pycom07g18650

splicing factor

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
Physical Location & Seq
Forward (+)
21090620 .. 21093458
2839 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g18650.6

Sequence Viewer

Length: 1023 bp
ATGAATATTACTATCTTAAAATTTAATATTACGTCATCAGATGGAGTGTCCGAACCAAAGAGTGGAAGCTGCGAGCCGGCTCTTAAAATTAGGGTTGCGATTCGATTGTTTGAAACAGTCTCTCTCTTCAGAAATTTCAGATCCAAAAAGTACAATTTCTTCGAAGCTCTCTCGTTGTTCGTACGATTCACCGTCTTCAGGAAACTTACAGTGTTGGATATGAGGAGGTACAGCCCACAGTACTATAGTCCTCCGAGGAGGAGCTACGGCGGCGGCGGAGGAGGAGGAGGAGGAGGAGGAGGAGGTGGGCGAGGAAGGAGCCCCCCAAGAAGGCGCAAGGAGCAGAATAATGGAAGTCTTTTGGTCCGGAACATTCCTCTGGATTGCAGAGCTGAAGAGCTGAGAGCTCCCTTTGAAAGATATGGGGAAGTTCGGGATGTCTACATTCCCAAGGACTACTACACTGGGGAACCTCGAGGATTTGCATTTATTCAGTTTGTGGATTCTTATGAGGCCGCAGAGGCTCAGTATCATATGAATGGGAAGATTTTTGCTGGGAGGGAGATATCTGTGGTTGTTGCTGCAGAGACAAGGAAAAGGCCGGAGGAGATGCGCCAAAGGACTAGGATCATGGTGGAAGACGATCATCTTATTATGGAGGTTCACGTTCTCGTTCACGCTCTCCACGCTATCCATCAGGTTCTAGAAGTCGGTACCGCTCAAGGTCCTATTCTCCTGCTCCAAGACGCCGAGGCGACTCTATTTCACCAAGCAGAAGGCGGCGAGACAACCCAAGATCGACCCCGAGATCTTCCACCGGTGCGAGATGGTGATCGCAGACCCTATTCTCCAGGTTATGACAATGTTGCTGGACCAAATGAAAACGGTGATGGGTATGACAAGAAACCTATGCGCGAAGACAAGGACGGAAGAGATCACTGGAGGTCTCCTGATAGAGCATCAAGATCGCCATCTGGATCTAGGTCCAGATCTGCTGAGTTATCACCTGCGCGCAGCAGATGA

Protein Analysis

341

Amino Acids

38.34

Weight (kDa)

9.49

Isoelectric Point (pI)

