Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0033554.1

Orthogroup ID

OG0008030

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 856

Gene Structure 856 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0033554.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 350 bp

atgcgccaaagaactagggtcagagggccatcatcaggctatggggacagaagatcatctcattatggacgttctcgttctcgttcacgctctccacactatccatcaggttcaagaagtcggtaccgctcaaggtcctattctcctgctccaagacgacgaggtgattctgtttcgccagttagaaggcgtggtgaccacccaaggtcacctcgtgaccatccacgttcaccacttgaccacccaaggtcatcaagggattctccccttgagagaggcggtgatcatgatcgaaggccatattctccaggttatgacaatggtgctgggcaagctgaaaatggagaagg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000244 GO:0000245 GO:0000375 GO:0000377 GO:0000381 GO:0000387 GO:0000395 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006376 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0008380 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010629 GO:0016043 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0019219 GO:0019222 GO:0019904 GO:0022607 GO:0022613 GO:0022618 GO:0031323 GO:0031324 GO:0031974 GO:0031981 GO:0033119 GO:0034622 GO:0034641 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043484 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045292 GO:0045934 GO:0046483 GO:0048024 GO:0048025 GO:0048519 GO:0048523 GO:0050684 GO:0050686 GO:0050733 GO:0050789 GO:0050794 GO:0050896 GO:0051082 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065003 GO:0065007 GO:0070013 GO:0071704 GO:0071826 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1903311 GO:1903312

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

117

Amino Acids

13.31

Weight (kDa)

11.61

Isoelectric Point (pI)

