Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0008030

Physical Location & Seq

Genomic Coordinates Forward (+)

17813727 .. 17815265

Gene Structure 1539 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g22602.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGTTTGAAGAGAATTATATAATTACACGAATGAATACAAGTTGGGTGAAGCCACAGTTGATTTCAAGTGCTTCTTATAATGTCACAAGAATTTGCCTTTCATACTTGACTTTAAAGAGAAGGGAACCTCGGGGATTTGCATTTGTACAATTTGTGGATTCTTATGAAGCTGCAGAAGCTCAGTATCATATGAATGGGAAGATTTTTGCTGGGAGAGAGATATCTGTGGTCCTTGCTGCAGAGACAAGGAAAAGACCAGAGGAGATGCGCCAAAGAACTAGGGTTAGAGGACCATCATCAGGCTATGGGGACAGAAGATCATCTCATTACGGACGTTCTCGTTCTCGGTCACGCTCTCCTCACTATCCATCAGGTTCTAGAAGTCGGTACCGCTCAAGGTCCTATTCTCCTGTTCCAAGAAGACGAGTTGACTCTGTTTCACCAGTTAGAAGGCGTGGTGACCATCCAAGATCACCTCGTGACCACCCAAGATCATCACGGGATTCTCCCCTTGAGAGAGGTGGTGATCATGAACGAAGGCCATATTCTCCTGGTTATGATAATGGTGCTGGGCAAGCTGAAAATGGAGATGGGTATGACAAGAAATCTAGGTATGATGAGGAGGTTGAACCACGAGGCAATTGGAGGTCTCCCGATAAAGCATCAAGATCACCATCTGGTTCTAGGTCCAGATCTGCTGAGTTATCACCTAGGCGCAGCAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000244 GO:0000245 GO:0000375 GO:0000377 GO:0000381 GO:0000387 GO:0000395 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006376 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0008380 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010629 GO:0016043 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0019219 GO:0019222 GO:0019904 GO:0022607 GO:0022613 GO:0022618 GO:0031323 GO:0031324 GO:0031974 GO:0031981 GO:0033119 GO:0034622 GO:0034641 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043484 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045292 GO:0045934 GO:0046483 GO:0048024 GO:0048025 GO:0048519 GO:0048523 GO:0050684 GO:0050686 GO:0050733 GO:0050789 GO:0050794 GO:0050896 GO:0051082 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065003 GO:0065007 GO:0070013 GO:0071704 GO:0071826 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1903311 GO:1903312

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

242

Amino Acids

27.82

Weight (kDa)

10.82

Isoelectric Point (pI)