61.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1015
AbsI CCTCGAGG 1 cut(s) 474
Acc36I ACCTGC 1 cut(s) 1015
Acc65I GGTACC 1 cut(s) 713
AccB1I GGYRCC 1 cut(s) 713
AccB7I CCANNNNNTGG 1 cut(s) 62
AccBSI CCGCTC 1 cut(s) 719
AccI GTMKAC 1 cut(s) 441
AccII CGCG 2 cut(s) 915, 1012
AccIII TCCGGA 1 cut(s) 366
AciI CCGC 6 cut(s) 270, 273, 276, 516, 717, 780
AclWI GGATC 3 cut(s) 135, 635, 985
AcsI RAATTY 2 cut(s) 20, 133
AcuI CTGAAG 3 cut(s) 112, 181, 414
AcyI GRCGYC 1 cut(s) 747
AfaI GTAC 5 cut(s) 152, 183, 230, 242, 715
AfiI CCNNNNNNNGG 3 cut(s) 62, 198, 330
AgeI ACCGGT 1 cut(s) 817
AgsI TTSAA 2 cut(s) 113, 416
AjnI CCWGG 1 cut(s) 850
AluBI AGCT 6 cut(s) 69, 167, 264, 392, 400, 407
AluI AGCT 6 cut(s) 69, 167, 264, 392, 400, 407
Alw21I GWGCWC 1 cut(s) 409
Alw26I GTCTC 4 cut(s) 124, 581, 779, 951
AlwI GGATC 3 cut(s) 135, 635, 985
Ama87I CYCGRG 2 cut(s) 474, 804
Aor13HI TCCGGA 1 cut(s) 366
AoxI GGCC 2 cut(s) 513, 599
ApeKI GCWGC 3 cut(s) 69, 581, 1014
ApoI RAATTY 2 cut(s) 20, 133
AsiGI ACCGGT 1 cut(s) 817
Asp718I GGTACC 1 cut(s) 713
AspLEI GCGC 5 cut(s) 336, 615, 915, 1012, 1014
AspS9I GGNCC 4 cut(s) 364, 725, 872, 984
AsuHPI GGTGA 5 cut(s) 181, 758, 842, 899, 996
AsuII TTCGAA 1 cut(s) 162
AvaI CYCGRG 2 cut(s) 474, 804
AvaII GGWCC 4 cut(s) 364, 725, 872, 984
BanI GGYRCC 1 cut(s) 713
BanII GRGCYC 2 cut(s) 323, 409
BarI GAAGNNNNNNTAC 2 cut(s) 143, 175
BbsI GAAGAC 3 cut(s) 187, 645, 924
Bbv12I GWGCWC 1 cut(s) 409
BbvI GCAGC 2 cut(s) 56, 568
BccI CCATC 5 cut(s) 35, 702, 821, 884, 979
BceAI ACGGC 1 cut(s) 283
BcgI CGANNNNNNTGC 2 cut(s) 948, 982
BciT130I CCWGG 1 cut(s) 852
BcoDI GTCTC 4 cut(s) 124, 581, 779, 951
BfaI CTAG 3 cut(s) 624, 704, 981
BfmI CTRYAG 2 cut(s) 244, 582
BfuAI ACCTGC 1 cut(s) 1015
BglI GCCNNNNNGGC 1 cut(s) 521
BglII AGATCT 2 cut(s) 808, 989
BisI GCNGC 7 cut(s) 70, 271, 274, 516, 582, 781, 1015
BlsI GCNGC 7 cut(s) 71, 272, 275, 517, 583, 782, 1016
BmcAI AGTACT 1 cut(s) 242
Bme1390I CCNGG 1 cut(s) 852
Bme18I GGWCC 4 cut(s) 364, 725, 872, 984
BmeT110I CYCGRG 2 cut(s) 474, 804
BmgT120I GGNCC 4 cut(s) 364, 725, 872, 984
BmiI GGNNCC 3 cut(s) 320, 471, 715
BmrFI CCNGG 1 cut(s) 852
BmrI ACTGGG 1 cut(s) 474
BmsI GCATC 2 cut(s) 600, 968
BmuI ACTGGG 1 cut(s) 474
BpiI GAAGAC 3 cut(s) 187, 645, 924
BpmI CTGGAG 2 cut(s) 834, 961
Bpu14I TTCGAA 1 cut(s) 162
BpuEI CTTGAG 1 cut(s) 705
BsaBI GATNNNNATC 2 cut(s) 831, 970
BsaHI GRCGYC 1 cut(s) 747
BsaI GGTCTC 1 cut(s) 951
BsaJI CCNNGG 3 cut(s) 254, 450, 750
BsaWI WCCGGW 2 cut(s) 366, 817
Bsc4I CCNNNNNNNGG 3 cut(s) 62, 198, 330
Bse118I RCCGGY 2 cut(s) 76, 817
Bse1I ACTGG 2 cut(s) 469, 944
Bse8I GATNNNNATC 2 cut(s) 831, 970
BseAI TCCGGA 1 cut(s) 366
BseBI CCWGG 1 cut(s) 852
