Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0008030

Physical Location & Seq

Genomic Coordinates Forward (+)

15399419 .. 15400300

Gene Structure 882 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g15570.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGGGCGTTCACGTTCTCGTTCTCGCTCTCCACGCTATCCATCAGGTTCTAGAAGTCGATACCGCTCAAGGTCCTATTCTCCTGCACCAAGACAGCGAGGCGACTCTATTTCACCGAGAAGAAGGCGCCGAGACAACCCAAGATCACCCCAAGATCTTCCATCACTGCGAGACGGTGATCATCGATCGCAGACCATATTCTCCAGGTTATGACAATGGGGCTGGACCAATTGAAAATGCCGATGGGTATGACAAGAAACCTATGCGCGAAGATAAGGACGGAAGAGATCACTGGAGGTCTCCTGATAGAGCATCAAGATCACCATCTGGATCTAGGTCCAGATCTGCTGAGTTATCACCTCCGCGCAACAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000244 GO:0000245 GO:0000375 GO:0000377 GO:0000381 GO:0000387 GO:0000395 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006376 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0008380 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010629 GO:0016043 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0019219 GO:0019222 GO:0019904 GO:0022607 GO:0022613 GO:0022618 GO:0031323 GO:0031324 GO:0031974 GO:0031981 GO:0033119 GO:0034622 GO:0034641 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043484 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045292 GO:0045934 GO:0046483 GO:0048024 GO:0048025 GO:0048519 GO:0048523 GO:0050684 GO:0050686 GO:0050733 GO:0050789 GO:0050794 GO:0050896 GO:0051082 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065003 GO:0065007 GO:0070013 GO:0071704 GO:0071826 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1903311 GO:1903312

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

125

Amino Acids

13.94

Weight (kDa)

6.11

Isoelectric Point (pI)