132.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008030)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55460
fragaria_vesca	FvH4_7g22601 FvH4_7g22602
malus_domestica	MD01G1135000.v1.1 MD07G1199700.v1.1
prunus_persica	Prupe.2G236400_v2.0.a1 Prupe.2G236400_v2.0.a1 Prupe.2G236400_v2.0.a1 Prupe.2G236400_v2.0.a1
pyrus_communis	pycom01g15570 pycom07g18650
rosa_chinensis	RchiOBHm_Chr1g0367721
rosa_laevigata	RLG00000027268
rosa_multiflora	Rmu_co8328167.1_g000001 Rmu_sc0008470.1_g000003 Rmu_sc0033554.1_g000001
rosa_roxburghii	Rroxscaffold_4G00289280
rosa_rugosa	Rorug01G0336200
rosa_samantha	Rh1AG343300 Rh1BG305000 Rh1CG320700 Rh1DG337300 Rh6BG013900
rosa_wichuraiana	Rw1G030550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	123
AccB1I	GGYRCC	1 cut(s)	123
AccBSI	CCGCTC	1 cut(s)	129
AciI	CCGC	2 cut(s)	127, 279
AdeI	CACNNNGTG	1 cut(s)	215
AfaI	GTAC	1 cut(s)	125
AfiI	CCNNNNNNNGG	1 cut(s)	35
AgsI	TTSAA	1 cut(s)	114
AjnI	CCWGG	1 cut(s)	307
AluBI	AGCT	1 cut(s)	335
AluI	AGCT	1 cut(s)	335
AoxI	GGCC	2 cut(s)	26, 296
Asp718I	GGTACC	1 cut(s)	123
AspLEI	GCGC	1 cut(s)	6
AspS9I	GGNCC	2 cut(s)	26, 135
AsuHPI	GGTGA	5 cut(s)	176, 201, 206, 222, 293
AvaII	GGWCC	1 cut(s)	135
BanI	GGYRCC	1 cut(s)	123
BauI	CACGAG	1 cut(s)	213
BccI	CCATC	3 cut(s)	37, 112, 228
BciT130I	CCWGG	1 cut(s)	309
BclI	TGATCA	1 cut(s)	283
BfaI	CTAG	1 cut(s)	15
Bme1390I	CCNGG	1 cut(s)	309
Bme18I	GGWCC	1 cut(s)	135
BmgT120I	GGNCC	2 cut(s)	26, 135
BmiI	GGNNCC	1 cut(s)	125
BmrFI	CCNGG	1 cut(s)	309
BpmI	CTGGAG	1 cut(s)	291
BpuEI	CTTGAG	2 cut(s)	115, 290
BsaBI	GATNNNNATC	1 cut(s)	288
BsaJI	CCNNGG	2 cut(s)	203, 245
Bsc4I	CCNNNNNNNGG	1 cut(s)	35
Bse1I	ACTGG	1 cut(s)	179
Bse8I	GATNNNNATC	1 cut(s)	288
BseBI	CCWGG	1 cut(s)	309
BseDI	CCNNGG	2 cut(s)	203, 245
BseGI	GGATG	1 cut(s)	220
BseJI	GATNNNNATC	1 cut(s)	288
BseLI	CCNNNNNNNGG	1 cut(s)	35
BseNI	ACTGG	1 cut(s)	179
BseYI	CCCAGC	1 cut(s)	326
BshFI	GGCC	2 cut(s)	28, 298
BshNI	GGYRCC	1 cut(s)	123
BslFI	GGGAC	1 cut(s)	59
BslI	CCNNNNNNNGG	1 cut(s)	35
BsmFI	GGGAC	1 cut(s)	59
BsnI	GGCC	2 cut(s)	28, 298
Bsp143I	GATC	3 cut(s)	53, 283, 289
BspACI	CCGC	2 cut(s)	127, 279
BspANI	GGCC	2 cut(s)	28, 298
BspHI	TCATGA	1 cut(s)	286
BspLI	GGNNCC	1 cut(s)	125
BspT107I	GGYRCC	1 cut(s)	123
BsrBI	CCGCTC	1 cut(s)	129
BsrI	ACTGG	1 cut(s)	179
BssECI	CCNNGG	2 cut(s)	203, 245
BssMI	GATC	3 cut(s)	53, 283, 289
BssSI	CACGAG	1 cut(s)	213
BssT1I	CCWWGG	2 cut(s)	203, 245
Bst2BI	CACGAG	1 cut(s)	213
Bst2UI	CCWGG	1 cut(s)	309
BstC8I	GCNNGC	1 cut(s)	333
BstEII	GGTNACC	2 cut(s)	194, 207
BstF5I	GGATG	1 cut(s)	220
BstHHI	GCGC	1 cut(s)	6
BstKTI	GATC	3 cut(s)	56, 286, 292
BstMBI	GATC	3 cut(s)	53, 283, 289
BstMWI	GCNNNNNNNGC	1 cut(s)	332
BstNI	CCWGG	1 cut(s)	309
BstPI	GGTNACC	2 cut(s)	194, 207
BstSCI	CCNGG	1 cut(s)	307
BsuRI	GGCC	2 cut(s)	28, 298
BtsCI	GGATG	1 cut(s)	220
Cac8I	GCNNGC	1 cut(s)	333