BseDI CCNNGG 3 cut(s) 254, 450, 750
BseGI GGATG 1 cut(s) 442
BseJI GATNNNNATC 2 cut(s) 831, 970
BseLI CCNNNNNNNGG 3 cut(s) 62, 198, 330
BseMII CTCAG 3 cut(s) 392, 539, 987
BseNI ACTGG 2 cut(s) 469, 944
BsePI GCGCGC 1 cut(s) 1010
BseXI GCAGC 2 cut(s) 56, 568
BseYI CCCAGC 1 cut(s) 554
Bsh1236I CGCG 2 cut(s) 915, 1012
BshFI GGCC 2 cut(s) 515, 601
BshNI GGYRCC 1 cut(s) 713
BshTI ACCGGT 1 cut(s) 817
BsiHKAI GWGCWC 1 cut(s) 409
BsiHKCI CYCGRG 2 cut(s) 474, 804
BsiSI CCGG 4 cut(s) 77, 367, 602, 818
BsiWI CGTACG 1 cut(s) 181
BslI CCNNNNNNNGG 3 cut(s) 62, 198, 330
BsmAI GTCTC 4 cut(s) 124, 581, 779, 951
BsnI GGCC 2 cut(s) 515, 601
Bso31I GGTCTC 1 cut(s) 951
BsoBI CYCGRG 2 cut(s) 474, 804
Bsp119I TTCGAA 1 cut(s) 162
Bsp1286I GDGCHC 2 cut(s) 323, 409
Bsp13I TCCGGA 1 cut(s) 366
BspACI CCGC 6 cut(s) 270, 273, 276, 516, 717, 780
BspANI GGCC 2 cut(s) 515, 601
BspCNI CTCAG 3 cut(s) 393, 538, 988
BspEI TCCGGA 1 cut(s) 366
BspFNI CGCG 2 cut(s) 915, 1012
BspLI GGNNCC 3 cut(s) 320, 471, 715
BspMAI CTGCAG 1 cut(s) 586
BspMI ACCTGC 1 cut(s) 1015
BspPI GGATC 3 cut(s) 135, 635, 985
BspQI GCTCTTC 1 cut(s) 390
BspT104I TTCGAA 1 cut(s) 162
BspT107I GGYRCC 1 cut(s) 713
BspTNI GGTCTC 1 cut(s) 951
BsrBI CCGCTC 1 cut(s) 719
BsrFI RCCGGY 2 cut(s) 76, 817
BsrI ACTGG 2 cut(s) 469, 944
BssAI RCCGGY 2 cut(s) 76, 817
BssECI CCNNGG 3 cut(s) 254, 450, 750
BssHII GCGCGC 1 cut(s) 1010
BssNI GRCGYC 1 cut(s) 747
BssT1I CCWWGG 1 cut(s) 450
Bst2UI CCWGG 1 cut(s) 852
Bst4CI ACNGT 5 cut(s) 118, 193, 211, 240, 887
Bst6I CTCTTC 3 cut(s) 131, 390, 925
BstACI GRCGYC 1 cut(s) 747
BstBI TTCGAA 1 cut(s) 162
BstC8I GCNNGC 3 cut(s) 74, 78, 1012
BstDEI CTNAG 3 cut(s) 401, 525, 996
BstF5I GGATG 1 cut(s) 442
BstFNI CGCG 2 cut(s) 915, 1012
BstHHI GCGC 5 cut(s) 336, 615, 915, 1012, 1014
BstMAI GTCTC 4 cut(s) 124, 581, 779, 951
BstMWI GCNNNNNNNGC 4 cut(s) 270, 340, 521, 686
BstNI CCWGG 1 cut(s) 852
BstSCI CCNGG 1 cut(s) 850
BstSFI CTRYAG 2 cut(s) 244, 582
BstUI CGCG 2 cut(s) 915, 1012
BstV1I GCAGC 2 cut(s) 56, 568
BstV2I GAAGAC 3 cut(s) 187, 645, 924
BstX2I RGATCY 4 cut(s) 140, 808, 977, 989
BstYI RGATCY 4 cut(s) 140, 808, 977, 989
BsuRI GGCC 2 cut(s) 515, 601
BtsCI GGATG 1 cut(s) 442
BtsIMutI CAGTG 3 cut(s) 216, 462, 937
BveI ACCTGC 1 cut(s) 1015
Cac8I GCNNGC 3 cut(s) 74, 78, 1012
CfoI GCGC 5 cut(s) 336, 615, 915, 1012, 1014
Cfr10I RCCGGY 2 cut(s) 76, 817
Cfr13I GGNCC 4 cut(s) 364, 725, 872, 984
CseI GACGC 1 cut(s) 755
Csp6I GTAC 5 cut(s) 151, 182, 229, 241, 714
CspAI ACCGGT 1 cut(s) 817
CviAII CATG 1 cut(s) 631
CviQI GTAC 5 cut(s) 151, 182, 229, 241, 714
DdeI CTNAG 3 cut(s) 401, 525, 996
Eam1104I CTCTTC 3 cut(s) 131, 390, 925
EarI CTCTTC 3 cut(s) 131, 390, 925
EciI GGCGGA 1 cut(s) 291
