Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0008030

Physical Location & Seq

Genomic Coordinates Reverse (-)

1990694 .. 1991479

Gene Structure 786 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG013900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 276 bp

ATGGAGCTCGACCACATCAGCGGGACATTTGGAGAATCAAGTGTGAATATGAGGAGGTACAACCCAGAGTACTACAGTCCTCCGAGGAGAGGCTACGGCTGCGGCGGTGGTGGCCGGGGAAGAAGCCCGCTGAGGAAGCGCAGGGAGCAGAATAACGGAAGCCTTTTGGTCCGGAACATTCCTCTGGATTGCAGGCTGGAAGAGCTAAGGGTTCCCTTTGAGAGATTCAGCCTTGTTCGGGATGTCTACATCCCCAAGGATTACTACACTGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0031974 GO:0031981 GO:0034641 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0050896 GO:0070013 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

91

Amino Acids

10.57

Weight (kDa)

9.56

Isoelectric Point (pI)

75.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008030)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55460
fragaria_vesca	FvH4_7g22601 FvH4_7g22602
malus_domestica	MD01G1135000.v1.1 MD07G1199700.v1.1
prunus_persica	Prupe.2G236400_v2.0.a1 Prupe.2G236400_v2.0.a1 Prupe.2G236400_v2.0.a1 Prupe.2G236400_v2.0.a1
pyrus_communis	pycom01g15570 pycom07g18650
rosa_chinensis	RchiOBHm_Chr1g0367721
rosa_laevigata	RLG00000027268
rosa_multiflora	Rmu_co8328167.1_g000001 Rmu_sc0008470.1_g000003 Rmu_sc0033554.1_g000001
rosa_roxburghii	Rroxscaffold_4G00289280
rosa_rugosa	Rorug01G0336200
rosa_samantha	Rh1AG343300 Rh1BG305000 Rh1CG320700 Rh1DG337300 Rh6BG013900
rosa_wichuraiana	Rw1G030550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	246
AccIII	TCCGGA	1 cut(s)	171
AciI	CCGC	4 cut(s)	21, 102, 105, 128
AcoI	YGGCCR	1 cut(s)	112
AdeI	CACNNNGTG	1 cut(s)	273
AfaI	GTAC	2 cut(s)	59, 71
AfiI	CCNNNNNNNGG	2 cut(s)	89, 238
AluBI	AGCT	2 cut(s)	7, 205
AluI	AGCT	2 cut(s)	7, 205
Alw21I	GWGCWC	1 cut(s)	9
Aor13HI	TCCGGA	1 cut(s)	171
AoxI	GGCC	1 cut(s)	112
ApeKI	GCWGC	1 cut(s)	99
AspLEI	GCGC	1 cut(s)	141
AspS9I	GGNCC	1 cut(s)	169
AsuC2I	CCSGG	1 cut(s)	116
AvaII	GGWCC	1 cut(s)	169
BanII	GRGCYC	1 cut(s)	9
Bbv12I	GWGCWC	1 cut(s)	9
BbvCI	CCTCAGC	1 cut(s)	131
BbvI	GCAGC	1 cut(s)	86
BceAI	ACGGC	1 cut(s)	112
BcnI	CCSGG	1 cut(s)	116