CciI	TCATGA	1 cut(s)	286
CfoI	GCGC	1 cut(s)	6
Cfr13I	GGNCC	2 cut(s)	26, 135
Csp6I	GTAC	1 cut(s)	124
CviAII	CATG	1 cut(s)	287
CviJI	RGCY	4 cut(s)	28, 39, 298, 335
CviKI_1	RGCY	4 cut(s)	28, 39, 298, 335
CviQI	GTAC	1 cut(s)	124
DpnI	GATC	3 cut(s)	55, 285, 291
DpnII	GATC	3 cut(s)	53, 283, 289
DraIII	CACNNNGTG	1 cut(s)	215
Eco130I	CCWWGG	2 cut(s)	203, 245
Eco47I	GGWCC	1 cut(s)	135
Eco91I	GGTNACC	2 cut(s)	194, 207
EcoO109I	RGGNCCY	1 cut(s)	135
EcoO65I	GGTNACC	2 cut(s)	194, 207
EcoRII	CCWGG	1 cut(s)	307
EcoT14I	CCWWGG	2 cut(s)	203, 245
ErhI	CCWWGG	2 cut(s)	203, 245
FaeI	CATG	1 cut(s)	290
FaiI	YATR	5 cut(s)	42, 66, 288, 301, 315
FaqI	GGGAC	1 cut(s)	59
FatI	CATG	1 cut(s)	286
FbaI	TGATCA	1 cut(s)	283
FokI	GGATG	1 cut(s)	207
FspBI	CTAG	1 cut(s)	15
GlaI	GCGC	1 cut(s)	5
GsaI	CCCAGC	1 cut(s)	330
GsuI	CTGGAG	1 cut(s)	291
HaeIII	GGCC	2 cut(s)	28, 298
HhaI	GCGC	1 cut(s)	6
Hin1II	CATG	1 cut(s)	290
Hin6I	GCGC	1 cut(s)	4
HinP1I	GCGC	1 cut(s)	4
HinfI	GANTC	2 cut(s)	167, 260
HphI	GGTGA	5 cut(s)	176, 201, 206, 222, 293
Hpy166II	GTNNAC	2 cut(s)	86, 230
Hpy188I	TCNGA	1 cut(s)	23
Hpy188III	TCNNGA	3 cut(s)	114, 215, 287
Hpy8I	GTNNAC	2 cut(s)	86, 230
Hpy99I	CGWCG	1 cut(s)	162
HpyAV	CCTTC	3 cut(s)	180, 288, 341
HpyCH4IV	ACGT	2 cut(s)	70, 226
HpyF10VI	GCNNNNNNNGC	1 cut(s)	332
HpySE526I	ACGT	2 cut(s)	70, 226
Hsp92II	CATG	1 cut(s)	290
HspAI	GCGC	1 cut(s)	4
KpnI	GGTACC	1 cut(s)	127
Ksp22I	TGATCA	1 cut(s)	283
Kzo9I	GATC	3 cut(s)	53, 283, 289
LmnI	GCTCC	1 cut(s)	154
LpnPI	CCDG	7 cut(s)	21, 93, 159, 192, 294, 312, 321
MaeI	CTAG	1 cut(s)	15
MaeII	ACGT	2 cut(s)	70, 226
MaeIII	GTNAC	3 cut(s)	194, 207, 215
MalI	GATC	3 cut(s)	55, 285, 291
MbiI	CCGCTC	1 cut(s)	129
MboI	GATC	3 cut(s)	53, 283, 289
MboII	GAAGA	1 cut(s)	63
MnlI	CCTC	4 cut(s)	17, 155, 222, 269
MspR9I	CCNGG	1 cut(s)	309
MvaI	CCWGG	1 cut(s)	309
MwoI	GCNNNNNNNGC	1 cut(s)	332
NdeII	GATC	3 cut(s)	53, 283, 289
NlaIII	CATG	1 cut(s)	290
NlaIV	GGNNCC	1 cut(s)	125
NmuCI	GTSAC	3 cut(s)	194, 207, 215
PagI	TCATGA	1 cut(s)	286
PfeI	GAWTC	2 cut(s)	167, 260
PpuMI	RGGWCCY	1 cut(s)	135
Psp5II	RGGWCCY	1 cut(s)	135
Psp6I	CCWGG	1 cut(s)	307
PspEI	GGTNACC	2 cut(s)	194, 207
PspFI	CCCAGC	1 cut(s)	326
PspGI	CCWGG	1 cut(s)	307
PspN4I	GGNNCC	1 cut(s)	125
PspPI	GGNCC	2 cut(s)	26, 135
PspPPI	RGGWCCY	1 cut(s)	135
RsaI	GTAC	1 cut(s)	125
RsaNI	GTAC	1 cut(s)	124
Sau3AI	GATC	3 cut(s)	53, 283, 289
Sau96I	GGNCC	2 cut(s)	26, 135
ScrFI	CCNGG	1 cut(s)	309
SinI	GGWCC	1 cut(s)	135
SmlI	CTYRAG	2 cut(s)	130, 269
SmoI	CTYRAG	2 cut(s)	130, 269
SsiI	CCGC	2 cut(s)	127, 279
SspMI	CTAG	1 cut(s)	15
StyD4I	CCNGG	1 cut(s)	307
StyI	CCWWGG	2 cut(s)	203, 245
TaiI	ACGT	2 cut(s)	73, 229
TaqI	TCGA	1 cut(s)	292
TfiI	GAWTC	2 cut(s)	167, 260
TseFI	GTSAC	3 cut(s)	194, 207, 215
Tsp45I	GTSAC	3 cut(s)	194, 207, 215
VpaK11BI	GGWCC	1 cut(s)	135
XspI	CTAG	1 cut(s)	15

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.