Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008470.1

Orthogroup ID

OG0008030

Physical Location & Seq

Genomic Coordinates Reverse (-)

7081 .. 9451

Gene Structure 2371 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008470.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

atgaggaggtacagcccagagtactacagtcctccgaggagaggctacggcggcggcggtggtggccggggaagaagcccgccgaggaagcgcagggagcagaataacggaagccttttggtccggaacattcctctggattgcaggccggaagagctgagggttccctttgagagatttgggcttgttcgggatgtctacatccccaaggattactatactggggaacctcggggatttgcattcgtgcaatttgtggattcttatgaagctgcagaggctcagtatcatatgaatgggaaaatttttgctgggagggagatatctgtggttcttgctgcagagacaaggaaaagaccagaggagatgcgccaaagaactagggtcagagggccatcatcaggctatggggacagaagatcatctcattatggacgttctcgttctcgttcacgctctccacactatccatcaggttcaagaagtcggtaccgctcaaggtcctattctcctgctccaagacgacgaggtgattctgtttcgccagttagaaggcgtggtgaccacccaaggtcacctcgtgaccatccacgttcaccacttgaccacccaaggtcatcaagggattctccccttgagagaggtggtgatcatgatcgaaggccatattctccaggttatgacaatggtgctgggcaagctgaaaatggagacgggtatgacaagaaatcgaggtatgatgaggagattgaaccacgaggcaattggagatctcctgataaagcatcaagatcaccatctggttctaggtccagatctgccgagttatcacctaggcgcagcagataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000244 GO:0000245 GO:0000375 GO:0000377 GO:0000381 GO:0000387 GO:0000395 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006376 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0008380 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010629 GO:0016043 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0019219 GO:0019222 GO:0019904 GO:0022607 GO:0022613 GO:0022618 GO:0031323 GO:0031324 GO:0031974 GO:0031981 GO:0033119 GO:0034622 GO:0034641 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043484 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045292 GO:0045934 GO:0046483 GO:0048024 GO:0048025 GO:0048519 GO:0048523 GO:0050684 GO:0050686 GO:0050733 GO:0050789 GO:0050794 GO:0050896 GO:0051082 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065003 GO:0065007 GO:0070013 GO:0071704 GO:0071826 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1903311 GO:1903312

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

282

Amino Acids

32.36

Weight (kDa)

10.81

Isoelectric Point (pI)