98.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	39 - 74	3.3e-07	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0008030)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55460
fragaria_vesca	FvH4_7g22601 FvH4_7g22602
malus_domestica	MD01G1135000.v1.1 MD07G1199700.v1.1
prunus_persica	Prupe.2G236400_v2.0.a1 Prupe.2G236400_v2.0.a1 Prupe.2G236400_v2.0.a1 Prupe.2G236400_v2.0.a1
pyrus_communis	pycom01g15570 pycom07g18650
rosa_chinensis	RchiOBHm_Chr1g0367721
rosa_laevigata	RLG00000027268
rosa_multiflora	Rmu_co8328167.1_g000001 Rmu_sc0008470.1_g000003 Rmu_sc0033554.1_g000001
rosa_roxburghii	Rroxscaffold_4G00289280
rosa_rugosa	Rorug01G0336200
rosa_samantha	Rh1AG343300 Rh1BG305000 Rh1CG320700 Rh1DG337300 Rh6BG013900
rosa_wichuraiana	Rw1G030550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	78
Acc65I	GGTACC	1 cut(s)	387
AccB1I	GGYRCC	1 cut(s)	387
AccBSI	CCGCTC	1 cut(s)	393
AciI	CCGC	1 cut(s)	391
AcsI	RAATTY	1 cut(s)	90
AdeI	CACNNNGTG	1 cut(s)	479
AfaI	GTAC	2 cut(s)	147, 389
AfiI	CCNNNNNNNGG	1 cut(s)	299
AgsI	TTSAA	3 cut(s)	8, 66, 629
AjnI	CCWGG	1 cut(s)	550
AluBI	AGCT	3 cut(s)	170, 179, 578
AluI	AGCT	3 cut(s)	170, 179, 578
Alw26I	GTCTC	2 cut(s)	236, 654
Ama87I	CYCGRG	1 cut(s)	129
AoxI	GGCC	1 cut(s)	539
ApeKI	GCWGC	3 cut(s)	170, 236, 717
ApoI	RAATTY	1 cut(s)	90
Asp718I	GGTACC	1 cut(s)	387
AspA2I	CCTAGG	1 cut(s)	710
AspLEI	GCGC	2 cut(s)	270, 717
AspS9I	GGNCC	4 cut(s)	229, 290, 399, 687
AsuHPI	GGTGA	7 cut(s)	58, 432, 465, 470, 536, 663, 699
AvaI	CYCGRG	1 cut(s)	129
AvaII	GGWCC	4 cut(s)	229, 290, 399, 687
AvrII	CCTAGG	1 cut(s)	710
BanI	GGYRCC	1 cut(s)	387
BauI	CACGAG	2 cut(s)	477, 633
BbsI	GAAGAC	1 cut(s)	427
BbvI	GCAGC	2 cut(s)	157, 223
BccI	CCATC	5 cut(s)	301, 376, 471, 584, 682
BciT130I	CCWGG	1 cut(s)	552
BclI	TGATCA	1 cut(s)	526
BcoDI	GTCTC	2 cut(s)	236, 654
BfaI	CTAG	5 cut(s)	279, 378, 609, 684, 711
BfmI	CTRYAG	2 cut(s)	171, 237
BglII	AGATCT	1 cut(s)	692
BisI	GCNGC	3 cut(s)	171, 237, 718
BlnI	CCTAGG	1 cut(s)	710
BlsI	GCNGC	3 cut(s)	172, 238, 719
Bme1390I	CCNGG	1 cut(s)	552
Bme18I	GGWCC	4 cut(s)	229, 290, 399, 687
BmeT110I	CYCGRG	1 cut(s)	129
BmgT120I	GGNCC	4 cut(s)	229, 290, 399, 687
BmiI	GGNNCC	2 cut(s)	126, 389
BmrFI	CCNGG	1 cut(s)	552