Ecl136II GAGCTC 1 cut(s) 407
Eco130I CCWWGG 1 cut(s) 450
Eco24I GRGCYC 2 cut(s) 323, 409
Eco31I GGTCTC 1 cut(s) 951
Eco32I GATATC 1 cut(s) 567
Eco47I GGWCC 4 cut(s) 364, 725, 872, 984
Eco53kI GAGCTC 1 cut(s) 407
Eco57I CTGAAG 3 cut(s) 112, 181, 414
Eco88I CYCGRG 2 cut(s) 474, 804
EcoICRI GAGCTC 1 cut(s) 407
EcoO109I RGGNCCY 1 cut(s) 725
EcoRII CCWGG 1 cut(s) 850
EcoRV GATATC 1 cut(s) 567
EcoT14I CCWWGG 1 cut(s) 450
EcoT38I GRGCYC 2 cut(s) 323, 409
ErhI CCWWGG 1 cut(s) 450
FaeI CATG 1 cut(s) 634
FatI CATG 1 cut(s) 630
FauNDI CATATG 1 cut(s) 534
FblI GTMKAC 1 cut(s) 441
Fnu4HI GCNGC 7 cut(s) 70, 271, 274, 516, 582, 781, 1015
FokI GGATG 1 cut(s) 449
FriOI GRGCYC 2 cut(s) 323, 409
Fsp4HI GCNGC 7 cut(s) 70, 271, 274, 516, 582, 781, 1015
FspBI CTAG 3 cut(s) 624, 704, 981
GlaI GCGC 5 cut(s) 335, 614, 914, 1011, 1013
GluI GCNGC 7 cut(s) 70, 271, 274, 516, 582, 781, 1015
GsaI CCCAGC 1 cut(s) 558
GsuI CTGGAG 2 cut(s) 834, 961
HaeIII GGCC 2 cut(s) 515, 601
HapII CCGG 4 cut(s) 77, 367, 602, 818
HgaI GACGC 1 cut(s) 755
HhaI GCGC 5 cut(s) 336, 615, 915, 1012, 1014
Hin1I GRCGYC 1 cut(s) 747
Hin1II CATG 1 cut(s) 634
Hin6I GCGC 5 cut(s) 334, 613, 913, 1010, 1012
HinP1I GCGC 5 cut(s) 334, 613, 913, 1010, 1012
HinfI GANTC 4 cut(s) 100, 186, 503, 757
HpaII CCGG 4 cut(s) 77, 367, 602, 818
HphI GGTGA 5 cut(s) 181, 758, 842, 899, 996
Hpy166II GTNNAC 3 cut(s) 442, 664, 676
Hpy188I TCNGA 5 cut(s) 40, 52, 131, 140, 255
Hpy188III TCNNGA 9 cut(s) 199, 367, 380, 434, 704, 950, 963, 975, 987
Hpy8I GTNNAC 3 cut(s) 442, 664, 676
HpyAV CCTTC 3 cut(s) 309, 324, 770
HpyCH4III ACNGT 5 cut(s) 118, 193, 211, 240, 887
HpyCH4IV ACGT 2 cut(s) 32, 666
HpyCH4V TGCA 3 cut(s) 387, 485, 584
HpyF10VI GCNNNNNNNGC 4 cut(s) 270, 340, 521, 686
HpyF3I CTNAG 3 cut(s) 401, 525, 996
HpySE526I ACGT 2 cut(s) 32, 666
Hsp92I GRCGYC 1 cut(s) 747
Hsp92II CATG 1 cut(s) 634
HspAI GCGC 5 cut(s) 334, 613, 913, 1010, 1012
Kpn2I TCCGGA 1 cut(s) 366
KpnI GGTACC 1 cut(s) 717
KroI GCCGGC 1 cut(s) 76
KroNI GCCGGC 1 cut(s) 78
LguI GCTCTTC 1 cut(s) 390
LmnI GCTCC 5 cut(s) 261, 318, 340, 412, 744
Lsp1109I GCAGC 2 cut(s) 56, 568
LweI GCATC 2 cut(s) 600, 968
MaeI CTAG 3 cut(s) 624, 704, 981
MaeII ACGT 2 cut(s) 32, 666
MbiI CCGCTC 1 cut(s) 719
MboII GAAGA 9 cut(s) 118, 151, 187, 407, 556, 650, 803, 929, 942
MflI RGATCY 4 cut(s) 140, 808, 977, 989
MhlI GDGCHC 2 cut(s) 323, 409
MluCI AATT 4 cut(s) 20, 87, 133, 154
MlyI GAGTC 1 cut(s) 751
MmeI TCCRAC 1 cut(s) 195
MroI TCCGGA 1 cut(s) 366
MroNI GCCGGC 1 cut(s) 76
MseI TTAA 3 cut(s) 17, 24, 84
MslI CAYNNNNRTG 1 cut(s) 537
MspI CCGG 4 cut(s) 77, 367, 602, 818
MspR9I CCNGG 1 cut(s) 852
MvaI CCWGG 1 cut(s) 852
MvnI CGCG 2 cut(s) 915, 1012