106.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008030)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55460
fragaria_vesca	FvH4_7g22601 FvH4_7g22602
malus_domestica	MD01G1135000.v1.1 MD07G1199700.v1.1
prunus_persica	Prupe.2G236400_v2.0.a1 Prupe.2G236400_v2.0.a1 Prupe.2G236400_v2.0.a1 Prupe.2G236400_v2.0.a1
pyrus_communis	pycom01g15570 pycom07g18650
rosa_chinensis	RchiOBHm_Chr1g0367721
rosa_laevigata	RLG00000027268
rosa_multiflora	Rmu_co8328167.1_g000001 Rmu_sc0008470.1_g000003 Rmu_sc0033554.1_g000001
rosa_roxburghii	Rroxscaffold_4G00289280
rosa_rugosa	Rorug01G0336200
rosa_samantha	Rh1AG343300 Rh1BG305000 Rh1CG320700 Rh1DG337300 Rh6BG013900
rosa_wichuraiana	Rw1G030550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	489
AccB1I	GGYRCC	1 cut(s)	489
AccBSI	CCGCTC	1 cut(s)	495
AccI	GTMKAC	1 cut(s)	198
AccIII	TCCGGA	1 cut(s)	123
AciI	CCGC	5 cut(s)	51, 54, 57, 80, 493
AcoI	YGGCCR	1 cut(s)	64
AcsI	RAATTY	1 cut(s)	303
AdeI	CACNNNGTG	1 cut(s)	581
AfaI	GTAC	3 cut(s)	11, 23, 491
AfiI	CCNNNNNNNGG	2 cut(s)	41, 401
AgsI	TTSAA	2 cut(s)	480, 752
AjnI	CCWGG	1 cut(s)	673
AluBI	AGCT	3 cut(s)	157, 272, 701
AluI	AGCT	3 cut(s)	157, 272, 701
Alw26I	GTCTC	2 cut(s)	338, 705
Ama87I	CYCGRG	1 cut(s)	231
Aor13HI	TCCGGA	1 cut(s)	123
AoxI	GGCC	4 cut(s)	64, 146, 392, 662
ApeKI	GCWGC	3 cut(s)	272, 338, 840
ApoI	RAATTY	1 cut(s)	303
Asp718I	GGTACC	1 cut(s)	489
AspA2I	CCTAGG	1 cut(s)	833
AspLEI	GCGC	3 cut(s)	93, 372, 840
AspS9I	GGNCC	4 cut(s)	121, 392, 501, 810
AsuC2I	CCSGG	1 cut(s)	68
AsuHPI	GGTGA	7 cut(s)	542, 567, 572, 588, 659, 786, 822
AvaI	CYCGRG	1 cut(s)	231
AvaII	GGWCC	3 cut(s)	121, 501, 810
AvrII	CCTAGG	1 cut(s)	833
BanI	GGYRCC	1 cut(s)	489
BauI	CACGAG	2 cut(s)	579, 756
BbvCI	CCTCAGC	1 cut(s)	158
BbvI	GCAGC	2 cut(s)	259, 325
BccI	CCATC	4 cut(s)	403, 478, 594, 805
BceAI	ACGGC	1 cut(s)	64
BciT130I	CCWGG	1 cut(s)	675
BclI	TGATCA	1 cut(s)	649
BcnI	CCSGG	1 cut(s)	68
BcoDI	GTCTC	2 cut(s)	338, 705
BfaI	CTAG	3 cut(s)	381, 807, 834
BfmI	CTRYAG	3 cut(s)	25, 273, 339
BglII	AGATCT	2 cut(s)	770, 815
BisI	GCNGC	5 cut(s)	52, 55, 273, 339, 841
BlnI	CCTAGG	1 cut(s)	833
BlsI	GCNGC	5 cut(s)	53, 56, 274, 340, 842
BmcAI	AGTACT	1 cut(s)	23
Bme1390I	CCNGG	2 cut(s)	68, 675
Bme18I	GGWCC	3 cut(s)	121, 501, 810
BmeT110I	CYCGRG	1 cut(s)	231
BmgT120I	GGNCC	4 cut(s)	121, 392, 501, 810
BmiI	GGNNCC	3 cut(s)	165, 228, 491
BmrFI	CCNGG	2 cut(s)	68, 675
BmrI	ACTGGG	1 cut(s)	231
BmsI	GCATC	2 cut(s)	357, 794
BmuI	ACTGGG	1 cut(s)	231
BpmI	CTGGAG	1 cut(s)	657