BmsI	GCATC	2 cut(s)	255, 671
BpiI	GAAGAC	1 cut(s)	427
BpuEI	CTTGAG	2 cut(s)	379, 533
BsaBI	GATNNNNATC	1 cut(s)	673
BsaI	GGTCTC	1 cut(s)	654
BsaJI	CCNNGG	2 cut(s)	128, 710
Bsc4I	CCNNNNNNNGG	1 cut(s)	299
Bse1I	ACTGG	1 cut(s)	443
Bse8I	GATNNNNATC	1 cut(s)	673
BseBI	CCWGG	1 cut(s)	552
BseDI	CCNNGG	2 cut(s)	128, 710
BseGI	GGATG	1 cut(s)	463
BseJI	GATNNNNATC	1 cut(s)	673
BseLI	CCNNNNNNNGG	1 cut(s)	299
BseMII	CTCAG	2 cut(s)	194, 690
BseNI	ACTGG	1 cut(s)	443
BseRI	GAGGAG	3 cut(s)	275, 348, 635
BseXI	GCAGC	2 cut(s)	157, 223
BseYI	CCCAGC	2 cut(s)	209, 569
BshFI	GGCC	1 cut(s)	541
BshNI	GGYRCC	1 cut(s)	387
BsiHKCI	CYCGRG	1 cut(s)	129
BslFI	GGGAC	1 cut(s)	323
BslI	CCNNNNNNNGG	1 cut(s)	299
BsmAI	GTCTC	2 cut(s)	236, 654
BsmFI	GGGAC	1 cut(s)	323
BsnI	GGCC	1 cut(s)	541
Bso31I	GGTCTC	1 cut(s)	654
BsoBI	CYCGRG	1 cut(s)	129
Bsp1407I	TGTACA	1 cut(s)	145
Bsp143I	GATC	6 cut(s)	317, 470, 491, 526, 668, 692
BspACI	CCGC	1 cut(s)	391
BspANI	GGCC	1 cut(s)	541
BspCNI	CTCAG	2 cut(s)	193, 691
BspHI	TCATGA	1 cut(s)	529
BspLI	GGNNCC	2 cut(s)	126, 389
BspMAI	CTGCAG	2 cut(s)	175, 241
BspT107I	GGYRCC	1 cut(s)	387
BspTNI	GGTCTC	1 cut(s)	654
BsrBI	CCGCTC	1 cut(s)	393
BsrGI	TGTACA	1 cut(s)	145
BsrI	ACTGG	1 cut(s)	443
BssECI	CCNNGG	2 cut(s)	128, 710
BssMI	GATC	6 cut(s)	317, 470, 491, 526, 668, 692
BssSI	CACGAG	2 cut(s)	477, 633
BssT1I	CCWWGG	1 cut(s)	710
Bst2BI	CACGAG	2 cut(s)	477, 633
Bst2UI	CCWGG	1 cut(s)	552
Bst4CI	ACNGT	1 cut(s)	57
Bst6I	CTCTTC	1 cut(s)	3
BstAUI	TGTACA	1 cut(s)	145
BstC8I	GCNNGC	1 cut(s)	576
BstDEI	CTNAG	2 cut(s)	180, 699
BstEII	GGTNACC	1 cut(s)	458
BstF5I	GGATG	1 cut(s)	463
BstHHI	GCGC	2 cut(s)	270, 717
BstKTI	GATC	6 cut(s)	320, 473, 494, 529, 671, 695
BstMAI	GTCTC	2 cut(s)	236, 654
BstMBI	GATC	6 cut(s)	317, 470, 491, 526, 668, 692
BstMWI	GCNNNNNNNGC	2 cut(s)	176, 575
BstNI	CCWGG	1 cut(s)	552
BstPI	GGTNACC	1 cut(s)	458
BstSCI	CCNGG	1 cut(s)	550
BstSFI	CTRYAG	2 cut(s)	171, 237
BstV1I	GCAGC	2 cut(s)	157, 223
BstV2I	GAAGAC	1 cut(s)	427
BstX2I	RGATCY	1 cut(s)	692
BstYI	RGATCY	1 cut(s)	692
BsuRI	GGCC	1 cut(s)	541
BtsCI	GGATG	1 cut(s)	463
Cac8I	GCNNGC	1 cut(s)	576
CciI	TCATGA	1 cut(s)	529
CfoI	GCGC	2 cut(s)	270, 717
Cfr13I	GGNCC	4 cut(s)	229, 290, 399, 687
Csp6I	GTAC	2 cut(s)	146, 388