MwoI GCNNNNNNNGC 4 cut(s) 270, 340, 521, 686
NaeI GCCGGC 1 cut(s) 78
NdeI CATATG 1 cut(s) 534
NgoMIV GCCGGC 1 cut(s) 76
NlaIII CATG 1 cut(s) 634
NlaIV GGNNCC 3 cut(s) 320, 471, 715
NmeAIII GCCGAG 1 cut(s) 775
NspV TTCGAA 1 cut(s) 162
PaeR7I CTCGAG 1 cut(s) 474
PaqCI CACCTGC 1 cut(s) 1015
PauI GCGCGC 1 cut(s) 1010
PciSI GCTCTTC 1 cut(s) 390
PdiI GCCGGC 1 cut(s) 78
PfeI GAWTC 3 cut(s) 100, 186, 503
Pfl23II CGTACG 1 cut(s) 181
PflMI CCANNNNNTGG 1 cut(s) 62
PinAI ACCGGT 1 cut(s) 817
PkrI GCNGC 7 cut(s) 71, 272, 275, 517, 583, 782, 1016
PleI GAGTC 1 cut(s) 751
PpsI GAGTC 1 cut(s) 751
PpuMI RGGWCCY 1 cut(s) 725
Psp124BI GAGCTC 1 cut(s) 409
Psp5II RGGWCCY 1 cut(s) 725
Psp6I CCWGG 1 cut(s) 850
PspFI CCCAGC 1 cut(s) 554
PspGI CCWGG 1 cut(s) 850
PspLI CGTACG 1 cut(s) 181
PspN4I GGNNCC 3 cut(s) 320, 471, 715
PspPI GGNCC 4 cut(s) 364, 725, 872, 984
PspPPI RGGWCCY 1 cut(s) 725
PspXI VCTCGAGB 1 cut(s) 474
PstI CTGCAG 1 cut(s) 586
PsuI RGATCY 4 cut(s) 140, 808, 977, 989
PteI GCGCGC 1 cut(s) 1010
RsaI GTAC 5 cut(s) 152, 183, 230, 242, 715
RsaNI GTAC 5 cut(s) 151, 182, 229, 241, 714
RseI CAYNNNNRTG 1 cut(s) 537
SacI GAGCTC 1 cut(s) 409
SapI GCTCTTC 1 cut(s) 390
SaqAI TTAA 3 cut(s) 17, 24, 84
SatI GCNGC 7 cut(s) 70, 271, 274, 516, 582, 781, 1015
Sau96I GGNCC 4 cut(s) 364, 725, 872, 984
ScaI AGTACT 1 cut(s) 242
SchI GAGTC 1 cut(s) 751
ScrFI CCNGG 1 cut(s) 852
SduI GDGCHC 2 cut(s) 323, 409
SfaNI GCATC 2 cut(s) 600, 968
SfcI CTRYAG 2 cut(s) 244, 582
Sfr274I CTCGAG 1 cut(s) 474
SfuI TTCGAA 1 cut(s) 162
SgrAI CRCCGGYG 1 cut(s) 817
SinI GGWCC 4 cut(s) 364, 725, 872, 984
SlaI CTCGAG 1 cut(s) 474
SmiMI CAYNNNNRTG 1 cut(s) 537
SmlI CTYRAG 2 cut(s) 474, 720
SmoI CTYRAG 2 cut(s) 474, 720
Sse9I AATT 4 cut(s) 20, 87, 133, 154
SsiI CCGC 6 cut(s) 270, 273, 276, 516, 717, 780
SspI AATATT 2 cut(s) 7, 28
SspMI CTAG 3 cut(s) 624, 704, 981
SstI GAGCTC 1 cut(s) 409
StyD4I CCNGG 1 cut(s) 850
StyI CCWWGG 1 cut(s) 450
TaaI ACNGT 5 cut(s) 118, 193, 211, 240, 887
TaiI ACGT 2 cut(s) 35, 669
TaqI TCGA 4 cut(s) 103, 162, 475, 799
TasI AATT 4 cut(s) 20, 87, 133, 154
TatI WGTACW 2 cut(s) 150, 240
TauI GCSGC 4 cut(s) 273, 276, 518, 783
TfiI GAWTC 3 cut(s) 100, 186, 503
Tru1I TTAA 3 cut(s) 17, 24, 84
Tru9I TTAA 3 cut(s) 17, 24, 84
TscAI CASTG 3 cut(s) 216, 469, 944
TseI GCWGC 3 cut(s) 69, 581, 1014
TspDTI ATGAA 3 cut(s) 17, 551, 894
TspGWI ACGGA 1 cut(s) 942
TspRI CASTG 3 cut(s) 216, 469, 944
Van91I CCANNNNNTGG 1 cut(s) 62
VpaK11BI GGWCC 4 cut(s) 364, 725, 872, 984
XapI RAATTY 2 cut(s) 20, 133
XbaI TCTAGA 1 cut(s) 703
XhoI CTCGAG 1 cut(s) 474
XmiI GTMKAC 1 cut(s) 441
XspI CTAG 3 cut(s) 624, 704, 981
ZrmI AGTACT 1 cut(s) 242
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.