58.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008030)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55460
fragaria_vesca	FvH4_7g22601 FvH4_7g22602
malus_domestica	MD01G1135000.v1.1 MD07G1199700.v1.1
prunus_persica	Prupe.2G236400_v2.0.a1 Prupe.2G236400_v2.0.a1 Prupe.2G236400_v2.0.a1 Prupe.2G236400_v2.0.a1
pyrus_communis	pycom01g15570 pycom07g18650
rosa_chinensis	RchiOBHm_Chr1g0367721
rosa_laevigata	RLG00000027268
rosa_multiflora	Rmu_co8328167.1_g000001 Rmu_sc0008470.1_g000003 Rmu_sc0033554.1_g000001
rosa_roxburghii	Rroxscaffold_4G00289280
rosa_rugosa	Rorug01G0336200
rosa_samantha	Rh1AG343300 Rh1BG305000 Rh1CG320700 Rh1DG337300 Rh6BG013900
rosa_wichuraiana	Rw1G030550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	125
AccBSI	CCGCTC	1 cut(s)	65
AccII	CGCG	2 cut(s)	267, 364
AciI	CCGC	2 cut(s)	63, 362
AclWI	GGATC	1 cut(s)	337
AcyI	GRCGYC	1 cut(s)	126
AgsI	TTSAA	1 cut(s)	233
AjnI	CCWGG	1 cut(s)	202
Alw26I	GTCTC	3 cut(s)	125, 164, 303
AlwI	GGATC	1 cut(s)	337
AspLEI	GCGC	3 cut(s)	128, 267, 366
AspS9I	GGNCC	3 cut(s)	71, 224, 336
AsuHPI	GGTGA	5 cut(s)	104, 137, 187, 312, 348
AvaII	GGWCC	3 cut(s)	71, 224, 336
BanI	GGYRCC	1 cut(s)	125
BccI	CCATC	4 cut(s)	48, 168, 236, 331
BciT130I	CCWGG	1 cut(s)	204
BclI	TGATCA	1 cut(s)	177
BcoDI	GTCTC	3 cut(s)	125, 164, 303
BfaI	CTAG	2 cut(s)	50, 333
BfoI	RGCGCY	1 cut(s)	129
BglII	AGATCT	2 cut(s)	153, 341
Bme1390I	CCNGG	1 cut(s)	204
Bme18I	GGWCC	3 cut(s)	71, 224, 336
BmgT120I	GGNCC	3 cut(s)	71, 224, 336
BmiI	GGNNCC	1 cut(s)	127
BmrFI	CCNGG	1 cut(s)	204
BmsI	GCATC	1 cut(s)	320
BpmI	CTGGAG	2 cut(s)	186, 313
BpuEI	CTTGAG	1 cut(s)	51
Bsa29I	ATCGAT	1 cut(s)	183
BsaBI	GATNNNNATC	1 cut(s)	322
BsaHI	GRCGYC	1 cut(s)	126
BsaI	GGTCTC	1 cut(s)	303
Bse1I	ACTGG	1 cut(s)	296
Bse8I	GATNNNNATC	1 cut(s)	322
BseBI	CCWGG	1 cut(s)	204
BseCI	ATCGAT	1 cut(s)	183
BseJI	GATNNNNATC	1 cut(s)	322
BseMII	CTCAG	1 cut(s)	339
BseNI	ACTGG	1 cut(s)	296
BsgI	GTGCAG	1 cut(s)	68
Bsh1236I	CGCG	2 cut(s)	267, 364
Bsh1285I	CGRYCG	1 cut(s)	187
BshNI	GGYRCC	1 cut(s)	125
BshVI	ATCGAT	1 cut(s)	183
BsiEI	CGRYCG	1 cut(s)	187
BsmAI	GTCTC	3 cut(s)	125, 164, 303
BsmBI	CGTCTC	1 cut(s)	164
Bso31I	GGTCTC	1 cut(s)	303
Bsp143I	GATC	8 cut(s)	142, 153, 177, 184, 286, 317, 329, 341
BspACI	CCGC	2 cut(s)	63, 362
BspCNI	CTCAG	1 cut(s)	340
BspDI	ATCGAT	1 cut(s)	183
BspFNI	CGCG	2 cut(s)	267, 364
BspLI	GGNNCC	1 cut(s)	127
BspPI	GGATC	1 cut(s)	337
BspT107I	GGYRCC	1 cut(s)	125
BspTNI	GGTCTC	1 cut(s)	303
BsrBI	CCGCTC	1 cut(s)	65
BsrI	ACTGG	1 cut(s)	296
BssMI	GATC	8 cut(s)	142, 153, 177, 184, 286, 317, 329, 341
BssNI	GRCGYC	1 cut(s)	126
Bst2UI	CCWGG	1 cut(s)	204
Bst4CI	ACNGT	1 cut(s)	175
Bst6I	CTCTTC	1 cut(s)	277
BstACI	GRCGYC	1 cut(s)	126
BstDEI	CTNAG	1 cut(s)	348
BstFNI	CGCG	2 cut(s)	267, 364
BstH2I	RGCGCY	1 cut(s)	129
BstHHI	GCGC	3 cut(s)	128, 267, 366
BstKTI	GATC	8 cut(s)	145, 156, 180, 187, 289, 320, 332, 344
BstMAI	GTCTC	3 cut(s)	125, 164, 303
BstMBI	GATC	8 cut(s)	142, 153, 177, 184, 286, 317, 329, 341
BstMCI	CGRYCG	1 cut(s)	187
BstMWI	GCNNNNNNNGC	1 cut(s)	32
BstNI	CCWGG	1 cut(s)	204
BstSCI	CCNGG	1 cut(s)	202
BstUI	CGCG	2 cut(s)	267, 364
BstX2I	RGATCY	3 cut(s)	153, 329, 341
BstYI	RGATCY	3 cut(s)	153, 329, 341
Bsu15I	ATCGAT	1 cut(s)	183
BsuTUI	ATCGAT	1 cut(s)	183
BtsI	GCAGTG	1 cut(s)	163
BtsIMutI	CAGTG	2 cut(s)	163, 289