CviAII	CATG	1 cut(s)	530
CviJI	RGCY	6 cut(s)	52, 170, 179, 303, 541, 578
CviKI_1	RGCY	6 cut(s)	52, 170, 179, 303, 541, 578
CviQI	GTAC	2 cut(s)	146, 388
DdeI	CTNAG	2 cut(s)	180, 699
DpnI	GATC	6 cut(s)	319, 472, 493, 528, 670, 694
DpnII	GATC	6 cut(s)	317, 470, 491, 526, 668, 692
DraI	TTTAAA	1 cut(s)	114
DraIII	CACNNNGTG	1 cut(s)	479
Eam1104I	CTCTTC	1 cut(s)	3
EarI	CTCTTC	1 cut(s)	3
Eco130I	CCWWGG	1 cut(s)	710
Eco31I	GGTCTC	1 cut(s)	654
Eco32I	GATATC	1 cut(s)	222
Eco47I	GGWCC	4 cut(s)	229, 290, 399, 687
Eco88I	CYCGRG	1 cut(s)	129
Eco91I	GGTNACC	1 cut(s)	458
EcoO109I	RGGNCCY	1 cut(s)	399
EcoO65I	GGTNACC	1 cut(s)	458
EcoRII	CCWGG	1 cut(s)	550
EcoRV	GATATC	1 cut(s)	222
EcoT14I	CCWWGG	1 cut(s)	710
ErhI	CCWWGG	1 cut(s)	710
FaeI	CATG	1 cut(s)	533
FalI	AAGNNNNNCTT	2 cut(s)	58, 90
FaqI	GGGAC	1 cut(s)	323
FatI	CATG	1 cut(s)	529
FauNDI	CATATG	1 cut(s)	189
FbaI	TGATCA	1 cut(s)	526
Fnu4HI	GCNGC	3 cut(s)	171, 237, 718
FokI	GGATG	1 cut(s)	450
Fsp4HI	GCNGC	3 cut(s)	171, 237, 718
FspBI	CTAG	5 cut(s)	279, 378, 609, 684, 711
GlaI	GCGC	2 cut(s)	269, 716
GluI	GCNGC	3 cut(s)	171, 237, 718
GsaI	CCCAGC	2 cut(s)	213, 573
HaeIII	GGCC	1 cut(s)	541
HhaI	GCGC	2 cut(s)	270, 717
Hin1II	CATG	1 cut(s)	533
Hin6I	GCGC	2 cut(s)	268, 715
HinP1I	GCGC	2 cut(s)	268, 715
HincII	GTYRAC	1 cut(s)	430
HindII	GTYRAC	1 cut(s)	430
HinfI	GANTC	3 cut(s)	158, 431, 503
HphI	GGTGA	7 cut(s)	58, 432, 465, 470, 536, 663, 699
Hpy166II	GTNNAC	1 cut(s)	430
Hpy188III	TCNNGA	6 cut(s)	378, 479, 530, 653, 666, 690
Hpy8I	GTNNAC	1 cut(s)	430
HpyAV	CCTTC	3 cut(s)	114, 444, 531
HpyCH4III	ACNGT	1 cut(s)	57
HpyCH4IV	ACGT	1 cut(s)	334
HpyCH4V	TGCA	3 cut(s)	140, 173, 239
HpyF10VI	GCNNNNNNNGC	2 cut(s)	176, 575
HpyF3I	CTNAG	2 cut(s)	180, 699
HpySE526I	ACGT	1 cut(s)	334
Hsp92II	CATG	1 cut(s)	533
HspAI	GCGC	2 cut(s)	268, 715
KpnI	GGTACC	1 cut(s)	391
Ksp22I	TGATCA	1 cut(s)	526
Kzo9I	GATC	6 cut(s)	317, 470, 491, 526, 668, 692
Lsp1109I	GCAGC	2 cut(s)	157, 223
LweI	GCATC	2 cut(s)	255, 671
MaeI	CTAG	5 cut(s)	279, 378, 609, 684, 711
MaeII	ACGT	1 cut(s)	334
MaeIII	GTNAC	4 cut(s)	82, 348, 458, 479
MalI	GATC	6 cut(s)	319, 472, 493, 528, 670, 694
MbiI	CCGCTC	1 cut(s)	393
MboI	GATC	6 cut(s)	317, 470, 491, 526, 668, 692
MboII	GAAGA	4 cut(s)	20, 211, 327, 432
