MD07G1199700.v1.1

splicing factor

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
Physical Location & Seq
Forward (+)
27799578 .. 27802705
3128 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1199700.v1.1.491

Sequence Viewer

Length: 948 bp
ATGGAGTGTCCGAACCGAAGAGTCGAAGCTGCGAGCCGGCTCTTAAAATCAGGGTTGCGATTCGATTGTTTGAAACAGTCTCTCTCTTCAGAAATTTCAGATCCAAAAAGTACAATTTCTTCGAAGCTCGCCCGTTTGTTGGATATGAGGAGGTACAGCCCACAGTACTATAGTCCTCCGAGGAGGAGCTACGGCGGCGGTGGAGGAGGAGGAGGTGGGCGAGGAAGGAGCCCCCCAAGAAGGCGCAAGGAGCAGAACAATGGAAGTCTTTTGGTCCGGAACATTCCTCTGGATTGCAGAGCTGAAGAGCTGAGAGCTCCCTTTGAAAGATATGGGGAAGTTCGGGATGTCTACATTCCCAAGGACTACTACACTGGGGAACCTCGGGGATTTGCATTTATTCAGTTTGTGGATTCTTATGAGGCCGCCGAGGCTCAGTATCATATGAATGGGAAGATTTTTGCTGGGAGGGAGATATCTGTGGTTGTTGCAGCAGAGACAAGGAAAAGGCCGGAGGAGATGCGGCAAAGGACTAGGGTTAGAGAGCCATCAGATCATGGGGGAAGACGATCATCTTATTATGGACGTTCACATTCTCGTTCACGCTCACCACGCTATCCATCAGGTTCTAGAAGTCGGTACCGCTCAAGGTCCTATTCTCCTGTTCCAAGACGCCGAGGCGACTCTATTTCACCAAGCAGAAGGCGCCGAGACAACCCAAGATCACCCCGAGATCTTCCACCAGTGCGAGATGGTGATCGCAGACCCTATTCTCCAGGTTATGACAATGTTGCTGGACCAAATGACAACGGTGATGAGTATGACAAGAAACCTATGCGCGAAGAAAAGGACGGAAGAGATCACTGGAGGTCTCCTGATAGAGCATCAAGATCGCCATCGGGATCTAGGTCCAGATCTGCTGAGTTATCACCTGCGCGCAGCAGATGA

Protein Analysis

316

Amino Acids

36.07

Weight (kDa)

10.58

Isoelectric Point (pI)