BfmI	CTRYAG	1 cut(s)	73
BisI	GCNGC	2 cut(s)	100, 103
BlsI	GCNGC	2 cut(s)	101, 104
BmcAI	AGTACT	1 cut(s)	71
Bme1390I	CCNGG	1 cut(s)	116
Bme18I	GGWCC	1 cut(s)	169
BmgT120I	GGNCC	1 cut(s)	169
BmiI	GGNNCC	1 cut(s)	213
BmrFI	CCNGG	1 cut(s)	116
Bpu10I	CCTNAGC	2 cut(s)	131, 206
BpuMI	CCSGG	1 cut(s)	116
BsaJI	CCNNGG	3 cut(s)	83, 115, 255
BsaWI	WCCGGW	1 cut(s)	171
Bsc4I	CCNNNNNNNGG	2 cut(s)	89, 238
Bse1I	ACTGG	1 cut(s)	274
BseAI	TCCGGA	1 cut(s)	171
BseDI	CCNNGG	3 cut(s)	83, 115, 255
BseGI	GGATG	2 cut(s)	247, 249
BseLI	CCNNNNNNNGG	2 cut(s)	89, 238
BseMII	CTCAG	1 cut(s)	122
BseNI	ACTGG	1 cut(s)	274
BseRI	GAGGAG	2 cut(s)	67, 100
BseXI	GCAGC	1 cut(s)	86
BshFI	GGCC	1 cut(s)	114
BsiHKAI	GWGCWC	1 cut(s)	9
BsiSI	CCGG	2 cut(s)	115, 172
BslFI	GGGAC	1 cut(s)	37
BslI	CCNNNNNNNGG	2 cut(s)	89, 238
BsmFI	GGGAC	1 cut(s)	37
BsnI	GGCC	1 cut(s)	114
Bsp1286I	GDGCHC	1 cut(s)	9
Bsp13I	TCCGGA	1 cut(s)	171
BspACI	CCGC	4 cut(s)	21, 102, 105, 128
BspANI	GGCC	1 cut(s)	114
BspCNI	CTCAG	1 cut(s)	123
BspEI	TCCGGA	1 cut(s)	171
BspLI	GGNNCC	1 cut(s)	213
BspQI	GCTCTTC	1 cut(s)	195
BsrI	ACTGG	1 cut(s)	274
BssECI	CCNNGG	3 cut(s)	83, 115, 255
BssT1I	CCWWGG	1 cut(s)	255
Bst4CI	ACNGT	1 cut(s)	77
Bst6I	CTCTTC	1 cut(s)	195
BstC8I	GCNNGC	2 cut(s)	128, 194
BstDEI	CTNAG	2 cut(s)	131, 206
BstF5I	GGATG	2 cut(s)	247, 249
BstHHI	GCGC	1 cut(s)	141
BstMWI	GCNNNNNNNGC	5 cut(s)	99, 111, 136, 145, 202
BstSCI	CCNGG	1 cut(s)	114
BstSFI	CTRYAG	1 cut(s)	73
BstV1I	GCAGC	1 cut(s)	86
BsuRI	GGCC	1 cut(s)	114
BtsCI	GGATG	2 cut(s)	247, 249
BtsIMutI	CAGTG	1 cut(s)	267
Cac8I	GCNNGC	2 cut(s)	128, 194
CfoI	GCGC	1 cut(s)	141
Cfr13I	GGNCC	1 cut(s)	169
Csp6I	GTAC	2 cut(s)	58, 70
CviJI	RGCY	9 cut(s)	7, 93, 99, 114, 126, 162, 196, 205, 231
CviKI_1	RGCY	9 cut(s)	7, 93, 99, 114, 126, 162, 196, 205, 231
CviQI	GTAC	2 cut(s)	58, 70
DdeI	CTNAG	2 cut(s)	131, 206
DraIII	CACNNNGTG	1 cut(s)	273
EaeI	YGGCCR	1 cut(s)	112
Eam1104I	CTCTTC	1 cut(s)	195
EarI	CTCTTC	1 cut(s)	195
Ecl136II	GAGCTC	1 cut(s)	7
Eco130I	CCWWGG	1 cut(s)	255
Eco24I	GRGCYC	1 cut(s)	9
Eco47I	GGWCC	1 cut(s)	169
Eco53kI	GAGCTC	1 cut(s)	7
EcoICRI	GAGCTC	1 cut(s)	7
EcoT14I	CCWWGG	1 cut(s)	255
EcoT38I	GRGCYC	1 cut(s)	9
ErhI	CCWWGG	1 cut(s)	255
