Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8328167.1

Orthogroup ID

OG0008030

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 426

Gene Structure 426 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8328167.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 176 bp

atgaagcgaagggaacctcggggatttgcattcgtgcaatttgtggattcttatgaagctgcagaggctcagtatcatatgaatgggaaaatttttgctgggagggagatatctgtggttcttgctgcagagacaaggaaaagaccagaggagatgcgccaaagaactagggtcag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000244 GO:0000245 GO:0000375 GO:0000377 GO:0000381 GO:0000387 GO:0000395 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006376 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0008380 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010629 GO:0016043 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0019219 GO:0019222 GO:0019904 GO:0022607 GO:0022613 GO:0022618 GO:0031323 GO:0031324 GO:0031974 GO:0031981 GO:0033119 GO:0034622 GO:0034641 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043484 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045292 GO:0045934 GO:0046483 GO:0048024 GO:0048025 GO:0048519 GO:0048523 GO:0050684 GO:0050686 GO:0050733 GO:0050789 GO:0050794 GO:0050896 GO:0051082 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065003 GO:0065007 GO:0070013 GO:0071704 GO:0071826 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1903311 GO:1903312

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

58

Amino Acids

6.85

Weight (kDa)

10.13

Isoelectric Point (pI)

42.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008030)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55460
fragaria_vesca	FvH4_7g22601 FvH4_7g22602
malus_domestica	MD01G1135000.v1.1 MD07G1199700.v1.1
prunus_persica	Prupe.2G236400_v2.0.a1 Prupe.2G236400_v2.0.a1 Prupe.2G236400_v2.0.a1 Prupe.2G236400_v2.0.a1
pyrus_communis	pycom01g15570 pycom07g18650
rosa_chinensis	RchiOBHm_Chr1g0367721
rosa_laevigata	RLG00000027268
rosa_multiflora	Rmu_co8328167.1_g000001 Rmu_sc0008470.1_g000003 Rmu_sc0033554.1_g000001
rosa_roxburghii	Rroxscaffold_4G00289280
rosa_rugosa	Rorug01G0336200
rosa_samantha	Rh1AG343300 Rh1BG305000 Rh1CG320700 Rh1DG337300 Rh6BG013900
rosa_wichuraiana	Rw1G030550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	90
AluBI	AGCT	1 cut(s)	59
AluI	AGCT	1 cut(s)	59
Alw26I	GTCTC	1 cut(s)	125
Ama87I	CYCGRG	1 cut(s)	18
ApeKI	GCWGC	2 cut(s)	59, 125
ApoI	RAATTY	1 cut(s)	90
AspLEI	GCGC	1 cut(s)	159
AvaI	CYCGRG	1 cut(s)	18
BbvI	GCAGC	2 cut(s)	46, 112
BcoDI	GTCTC	1 cut(s)	125
BfaI	CTAG	1 cut(s)	168
BfmI	CTRYAG	2 cut(s)	60, 126
BisI	GCNGC	2 cut(s)	60, 126
BlsI	GCNGC	2 cut(s)	61, 127
BmeT110I	CYCGRG	1 cut(s)	18
BmiI	GGNNCC	1 cut(s)	15
BmsI	GCATC	1 cut(s)	144
BsaJI	CCNNGG	1 cut(s)	17
BseDI	CCNNGG	1 cut(s)	17
BseMII	CTCAG	1 cut(s)	83
BseRI	GAGGAG	1 cut(s)	164
BseXI	GCAGC	2 cut(s)	46, 112
BseYI	CCCAGC	1 cut(s)	98
BsiHKCI	CYCGRG	1 cut(s)	18
BsmAI	GTCTC	1 cut(s)	125
BsmI	GAATGC	1 cut(s)	29
BsoBI	CYCGRG	1 cut(s)	18
BspCNI	CTCAG	1 cut(s)	82
BspLI	GGNNCC	1 cut(s)	15
BspMAI	CTGCAG	2 cut(s)	64, 130
BssECI	CCNNGG	1 cut(s)	17
BstDEI	CTNAG	1 cut(s)	69
BstHHI	GCGC	1 cut(s)	159
BstMAI	GTCTC	1 cut(s)	125
BstMWI	GCNNNNNNNGC	1 cut(s)	65
BstSFI	CTRYAG	2 cut(s)	60, 126
BstV1I	GCAGC	2 cut(s)	46, 112
CfoI	GCGC	1 cut(s)	159
CviJI	RGCY	2 cut(s)	59, 68
CviKI_1	RGCY	2 cut(s)	59, 68
DdeI	CTNAG	1 cut(s)	69
Eco32I	GATATC	1 cut(s)	111
Eco88I	CYCGRG	1 cut(s)	18
EcoRV	GATATC	1 cut(s)	111
FaiI	YATR	3 cut(s)	54, 78, 80
FauNDI	CATATG	1 cut(s)	78
Fnu4HI	GCNGC	2 cut(s)	60, 126
Fsp4HI	GCNGC	2 cut(s)	60, 126
FspBI	CTAG	1 cut(s)	168
GlaI	GCGC	1 cut(s)	158
GluI	GCNGC	2 cut(s)	60, 126
GsaI	CCCAGC	1 cut(s)	102
HhaI	GCGC	1 cut(s)	159
Hin6I	GCGC	1 cut(s)	157
HinP1I	GCGC	1 cut(s)	157
HinfI	GANTC	1 cut(s)	47
HpyAV	CCTTC	1 cut(s)	3
HpyCH4V	TGCA	4 cut(s)	29, 37, 62, 128
HpyF10VI	GCNNNNNNNGC	1 cut(s)	65
HpyF3I	CTNAG	1 cut(s)	69
HspAI	GCGC	1 cut(s)	157
LpnPI	CCDG	2 cut(s)	84, 159
Lsp1109I	GCAGC	2 cut(s)	46, 112
LweI	GCATC	1 cut(s)	144
MaeI	CTAG	1 cut(s)	168
MluCI	AATT	2 cut(s)	38, 90
MnlI	CCTC	4 cut(s)	27, 58, 96, 142
MslI	CAYNNNNRTG	1 cut(s)	81
Mva1269I	GAATGC	1 cut(s)	29
MwoI	GCNNNNNNNGC	1 cut(s)	65
NdeI	CATATG	1 cut(s)	78
NlaIV	GGNNCC	1 cut(s)	15
PctI	GAATGC	1 cut(s)	29
PfeI	GAWTC	1 cut(s)	47
PkrI	GCNGC	2 cut(s)	61, 127
PspFI	CCCAGC	1 cut(s)	98
PspN4I	GGNNCC	1 cut(s)	15
PstI	CTGCAG	2 cut(s)	64, 130
RseI	CAYNNNNRTG	1 cut(s)	81
SatI	GCNGC	2 cut(s)	60, 126
SetI	ASST	2 cut(s)	19, 61
SfaNI	GCATC	1 cut(s)	144
SfcI	CTRYAG	2 cut(s)	60, 126
SgeI	CNNG	7 cut(s)	30, 32, 46, 111, 134, 147, 158
SmiMI	CAYNNNNRTG	1 cut(s)	81
Sse9I	AATT	2 cut(s)	38, 90
SspMI	CTAG	1 cut(s)	168
TasI	AATT	2 cut(s)	38, 90
TfiI	GAWTC	1 cut(s)	47
TseI	GCWGC	2 cut(s)	59, 125
TspDTI	ATGAA	3 cut(s)	17, 69, 95
XapI	RAATTY	1 cut(s)	90
XspI	CTAG	1 cut(s)	168

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.