MfeI	CAATTG	1 cut(s)	640
MflI	RGATCY	1 cut(s)	692
MluCI	AATT	5 cut(s)	13, 21, 90, 149, 640
MlyI	GAGTC	1 cut(s)	425
MseI	TTAA	1 cut(s)	113
MslI	CAYNNNNRTG	1 cut(s)	192
MspR9I	CCNGG	1 cut(s)	552
MunI	CAATTG	1 cut(s)	640
MvaI	CCWGG	1 cut(s)	552
MwoI	GCNNNNNNNGC	2 cut(s)	176, 575
NdeI	CATATG	1 cut(s)	189
NdeII	GATC	6 cut(s)	317, 470, 491, 526, 668, 692
NlaIII	CATG	1 cut(s)	533
NlaIV	GGNNCC	2 cut(s)	126, 389
NmuCI	GTSAC	4 cut(s)	82, 348, 458, 479
PagI	TCATGA	1 cut(s)	529
PfeI	GAWTC	2 cut(s)	158, 503
PkrI	GCNGC	3 cut(s)	172, 238, 719
PleI	GAGTC	1 cut(s)	425
PpsI	GAGTC	1 cut(s)	425
PpuMI	RGGWCCY	1 cut(s)	399
PsiI	TTATAA	1 cut(s)	78
Psp5II	RGGWCCY	1 cut(s)	399
Psp6I	CCWGG	1 cut(s)	550
PspEI	GGTNACC	1 cut(s)	458
PspFI	CCCAGC	2 cut(s)	209, 569
PspGI	CCWGG	1 cut(s)	550
PspN4I	GGNNCC	2 cut(s)	126, 389
PspPI	GGNCC	4 cut(s)	229, 290, 399, 687
PspPPI	RGGWCCY	1 cut(s)	399
PstI	CTGCAG	2 cut(s)	175, 241
PsuI	RGATCY	1 cut(s)	692
RsaI	GTAC	2 cut(s)	147, 389
RsaNI	GTAC	2 cut(s)	146, 388
RseI	CAYNNNNRTG	1 cut(s)	192
SaqAI	TTAA	1 cut(s)	113
SatI	GCNGC	3 cut(s)	171, 237, 718
Sau3AI	GATC	6 cut(s)	317, 470, 491, 526, 668, 692
Sau96I	GGNCC	4 cut(s)	229, 290, 399, 687
SchI	GAGTC	1 cut(s)	425
ScrFI	CCNGG	1 cut(s)	552
SfaNI	GCATC	2 cut(s)	255, 671
SfcI	CTRYAG	2 cut(s)	171, 237
SinI	GGWCC	4 cut(s)	229, 290, 399, 687
SmiMI	CAYNNNNRTG	1 cut(s)	192
SmlI	CTYRAG	2 cut(s)	394, 512
SmoI	CTYRAG	2 cut(s)	394, 512
Sse9I	AATT	5 cut(s)	13, 21, 90, 149, 640
SsiI	CCGC	1 cut(s)	391
SspMI	CTAG	5 cut(s)	279, 378, 609, 684, 711
StyD4I	CCNGG	1 cut(s)	550
StyI	CCWWGG	1 cut(s)	710
TaaI	ACNGT	1 cut(s)	57
TaiI	ACGT	1 cut(s)	337
TaqII	GACCGA	1 cut(s)	336
TasI	AATT	5 cut(s)	13, 21, 90, 149, 640
TatI	WGTACW	1 cut(s)	145
TfiI	GAWTC	2 cut(s)	158, 503
Tru1I	TTAA	1 cut(s)	113
Tru9I	TTAA	1 cut(s)	113
TseFI	GTSAC	4 cut(s)	82, 348, 458, 479
TseI	GCWGC	3 cut(s)	170, 236, 717
Tsp45I	GTSAC	4 cut(s)	82, 348, 458, 479
TspDTI	ATGAA	5 cut(s)	47, 90, 180, 206, 546
TspGWI	ACGGA	1 cut(s)	345
VpaK11BI	GGWCC	4 cut(s)	229, 290, 399, 687
XapI	RAATTY	1 cut(s)	90
XbaI	TCTAGA	1 cut(s)	377
XcmI	CCANNNNNNNNNTGG	1 cut(s)	639
XmaJI	CCTAGG	1 cut(s)	710
XspI	CTAG	5 cut(s)	279, 378, 609, 684, 711

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.