Bpu10I	CCTNAGC	1 cut(s)	158
BpuEI	CTTGAG	2 cut(s)	481, 656
BpuMI	CCSGG	1 cut(s)	68
BsaBI	GATNNNNATC	2 cut(s)	654, 796
BsaJI	CCNNGG	8 cut(s)	35, 67, 83, 207, 230, 569, 611, 833
BsaWI	WCCGGW	1 cut(s)	123
Bsc4I	CCNNNNNNNGG	2 cut(s)	41, 401
Bse1I	ACTGG	2 cut(s)	226, 545
Bse8I	GATNNNNATC	2 cut(s)	654, 796
BseAI	TCCGGA	1 cut(s)	123
BseBI	CCWGG	1 cut(s)	675
BseDI	CCNNGG	8 cut(s)	35, 67, 83, 207, 230, 569, 611, 833
BseGI	GGATG	3 cut(s)	199, 201, 586
BseJI	GATNNNNATC	2 cut(s)	654, 796
BseLI	CCNNNNNNNGG	2 cut(s)	41, 401
BseMII	CTCAG	2 cut(s)	149, 296
BseNI	ACTGG	2 cut(s)	226, 545
BseRI	GAGGAG	4 cut(s)	19, 52, 377, 758
BseXI	GCAGC	2 cut(s)	259, 325
BseYI	CCCAGC	2 cut(s)	311, 692
BshFI	GGCC	4 cut(s)	66, 148, 394, 664
BshNI	GGYRCC	1 cut(s)	489
BsiHKCI	CYCGRG	1 cut(s)	231
BsiSI	CCGG	3 cut(s)	67, 124, 149
BslFI	GGGAC	1 cut(s)	425
BslI	CCNNNNNNNGG	2 cut(s)	41, 401
BsmAI	GTCTC	2 cut(s)	338, 705
BsmBI	CGTCTC	1 cut(s)	705
BsmFI	GGGAC	1 cut(s)	425
BsmI	GAATGC	1 cut(s)	242
BsnI	GGCC	4 cut(s)	66, 148, 394, 664
BsoBI	CYCGRG	1 cut(s)	231
Bsp13I	TCCGGA	1 cut(s)	123
Bsp143I	GATC	6 cut(s)	419, 649, 655, 770, 791, 815
BspACI	CCGC	5 cut(s)	51, 54, 57, 80, 493
BspANI	GGCC	4 cut(s)	66, 148, 394, 664
BspCNI	CTCAG	2 cut(s)	150, 295
BspEI	TCCGGA	1 cut(s)	123
BspHI	TCATGA	1 cut(s)	652
BspLI	GGNNCC	3 cut(s)	165, 228, 491
BspMAI	CTGCAG	2 cut(s)	277, 343
BspQI	GCTCTTC	1 cut(s)	147
BspT107I	GGYRCC	1 cut(s)	489
BsrBI	CCGCTC	1 cut(s)	495
BsrI	ACTGG	2 cut(s)	226, 545
BssECI	CCNNGG	8 cut(s)	35, 67, 83, 207, 230, 569, 611, 833
BssMI	GATC	6 cut(s)	419, 649, 655, 770, 791, 815
BssSI	CACGAG	2 cut(s)	579, 756
BssT1I	CCWWGG	4 cut(s)	207, 569, 611, 833
Bst2BI	CACGAG	2 cut(s)	579, 756
Bst2UI	CCWGG	1 cut(s)	675
Bst4CI	ACNGT	1 cut(s)	29
Bst6I	CTCTTC	1 cut(s)	147
BstC8I	GCNNGC	3 cut(s)	80, 146, 699
BstDEI	CTNAG	2 cut(s)	158, 282
BstEII	GGTNACC	2 cut(s)	560, 573
BstF5I	GGATG	3 cut(s)	199, 201, 586
BstHHI	GCGC	3 cut(s)	93, 372, 840
BstKTI	GATC	6 cut(s)	422, 652, 658, 773, 794, 818
BstMAI	GTCTC	2 cut(s)	338, 705
BstMBI	GATC	6 cut(s)	419, 649, 655, 770, 791, 815
BstMWI	GCNNNNNNNGC	7 cut(s)	51, 63, 88, 97, 154, 278, 698
BstNI	CCWGG	1 cut(s)	675
BstPI	GGTNACC	2 cut(s)	560, 573
BstSCI	CCNGG	2 cut(s)	66, 673
BstSFI	CTRYAG	3 cut(s)	25, 273, 339
BstV1I	GCAGC	2 cut(s)	259, 325
BstX2I	RGATCY	2 cut(s)	770, 815
BstYI	RGATCY	2 cut(s)	770, 815
BsuRI	GGCC	4 cut(s)	66, 148, 394, 664
BtsCI	GGATG	3 cut(s)	199, 201, 586
Cac8I	GCNNGC	3 cut(s)	80, 146, 699
CciI	TCATGA	1 cut(s)	652