98.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 90 - 159 3.6e-18 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 940
Acc36I ACCTGC 1 cut(s) 940
Acc65I GGTACC 1 cut(s) 639
AccB1I GGYRCC 2 cut(s) 639, 705
AccBSI CCGCTC 1 cut(s) 645
AccI GTMKAC 1 cut(s) 351
AccII CGCG 2 cut(s) 840, 937
AccIII TCCGGA 1 cut(s) 276
AciI CCGC 5 cut(s) 195, 198, 426, 523, 643
AclWI GGATC 2 cut(s) 95, 910
AcsI RAATTY 1 cut(s) 93
AcuI CTGAAG 2 cut(s) 72, 324
AcyI GRCGYC 2 cut(s) 673, 706
AfaI GTAC 4 cut(s) 112, 155, 167, 641
AfiI CCNNNNNNNGG 2 cut(s) 139, 240
AgsI TTSAA 2 cut(s) 73, 326
AjnI CCWGG 1 cut(s) 775
AluBI AGCT 6 cut(s) 29, 127, 189, 302, 310, 317
AluI AGCT 6 cut(s) 29, 127, 189, 302, 310, 317
Alw21I GWGCWC 1 cut(s) 319
Alw26I GTCTC 4 cut(s) 84, 491, 705, 876
AlwI GGATC 2 cut(s) 95, 910
Ama87I CYCGRG 2 cut(s) 384, 729
Aor13HI TCCGGA 1 cut(s) 276
AoxI GGCC 2 cut(s) 423, 509
ApeKI GCWGC 3 cut(s) 29, 491, 939
ApoI RAATTY 1 cut(s) 93
Asp718I GGTACC 1 cut(s) 639
AspLEI GCGC 5 cut(s) 246, 708, 840, 937, 939
AspS9I GGNCC 4 cut(s) 274, 651, 797, 909
AsuHPI GGTGA 6 cut(s) 600, 684, 717, 767, 824, 921
AsuII TTCGAA 1 cut(s) 122
AvaI CYCGRG 2 cut(s) 384, 729
AvaII GGWCC 4 cut(s) 274, 651, 797, 909
BanI GGYRCC 2 cut(s) 639, 705
BanII GRGCYC 2 cut(s) 233, 319
BarI GAAGNNNNNNTAC 2 cut(s) 103, 135
BbsI GAAGAC 1 cut(s) 571
Bbv12I GWGCWC 1 cut(s) 319
BbvI GCAGC 2 cut(s) 16, 503
BccI CCATC 4 cut(s) 556, 628, 746, 904
BceAI ACGGC 1 cut(s) 208
BcgI CGANNNNNNTGC 2 cut(s) 873, 907
BciT130I CCWGG 1 cut(s) 777
BcoDI GTCTC 4 cut(s) 84, 491, 705, 876
BfaI CTAG 3 cut(s) 534, 630, 906
BfmI CTRYAG 1 cut(s) 169
BfoI RGCGCY 1 cut(s) 709
BfuAI ACCTGC 1 cut(s) 940
BglI GCCNNNNNGGC 1 cut(s) 431
BglII AGATCT 2 cut(s) 733, 914
BisI GCNGC 6 cut(s) 30, 196, 426, 492, 524, 940
BlsI GCNGC 6 cut(s) 31, 197, 427, 493, 525, 941
BmcAI AGTACT 1 cut(s) 167
Bme1390I CCNGG 1 cut(s) 777
Bme18I GGWCC 4 cut(s) 274, 651, 797, 909
BmeT110I CYCGRG 2 cut(s) 384, 729
BmgT120I GGNCC 4 cut(s) 274, 651, 797, 909
BmiI GGNNCC 4 cut(s) 230, 381, 641, 707
BmrFI CCNGG 1 cut(s) 777
BmrI ACTGGG 1 cut(s) 384
BmsI GCATC 2 cut(s) 510, 893
BmuI ACTGGG 1 cut(s) 384
BpiI GAAGAC 1 cut(s) 571
BpmI CTGGAG 2 cut(s) 759, 886
Bpu14I TTCGAA 1 cut(s) 122
BpuEI CTTGAG 1 cut(s) 631
BsaBI GATNNNNATC 2 cut(s) 756, 895
BsaHI GRCGYC 2 cut(s) 673, 706
BsaI GGTCTC 1 cut(s) 876
BsaJI CCNNGG 5 cut(s) 179, 360, 383, 429, 676
BsaWI WCCGGW 1 cut(s) 276
Bsc4I CCNNNNNNNGG 2 cut(s) 139, 240
Bse118I RCCGGY 1 cut(s) 36
Bse1I ACTGG 3 cut(s) 379, 743, 869
Bse8I GATNNNNATC 2 cut(s) 756, 895
BseAI TCCGGA 1 cut(s) 276