FaiI	YATR	1 cut(s)	50
FaqI	GGGAC	1 cut(s)	37
FauI	CCCGC	2 cut(s)	14, 135
FblI	GTMKAC	1 cut(s)	246
Fnu4HI	GCNGC	2 cut(s)	100, 103
FokI	GGATG	2 cut(s)	236, 254
FriOI	GRGCYC	1 cut(s)	9
Fsp4HI	GCNGC	2 cut(s)	100, 103
GlaI	GCGC	1 cut(s)	140
GluI	GCNGC	2 cut(s)	100, 103
HaeIII	GGCC	1 cut(s)	114
HapII	CCGG	2 cut(s)	115, 172
HhaI	GCGC	1 cut(s)	141
Hin6I	GCGC	1 cut(s)	139
HinP1I	GCGC	1 cut(s)	139
HinfI	GANTC	2 cut(s)	35, 225
HpaII	CCGG	2 cut(s)	115, 172
Hpy166II	GTNNAC	1 cut(s)	247
Hpy188I	TCNGA	1 cut(s)	84
Hpy188III	TCNNGA	3 cut(s)	172, 185, 239
Hpy8I	GTNNAC	1 cut(s)	247
HpyCH4III	ACNGT	1 cut(s)	77
HpyCH4V	TGCA	1 cut(s)	192
HpyF10VI	GCNNNNNNNGC	5 cut(s)	99, 111, 136, 145, 202
HpyF3I	CTNAG	2 cut(s)	131, 206
HspAI	GCGC	1 cut(s)	139
Kpn2I	TCCGGA	1 cut(s)	171
LguI	GCTCTTC	1 cut(s)	195
LmnI	GCTCC	2 cut(s)	4, 145
LpnPI	CCDG	8 cut(s)	78, 127, 128, 170, 178, 182, 185, 255
Lsp1109I	GCAGC	1 cut(s)	86
MboII	GAAGA	2 cut(s)	132, 212
MhlI	GDGCHC	1 cut(s)	9
MnlI	CCTC	7 cut(s)	45, 48, 78, 83, 90, 126, 192
MroI	TCCGGA	1 cut(s)	171
MspA1I	CMGCKG	2 cut(s)	21, 130
MspI	CCGG	2 cut(s)	115, 172
MspR9I	CCNGG	1 cut(s)	116
MwoI	GCNNNNNNNGC	5 cut(s)	99, 111, 136, 145, 202
NciI	CCSGG	1 cut(s)	116
NlaIV	GGNNCC	1 cut(s)	213
PciSI	GCTCTTC	1 cut(s)	195
PfeI	GAWTC	2 cut(s)	35, 225
PkrI	GCNGC	2 cut(s)	101, 104
Psp124BI	GAGCTC	1 cut(s)	9
PspN4I	GGNNCC	1 cut(s)	213
PspPI	GGNCC	1 cut(s)	169
RsaI	GTAC	2 cut(s)	59, 71
RsaNI	GTAC	2 cut(s)	58, 70
SacI	GAGCTC	1 cut(s)	9
SapI	GCTCTTC	1 cut(s)	195
SatI	GCNGC	2 cut(s)	100, 103
Sau96I	GGNCC	1 cut(s)	169
ScaI	AGTACT	1 cut(s)	71
ScrFI	CCNGG	1 cut(s)	116
SduI	GDGCHC	1 cut(s)	9
SetI	ASST	3 cut(s)	9, 59, 207
SfcI	CTRYAG	1 cut(s)	73
SinI	GGWCC	1 cut(s)	169
SsiI	CCGC	4 cut(s)	21, 102, 105, 128
SstI	GAGCTC	1 cut(s)	9
StyD4I	CCNGG	1 cut(s)	114
StyI	CCWWGG	1 cut(s)	255
TaaI	ACNGT	1 cut(s)	77
TaqI	TCGA	1 cut(s)	9
TatI	WGTACW	1 cut(s)	69
TauI	GCSGC	1 cut(s)	105
TfiI	GAWTC	2 cut(s)	35, 225
TscAI	CASTG	1 cut(s)	274
TseI	GCWGC	1 cut(s)	99
TspGWI	ACGGA	1 cut(s)	171
TspRI	CASTG	1 cut(s)	274
VpaK11BI	GGWCC	1 cut(s)	169
XmiI	GTMKAC	1 cut(s)	246
ZrmI	AGTACT	1 cut(s)	71

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.