CfoI	GCGC	3 cut(s)	93, 372, 840
Cfr13I	GGNCC	4 cut(s)	121, 392, 501, 810
Csp6I	GTAC	3 cut(s)	10, 22, 490
CviAII	CATG	1 cut(s)	653
CviQI	GTAC	3 cut(s)	10, 22, 490
DdeI	CTNAG	2 cut(s)	158, 282
DpnI	GATC	6 cut(s)	421, 651, 657, 772, 793, 817
DpnII	GATC	6 cut(s)	419, 649, 655, 770, 791, 815
DraIII	CACNNNGTG	1 cut(s)	581
EaeI	YGGCCR	1 cut(s)	64
Eam1104I	CTCTTC	1 cut(s)	147
EarI	CTCTTC	1 cut(s)	147
Eco130I	CCWWGG	4 cut(s)	207, 569, 611, 833
Eco32I	GATATC	1 cut(s)	324
Eco47I	GGWCC	3 cut(s)	121, 501, 810
Eco88I	CYCGRG	1 cut(s)	231
Eco91I	GGTNACC	2 cut(s)	560, 573
EcoO109I	RGGNCCY	1 cut(s)	501
EcoO65I	GGTNACC	2 cut(s)	560, 573
EcoRII	CCWGG	1 cut(s)	673
EcoRV	GATATC	1 cut(s)	324
EcoT14I	CCWWGG	4 cut(s)	207, 569, 611, 833
ErhI	CCWWGG	4 cut(s)	207, 569, 611, 833
Esp3I	CGTCTC	1 cut(s)	705
FaeI	CATG	1 cut(s)	656
FaqI	GGGAC	1 cut(s)	425
FatI	CATG	1 cut(s)	652
FauI	CCCGC	1 cut(s)	87
FauNDI	CATATG	1 cut(s)	291
FbaI	TGATCA	1 cut(s)	649
FblI	GTMKAC	1 cut(s)	198
Fnu4HI	GCNGC	5 cut(s)	52, 55, 273, 339, 841
FokI	GGATG	3 cut(s)	188, 206, 573
Fsp4HI	GCNGC	5 cut(s)	52, 55, 273, 339, 841
FspBI	CTAG	3 cut(s)	381, 807, 834
GlaI	GCGC	3 cut(s)	92, 371, 839
GluI	GCNGC	5 cut(s)	52, 55, 273, 339, 841
GsaI	CCCAGC	2 cut(s)	315, 696
GsuI	CTGGAG	1 cut(s)	657
HaeIII	GGCC	4 cut(s)	66, 148, 394, 664
HapII	CCGG	3 cut(s)	67, 124, 149
HhaI	GCGC	3 cut(s)	93, 372, 840
Hin1II	CATG	1 cut(s)	656
Hin6I	GCGC	3 cut(s)	91, 370, 838
HinP1I	GCGC	3 cut(s)	91, 370, 838
HinfI	GANTC	3 cut(s)	260, 533, 626
HpaII	CCGG	3 cut(s)	67, 124, 149
HphI	GGTGA	7 cut(s)	542, 567, 572, 588, 659, 786, 822
Hpy166II	GTNNAC	3 cut(s)	199, 452, 596
Hpy188I	TCNGA	2 cut(s)	36, 389
Hpy188III	TCNNGA	9 cut(s)	124, 137, 191, 480, 581, 653, 776, 789, 813
Hpy8I	GTNNAC	3 cut(s)	199, 452, 596
Hpy99I	CGWCG	1 cut(s)	528
HpyAV	CCTTC	2 cut(s)	546, 654
HpyCH4III	ACNGT	1 cut(s)	29
HpyCH4IV	ACGT	2 cut(s)	436, 592
HpyCH4V	TGCA	5 cut(s)	144, 242, 250, 275, 341
HpyF10VI	GCNNNNNNNGC	7 cut(s)	51, 63, 88, 97, 154, 278, 698
HpyF3I	CTNAG	2 cut(s)	158, 282
HpySE526I	ACGT	2 cut(s)	436, 592
Hsp92II	CATG	1 cut(s)	656
HspAI	GCGC	3 cut(s)	91, 370, 838
Kpn2I	TCCGGA	1 cut(s)	123
KpnI	GGTACC	1 cut(s)	493
Ksp22I	TGATCA	1 cut(s)	649
Kzo9I	GATC	6 cut(s)	419, 649, 655, 770, 791, 815
LguI	GCTCTTC	1 cut(s)	147
LmnI	GCTCC	2 cut(s)	97, 520
Lsp1109I	GCAGC	2 cut(s)	259, 325
LweI	GCATC	2 cut(s)	357, 794
MaeI	CTAG	3 cut(s)	381, 807, 834
MaeII	ACGT	2 cut(s)	436, 592
MaeIII	GTNAC	3 cut(s)	560, 573, 581
MalI	GATC	6 cut(s)	421, 651, 657, 772, 793, 817