BseBI CCWGG 1 cut(s) 777
BseDI CCNNGG 5 cut(s) 179, 360, 383, 429, 676
BseGI GGATG 1 cut(s) 352
BseJI GATNNNNATC 2 cut(s) 756, 895
BseLI CCNNNNNNNGG 2 cut(s) 139, 240
BseMII CTCAG 3 cut(s) 302, 449, 912
BseNI ACTGG 3 cut(s) 379, 743, 869
BsePI GCGCGC 1 cut(s) 935
BseRI GAGGAG 7 cut(s) 163, 196, 199, 219, 222, 225, 530
BseXI GCAGC 2 cut(s) 16, 503
BseYI CCCAGC 1 cut(s) 464
Bsh1236I CGCG 2 cut(s) 840, 937
BshFI GGCC 2 cut(s) 425, 511
BshNI GGYRCC 2 cut(s) 639, 705
BsiHKAI GWGCWC 1 cut(s) 319
BsiHKCI CYCGRG 2 cut(s) 384, 729
BsiSI CCGG 3 cut(s) 37, 277, 512
BslI CCNNNNNNNGG 2 cut(s) 139, 240
BsmAI GTCTC 4 cut(s) 84, 491, 705, 876
BsnI GGCC 2 cut(s) 425, 511
Bso31I GGTCTC 1 cut(s) 876
BsoBI CYCGRG 2 cut(s) 384, 729
Bsp119I TTCGAA 1 cut(s) 122
Bsp1286I GDGCHC 2 cut(s) 233, 319
Bsp13I TCCGGA 1 cut(s) 276
BspACI CCGC 5 cut(s) 195, 198, 426, 523, 643
BspANI GGCC 2 cut(s) 425, 511
BspCNI CTCAG 3 cut(s) 303, 448, 913
BspEI TCCGGA 1 cut(s) 276
BspFNI CGCG 2 cut(s) 840, 937
BspLI GGNNCC 4 cut(s) 230, 381, 641, 707
BspMI ACCTGC 1 cut(s) 940
BspPI GGATC 2 cut(s) 95, 910
BspQI GCTCTTC 1 cut(s) 300
BspT104I TTCGAA 1 cut(s) 122
BspT107I GGYRCC 2 cut(s) 639, 705
BspTNI GGTCTC 1 cut(s) 876
BsrBI CCGCTC 1 cut(s) 645
BsrFI RCCGGY 1 cut(s) 36
BsrI ACTGG 3 cut(s) 379, 743, 869
BssAI RCCGGY 1 cut(s) 36
BssECI CCNNGG 5 cut(s) 179, 360, 383, 429, 676
BssHII GCGCGC 1 cut(s) 935
BssNI GRCGYC 2 cut(s) 673, 706
BssT1I CCWWGG 1 cut(s) 360
Bst2UI CCWGG 1 cut(s) 777
Bst4CI ACNGT 3 cut(s) 78, 165, 812
Bst6I CTCTTC 4 cut(s) 13, 91, 300, 850
BstACI GRCGYC 2 cut(s) 673, 706
BstBI TTCGAA 1 cut(s) 122
BstC8I GCNNGC 4 cut(s) 34, 38, 129, 937
BstDEI CTNAG 3 cut(s) 311, 435, 921
BstF5I GGATG 1 cut(s) 352
BstFNI CGCG 2 cut(s) 840, 937
BstH2I RGCGCY 1 cut(s) 709
BstHHI GCGC 5 cut(s) 246, 708, 840, 937, 939
BstMAI GTCTC 4 cut(s) 84, 491, 705, 876
BstMWI GCNNNNNNNGC 5 cut(s) 195, 250, 431, 612, 705
BstNI CCWGG 1 cut(s) 777
BstSCI CCNGG 1 cut(s) 775
BstSFI CTRYAG 1 cut(s) 169
BstUI CGCG 2 cut(s) 840, 937
BstV1I GCAGC 2 cut(s) 16, 503
BstV2I GAAGAC 1 cut(s) 571
BstX2I RGATCY 4 cut(s) 100, 733, 902, 914
BstYI RGATCY 4 cut(s) 100, 733, 902, 914
BsuRI GGCC 2 cut(s) 425, 511
BtsCI GGATG 1 cut(s) 352
BtsIMutI CAGTG 3 cut(s) 372, 750, 862
BveI ACCTGC 1 cut(s) 940
Cac8I GCNNGC 4 cut(s) 34, 38, 129, 937
CfoI GCGC 5 cut(s) 246, 708, 840, 937, 939
Cfr10I RCCGGY 1 cut(s) 36
Cfr13I GGNCC 4 cut(s) 274, 651, 797, 909
CseI GACGC 1 cut(s) 681
Csp6I GTAC 4 cut(s) 111, 154, 166, 640
CviAII CATG 1 cut(s) 557
CviQI GTAC 4 cut(s) 111, 154, 166, 640
DdeI CTNAG 3 cut(s) 311, 435, 921
