Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0008030

Physical Location & Seq

Genomic Coordinates Forward (+)

57930695 .. 57933841

Gene Structure 3147 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG343300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

ATGGAACATGGTTCGCAATCCGCGGAATCAAGTGTGAATATGAGGAGGTACAGCCCAGAGTACTACAGTCCTCCGAGGAGAGGCTACGGCGGCGGCGGTGGTGGCCGGGGAAGAAGCCCGCCGAGGAAGCGCAGGGAGCAGAATAACGGAAGCCTTTTGGTCCGGAACATTCCTCTGGATTGCAGGCCGGAAGAGCTGAGGGTTCCCTTTGAGAGATTTGGGCTTGTTCGGGATGTCTACATCCCCAAGGATTACTATACTGGGGAACCTCGGGGATTTGCATTTGTGCAATTTGTGGATTCTTATGAAGCTGCAGAGGCTCAGTATCATATGAATGGGAAAATTTTTGCTGGGAGGGAGATATCTGTGGTTCTCGCTGCAGAGACAAGGAAAAGACCAGAGGAGATGCGCCAAAGAACTAGGGTCAGAGGGCCATCATCAGGCTATGGGGACAGAAGATCATCTCATTATGGACGTTCTCGTTCTCGTTCACGCTCTCCACACTATCCATCAGGTTCAAGAAGTCGGTACCGCTCAAGGTCATATTCTCCTGCTCCAAGACGACGAGGTGATTCTGTTTCGCCAGTTAGAAGGCGTGGTGACCACCCAAGGTCACCTCGTGACCATCCACGTTCACCACTTGACCACCCAAGGTCATCAAGGGATTCCCCCCTTGAGAGAGGTGGTGATCATGATCGAAGGCCATATTCTCCAGGTTATGACAATGGTGCTGGGCAAGCTGAAAATGGAGAAGGGTATGACAAGAAATCGAGGTATGATGAGGAGATTGAACCACGAGGCAATTGGAGATCTCCTGATAAAGCATCAAGATCACCATCTGGTTCTAGGTCCAGATCTGCTGAGTTATCACCTAGGCGCAGCAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000244 GO:0000245 GO:0000375 GO:0000377 GO:0000381 GO:0000387 GO:0000395 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006376 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0008380 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010629 GO:0016043 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0019219 GO:0019222 GO:0019904 GO:0022607 GO:0022613 GO:0022618 GO:0031323 GO:0031324 GO:0031974 GO:0031981 GO:0033119 GO:0034622 GO:0034641 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043484 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045292 GO:0045934 GO:0046483 GO:0048024 GO:0048025 GO:0048519 GO:0048523 GO:0050684 GO:0050686 GO:0050733 GO:0050789 GO:0050794 GO:0050896 GO:0051082 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065003 GO:0065007 GO:0070013 GO:0071704 GO:0071826 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1903311 GO:1903312

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

295

Amino Acids

33.71

Weight (kDa)

10.67

Isoelectric Point (pI)