MbiI	CCGCTC	1 cut(s)	495
MboI	GATC	6 cut(s)	419, 649, 655, 770, 791, 815
MboII	GAAGA	3 cut(s)	84, 164, 429
MfeI	CAATTG	1 cut(s)	763
MflI	RGATCY	2 cut(s)	770, 815
MluCI	AATT	3 cut(s)	251, 303, 763
MroI	TCCGGA	1 cut(s)	123
MslI	CAYNNNNRTG	1 cut(s)	294
MspI	CCGG	3 cut(s)	67, 124, 149
MspR9I	CCNGG	2 cut(s)	68, 675
MunI	CAATTG	1 cut(s)	763
Mva1269I	GAATGC	1 cut(s)	242
MvaI	CCWGG	1 cut(s)	675
MwoI	GCNNNNNNNGC	7 cut(s)	51, 63, 88, 97, 154, 278, 698
NciI	CCSGG	1 cut(s)	68
NdeI	CATATG	1 cut(s)	291
NdeII	GATC	6 cut(s)	419, 649, 655, 770, 791, 815
NlaIII	CATG	1 cut(s)	656
NlaIV	GGNNCC	3 cut(s)	165, 228, 491
NmeAIII	GCCGAG	2 cut(s)	108, 847
NmuCI	GTSAC	3 cut(s)	560, 573, 581
PagI	TCATGA	1 cut(s)	652
PciSI	GCTCTTC	1 cut(s)	147
PctI	GAATGC	1 cut(s)	242
PfeI	GAWTC	3 cut(s)	260, 533, 626
PkrI	GCNGC	5 cut(s)	53, 56, 274, 340, 842
PpuMI	RGGWCCY	1 cut(s)	501
Psp5II	RGGWCCY	1 cut(s)	501
Psp6I	CCWGG	1 cut(s)	673
PspEI	GGTNACC	2 cut(s)	560, 573
PspFI	CCCAGC	2 cut(s)	311, 692
PspGI	CCWGG	1 cut(s)	673
PspN4I	GGNNCC	3 cut(s)	165, 228, 491
PspPI	GGNCC	4 cut(s)	121, 392, 501, 810
PspPPI	RGGWCCY	1 cut(s)	501
PstI	CTGCAG	2 cut(s)	277, 343
PsuI	RGATCY	2 cut(s)	770, 815
RsaI	GTAC	3 cut(s)	11, 23, 491
RsaNI	GTAC	3 cut(s)	10, 22, 490
RseI	CAYNNNNRTG	1 cut(s)	294
SapI	GCTCTTC	1 cut(s)	147
SatI	GCNGC	5 cut(s)	52, 55, 273, 339, 841
Sau3AI	GATC	6 cut(s)	419, 649, 655, 770, 791, 815
Sau96I	GGNCC	4 cut(s)	121, 392, 501, 810
ScaI	AGTACT	1 cut(s)	23
ScrFI	CCNGG	2 cut(s)	68, 675
SfaNI	GCATC	2 cut(s)	357, 794
SfcI	CTRYAG	3 cut(s)	25, 273, 339
SinI	GGWCC	3 cut(s)	121, 501, 810
SmiMI	CAYNNNNRTG	1 cut(s)	294
SmlI	CTYRAG	2 cut(s)	496, 635
SmoI	CTYRAG	2 cut(s)	496, 635
Sse9I	AATT	3 cut(s)	251, 303, 763
SsiI	CCGC	5 cut(s)	51, 54, 57, 80, 493
SspMI	CTAG	3 cut(s)	381, 807, 834
StyD4I	CCNGG	2 cut(s)	66, 673
StyI	CCWWGG	4 cut(s)	207, 569, 611, 833
TaaI	ACNGT	1 cut(s)	29
TaiI	ACGT	2 cut(s)	439, 595
TaqI	TCGA	2 cut(s)	658, 731
TasI	AATT	3 cut(s)	251, 303, 763
TatI	WGTACW	1 cut(s)	21
TauI	GCSGC	2 cut(s)	54, 57
TfiI	GAWTC	3 cut(s)	260, 533, 626
TseFI	GTSAC	3 cut(s)	560, 573, 581
TseI	GCWGC	3 cut(s)	272, 338, 840
Tsp45I	GTSAC	3 cut(s)	560, 573, 581
TspDTI	ATGAA	2 cut(s)	282, 308
TspGWI	ACGGA	1 cut(s)	123
VpaK11BI	GGWCC	3 cut(s)	121, 501, 810
XapI	RAATTY	1 cut(s)	303
XcmI	CCANNNNNNNNNTGG	1 cut(s)	762
XmaJI	CCTAGG	1 cut(s)	833
XmiI	GTMKAC	1 cut(s)	198
XspI	CTAG	3 cut(s)	381, 807, 834
ZrmI	AGTACT	1 cut(s)	23

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.