DinI GGCGCC 1 cut(s) 707
Eam1104I CTCTTC 4 cut(s) 13, 91, 300, 850
EarI CTCTTC 4 cut(s) 13, 91, 300, 850
Ecl136II GAGCTC 1 cut(s) 317
Eco130I CCWWGG 1 cut(s) 360
Eco24I GRGCYC 2 cut(s) 233, 319
Eco31I GGTCTC 1 cut(s) 876
Eco32I GATATC 1 cut(s) 477
Eco47I GGWCC 4 cut(s) 274, 651, 797, 909
Eco53kI GAGCTC 1 cut(s) 317
Eco57I CTGAAG 2 cut(s) 72, 324
Eco88I CYCGRG 2 cut(s) 384, 729
EcoICRI GAGCTC 1 cut(s) 317
EcoO109I RGGNCCY 1 cut(s) 651
EcoRII CCWGG 1 cut(s) 775
EcoRV GATATC 1 cut(s) 477
EcoT14I CCWWGG 1 cut(s) 360
EcoT38I GRGCYC 2 cut(s) 233, 319
EgeI GGCGCC 1 cut(s) 707
EheI GGCGCC 1 cut(s) 707
ErhI CCWWGG 1 cut(s) 360
FaeI CATG 1 cut(s) 560
FatI CATG 1 cut(s) 556
FauNDI CATATG 1 cut(s) 444
FblI GTMKAC 1 cut(s) 351
Fnu4HI GCNGC 6 cut(s) 30, 196, 426, 492, 524, 940
FokI GGATG 1 cut(s) 359
FriOI GRGCYC 2 cut(s) 233, 319
Fsp4HI GCNGC 6 cut(s) 30, 196, 426, 492, 524, 940
FspBI CTAG 3 cut(s) 534, 630, 906
GlaI GCGC 5 cut(s) 245, 707, 839, 936, 938
GluI GCNGC 6 cut(s) 30, 196, 426, 492, 524, 940
GsaI CCCAGC 1 cut(s) 468
GsuI CTGGAG 2 cut(s) 759, 886
HaeII RGCGCY 1 cut(s) 709
HaeIII GGCC 2 cut(s) 425, 511
HapII CCGG 3 cut(s) 37, 277, 512
HgaI GACGC 1 cut(s) 681
HhaI GCGC 5 cut(s) 246, 708, 840, 937, 939
Hin1I GRCGYC 2 cut(s) 673, 706
Hin1II CATG 1 cut(s) 560
Hin6I GCGC 5 cut(s) 244, 706, 838, 935, 937
HinP1I GCGC 5 cut(s) 244, 706, 838, 935, 937
HinfI GANTC 4 cut(s) 21, 60, 413, 683
HpaII CCGG 3 cut(s) 37, 277, 512
HphI GGTGA 6 cut(s) 600, 684, 717, 767, 824, 921
Hpy166II GTNNAC 3 cut(s) 352, 590, 602
Hpy188I TCNGA 5 cut(s) 12, 91, 100, 180, 553
Hpy188III TCNNGA 8 cut(s) 277, 290, 344, 630, 875, 888, 900, 912
Hpy8I GTNNAC 3 cut(s) 352, 590, 602
HpyAV CCTTC 3 cut(s) 219, 234, 696
HpyCH4III ACNGT 3 cut(s) 78, 165, 812
HpyCH4IV ACGT 1 cut(s) 586
HpyCH4V TGCA 3 cut(s) 297, 395, 491
HpyF10VI GCNNNNNNNGC 5 cut(s) 195, 250, 431, 612, 705
HpyF3I CTNAG 3 cut(s) 311, 435, 921
HpySE526I ACGT 1 cut(s) 586
Hsp92I GRCGYC 2 cut(s) 673, 706
Hsp92II CATG 1 cut(s) 560
HspAI GCGC 5 cut(s) 244, 706, 838, 935, 937
KasI GGCGCC 1 cut(s) 705
Kpn2I TCCGGA 1 cut(s) 276
KpnI GGTACC 1 cut(s) 643
KroI GCCGGC 1 cut(s) 36
KroNI GCCGGC 1 cut(s) 38
LguI GCTCTTC 1 cut(s) 300
LmnI GCTCC 4 cut(s) 186, 228, 250, 322
Lsp1109I GCAGC 2 cut(s) 16, 503
LweI GCATC 2 cut(s) 510, 893
MaeI CTAG 3 cut(s) 534, 630, 906
MaeII ACGT 1 cut(s) 586
MbiI CCGCTC 1 cut(s) 645
MboII GAAGA 9 cut(s) 30, 78, 111, 317, 466, 576, 728, 854, 867
MflI RGATCY 4 cut(s) 100, 733, 902, 914
MhlI GDGCHC 2 cut(s) 233, 319
MluCI AATT 2 cut(s) 93, 114
Mly113I GGCGCC 1 cut(s) 706
MlyI GAGTC 2 cut(s) 30, 677