CfoI	GCGC	3 cut(s)	128, 267, 366
Cfr13I	GGNCC	3 cut(s)	71, 224, 336
ClaI	ATCGAT	1 cut(s)	183
CviJI	RGCY	1 cut(s)	221
CviKI_1	RGCY	1 cut(s)	221
DdeI	CTNAG	1 cut(s)	348
DinI	GGCGCC	1 cut(s)	127
DpnI	GATC	8 cut(s)	144, 155, 179, 186, 288, 319, 331, 343
DpnII	GATC	8 cut(s)	142, 153, 177, 184, 286, 317, 329, 341
Eam1104I	CTCTTC	1 cut(s)	277
EarI	CTCTTC	1 cut(s)	277
Eco31I	GGTCTC	1 cut(s)	303
Eco47I	GGWCC	3 cut(s)	71, 224, 336
EcoO109I	RGGNCCY	1 cut(s)	71
EcoRII	CCWGG	1 cut(s)	202
EgeI	GGCGCC	1 cut(s)	127
EheI	GGCGCC	1 cut(s)	127
Esp3I	CGTCTC	1 cut(s)	164
FaiI	YATR	4 cut(s)	196, 210, 249, 263
FbaI	TGATCA	1 cut(s)	177
FspBI	CTAG	2 cut(s)	50, 333
GlaI	GCGC	3 cut(s)	127, 266, 365
GsuI	CTGGAG	2 cut(s)	186, 313
HaeII	RGCGCY	1 cut(s)	129
HhaI	GCGC	3 cut(s)	128, 267, 366
Hin1I	GRCGYC	1 cut(s)	126
Hin6I	GCGC	3 cut(s)	126, 265, 364
HinP1I	GCGC	3 cut(s)	126, 265, 364
HinfI	GANTC	1 cut(s)	103
HphI	GGTGA	5 cut(s)	104, 137, 187, 312, 348
Hpy166II	GTNNAC	1 cut(s)	10
Hpy188III	TCNNGA	5 cut(s)	50, 302, 315, 327, 339
Hpy8I	GTNNAC	1 cut(s)	10
HpyAV	CCTTC	1 cut(s)	116
HpyCH4III	ACNGT	1 cut(s)	175
HpyCH4IV	ACGT	1 cut(s)	12
HpyCH4V	TGCA	1 cut(s)	85
HpyF10VI	GCNNNNNNNGC	1 cut(s)	32
HpyF3I	CTNAG	1 cut(s)	348
HpySE526I	ACGT	1 cut(s)	12
Hsp92I	GRCGYC	1 cut(s)	126
HspAI	GCGC	3 cut(s)	126, 265, 364
KasI	GGCGCC	1 cut(s)	125
Ksp22I	TGATCA	1 cut(s)	177
Kzo9I	GATC	8 cut(s)	142, 153, 177, 184, 286, 317, 329, 341
LpnPI	CCDG	9 cut(s)	29, 95, 189, 207, 216, 277, 312, 315, 352
LweI	GCATC	1 cut(s)	320
MaeI	CTAG	2 cut(s)	50, 333
MaeII	ACGT	1 cut(s)	12
MalI	GATC	8 cut(s)	144, 155, 179, 186, 288, 319, 331, 343
MbiI	CCGCTC	1 cut(s)	65
MboI	GATC	8 cut(s)	142, 153, 177, 184, 286, 317, 329, 341
MboII	GAAGA	4 cut(s)	131, 148, 281, 294
MfeI	CAATTG	1 cut(s)	228
MflI	RGATCY	3 cut(s)	153, 329, 341
MluCI	AATT	1 cut(s)	228
Mly113I	GGCGCC	1 cut(s)	126
MlyI	GAGTC	1 cut(s)	97
MnlI	CCTC	3 cut(s)	91, 288, 369
MspR9I	CCNGG	1 cut(s)	204
MunI	CAATTG	1 cut(s)	228
MvaI	CCWGG	1 cut(s)	204
MvnI	CGCG	2 cut(s)	267, 364
MwoI	GCNNNNNNNGC	1 cut(s)	32
NarI	GGCGCC	1 cut(s)	126
NdeII	GATC	8 cut(s)	142, 153, 177, 184, 286, 317, 329, 341
NlaIV	GGNNCC	1 cut(s)	127
NmeAIII	GCCGAG	1 cut(s)	154
Ple19I	CGATCG	1 cut(s)	187
PleI	GAGTC	1 cut(s)	97
PluTI	GGCGCC	1 cut(s)	129
PpsI	GAGTC	1 cut(s)	97
PpuMI	RGGWCCY	1 cut(s)	71
Psp5II	RGGWCCY	1 cut(s)	71
Psp6I	CCWGG	1 cut(s)	202
PspGI	CCWGG	1 cut(s)	202
PspN4I	GGNNCC	1 cut(s)	127
PspPI	GGNCC	3 cut(s)	71, 224, 336
PspPPI	RGGWCCY	1 cut(s)	71
PsuI	RGATCY	3 cut(s)	153, 329, 341
PvuI	CGATCG	1 cut(s)	187
Sau3AI	GATC	8 cut(s)	142, 153, 177, 184, 286, 317, 329, 341
Sau96I	GGNCC	3 cut(s)	71, 224, 336
SchI	GAGTC	1 cut(s)	97
ScrFI	CCNGG	1 cut(s)	204
SetI	ASST	8 cut(s)	15, 48, 73, 208, 262, 299, 338, 361
SfaNI	GCATC	1 cut(s)	320
SfoI	GGCGCC	1 cut(s)	127
SinI	GGWCC	3 cut(s)	71, 224, 336
SmlI	CTYRAG	1 cut(s)	66
SmoI	CTYRAG	1 cut(s)	66
Sse9I	AATT	1 cut(s)	228
SsiI	CCGC	2 cut(s)	63, 362
SspDI	GGCGCC	1 cut(s)	125
SspMI	CTAG	2 cut(s)	50, 333
StyD4I	CCNGG	1 cut(s)	202
TaaI	ACNGT	1 cut(s)	175
TaiI	ACGT	1 cut(s)	15
TaqI	TCGA	2 cut(s)	57, 183
TasI	AATT	1 cut(s)	228
TscAI	CASTG	2 cut(s)	170, 296
TspGWI	ACGGA	1 cut(s)	294
TspRI	CASTG	2 cut(s)	170, 296
VpaK11BI	GGWCC	3 cut(s)	71, 224, 336
XbaI	TCTAGA	1 cut(s)	49
XspI	CTAG	2 cut(s)	50, 333

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.