

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.