MmeI TCCRAC 1 cut(s) 120
MroI TCCGGA 1 cut(s) 276
MroNI GCCGGC 1 cut(s) 36
MseI TTAA 1 cut(s) 44
MslI CAYNNNNRTG 1 cut(s) 447
MspI CCGG 3 cut(s) 37, 277, 512
MspR9I CCNGG 1 cut(s) 777
MvaI CCWGG 1 cut(s) 777
MvnI CGCG 2 cut(s) 840, 937
MwoI GCNNNNNNNGC 5 cut(s) 195, 250, 431, 612, 705
NaeI GCCGGC 1 cut(s) 38
NarI GGCGCC 1 cut(s) 706
NdeI CATATG 1 cut(s) 444
NgoMIV GCCGGC 1 cut(s) 36
NlaIII CATG 1 cut(s) 560
NlaIV GGNNCC 4 cut(s) 230, 381, 641, 707
NmeAIII GCCGAG 3 cut(s) 454, 701, 734
NspV TTCGAA 1 cut(s) 122
PaqCI CACCTGC 1 cut(s) 940
PauI GCGCGC 1 cut(s) 935
PciSI GCTCTTC 1 cut(s) 300
PdiI GCCGGC 1 cut(s) 38
PfeI GAWTC 2 cut(s) 60, 413
PkrI GCNGC 6 cut(s) 31, 197, 427, 493, 525, 941
PleI GAGTC 2 cut(s) 29, 677
PluTI GGCGCC 1 cut(s) 709
PpsI GAGTC 2 cut(s) 29, 677
PpuMI RGGWCCY 1 cut(s) 651
Psp124BI GAGCTC 1 cut(s) 319
Psp5II RGGWCCY 1 cut(s) 651
Psp6I CCWGG 1 cut(s) 775
PspFI CCCAGC 1 cut(s) 464
PspGI CCWGG 1 cut(s) 775
PspN4I GGNNCC 4 cut(s) 230, 381, 641, 707
PspPI GGNCC 4 cut(s) 274, 651, 797, 909
PspPPI RGGWCCY 1 cut(s) 651
PsuI RGATCY 4 cut(s) 100, 733, 902, 914
PteI GCGCGC 1 cut(s) 935
RsaI GTAC 4 cut(s) 112, 155, 167, 641
RsaNI GTAC 4 cut(s) 111, 154, 166, 640
RseI CAYNNNNRTG 1 cut(s) 447
SacI GAGCTC 1 cut(s) 319
SapI GCTCTTC 1 cut(s) 300
SaqAI TTAA 1 cut(s) 44
SatI GCNGC 6 cut(s) 30, 196, 426, 492, 524, 940
Sau96I GGNCC 4 cut(s) 274, 651, 797, 909
ScaI AGTACT 1 cut(s) 167
SchI GAGTC 2 cut(s) 30, 677
ScrFI CCNGG 1 cut(s) 777
SduI GDGCHC 2 cut(s) 233, 319
SfaNI GCATC 2 cut(s) 510, 893
SfcI CTRYAG 1 cut(s) 169
SfoI GGCGCC 1 cut(s) 707
SfuI TTCGAA 1 cut(s) 122
SinI GGWCC 4 cut(s) 274, 651, 797, 909
SmiMI CAYNNNNRTG 1 cut(s) 447
SmlI CTYRAG 1 cut(s) 646
SmoI CTYRAG 1 cut(s) 646
Sse9I AATT 2 cut(s) 93, 114
SsiI CCGC 5 cut(s) 195, 198, 426, 523, 643
SspDI GGCGCC 1 cut(s) 705
SspMI CTAG 3 cut(s) 534, 630, 906
SstI GAGCTC 1 cut(s) 319
StyD4I CCNGG 1 cut(s) 775
StyI CCWWGG 1 cut(s) 360
TaaI ACNGT 3 cut(s) 78, 165, 812
TaiI ACGT 1 cut(s) 589
TaqI TCGA 3 cut(s) 24, 63, 122
TasI AATT 2 cut(s) 93, 114
TatI WGTACW 2 cut(s) 110, 165
TauI GCSGC 3 cut(s) 198, 428, 526
TfiI GAWTC 2 cut(s) 60, 413
Tru1I TTAA 1 cut(s) 44
Tru9I TTAA 1 cut(s) 44
TscAI CASTG 3 cut(s) 379, 750, 869
TseI GCWGC 3 cut(s) 29, 491, 939
TspDTI ATGAA 1 cut(s) 461
TspGWI ACGGA 1 cut(s) 867
TspRI CASTG 3 cut(s) 379, 750, 869
VpaK11BI GGWCC 4 cut(s) 274, 651, 797, 909
XapI RAATTY 1 cut(s) 93
XbaI TCTAGA 1 cut(s) 629
XmiI GTMKAC 1 cut(s) 351
XspI CTAG 3 cut(s) 534, 630, 906
ZrmI AGTACT 1 cut(s) 167
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.