105.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	52 - 121	8e-18	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008030)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55460
fragaria_vesca	FvH4_7g22601 FvH4_7g22602
malus_domestica	MD01G1135000.v1.1 MD07G1199700.v1.1
prunus_persica	Prupe.2G236400_v2.0.a1 Prupe.2G236400_v2.0.a1 Prupe.2G236400_v2.0.a1 Prupe.2G236400_v2.0.a1
pyrus_communis	pycom01g15570 pycom07g18650
rosa_chinensis	RchiOBHm_Chr1g0367721
rosa_laevigata	RLG00000027268
rosa_multiflora	Rmu_co8328167.1_g000001 Rmu_sc0008470.1_g000003 Rmu_sc0033554.1_g000001
rosa_roxburghii	Rroxscaffold_4G00289280
rosa_rugosa	Rorug01G0336200
rosa_samantha	Rh1AG343300 Rh1BG305000 Rh1CG320700 Rh1DG337300 Rh6BG013900
rosa_wichuraiana	Rw1G030550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	528
AccB1I	GGYRCC	1 cut(s)	528
AccBSI	CCGCTC	1 cut(s)	534
AccI	GTMKAC	1 cut(s)	237
AccII	CGCG	1 cut(s)	23
AccIII	TCCGGA	1 cut(s)	162
AciI	CCGC	7 cut(s)	21, 23, 90, 93, 96, 119, 532
AcoI	YGGCCR	1 cut(s)	103
AcsI	RAATTY	1 cut(s)	342
AdeI	CACNNNGTG	1 cut(s)	620
AfaI	GTAC	3 cut(s)	50, 62, 530
AfiI	CCNNNNNNNGG	2 cut(s)	80, 440
AgsI	TTSAA	2 cut(s)	519, 791
AjnI	CCWGG	1 cut(s)	712
AluBI	AGCT	3 cut(s)	196, 311, 740
AluI	AGCT	3 cut(s)	196, 311, 740
Alw26I	GTCTC	1 cut(s)	377
Ama87I	CYCGRG	1 cut(s)	270
Aor13HI	TCCGGA	1 cut(s)	162
AoxI	GGCC	4 cut(s)	103, 185, 431, 701
ApeKI	GCWGC	3 cut(s)	311, 377, 879
ApoI	RAATTY	1 cut(s)	342
Asp718I	GGTACC	1 cut(s)	528
AspA2I	CCTAGG	1 cut(s)	872
AspLEI	GCGC	3 cut(s)	132, 411, 879
AspS9I	GGNCC	3 cut(s)	160, 431, 849
AsuC2I	CCSGG	1 cut(s)	107
AsuHPI	GGTGA	7 cut(s)	581, 606, 611, 627, 698, 825, 861
AvaI	CYCGRG	1 cut(s)	270
AvaII	GGWCC	2 cut(s)	160, 849
AvrII	CCTAGG	1 cut(s)	872
BanI	GGYRCC	1 cut(s)	528
BauI	CACGAG	2 cut(s)	618, 795
BbvCI	CCTCAGC	1 cut(s)	197
BbvI	GCAGC	2 cut(s)	298, 364
BccI	CCATC	4 cut(s)	442, 517, 633, 844
BceAI	ACGGC	1 cut(s)	103
BciT130I	CCWGG	1 cut(s)	714
BclI	TGATCA	1 cut(s)	688
BcnI	CCSGG	1 cut(s)	107
BcoDI	GTCTC	1 cut(s)	377
BfaI	CTAG	3 cut(s)	420, 846, 873
BfmI	CTRYAG	3 cut(s)	64, 312, 378
BglII	AGATCT	2 cut(s)	809, 854
BisI	GCNGC	5 cut(s)	91, 94, 312, 378, 880
BlnI	CCTAGG	1 cut(s)	872
BlsI	GCNGC	5 cut(s)	92, 95, 313, 379, 881
BmcAI	AGTACT	1 cut(s)	62
Bme1390I	CCNGG	2 cut(s)	107, 714
Bme18I	GGWCC	2 cut(s)	160, 849
BmeT110I	CYCGRG	1 cut(s)	270
BmgT120I	GGNCC	3 cut(s)	160, 431, 849
BmiI	GGNNCC	3 cut(s)	204, 267, 530
BmrFI	CCNGG	2 cut(s)	107, 714
BmrI	ACTGGG	1 cut(s)	270
BmsI	GCATC	2 cut(s)	396, 833
BmuI	ACTGGG	1 cut(s)	270
BpmI	CTGGAG	1 cut(s)	696
Bpu10I	CCTNAGC	1 cut(s)	197
BpuEI	CTTGAG	2 cut(s)	520, 695
BpuMI	CCSGG	1 cut(s)	107
BsaBI	GATNNNNATC	2 cut(s)	693, 835
BsaJI	CCNNGG	9 cut(s)	21, 74, 106, 122, 246, 269, 608, 650, 872
BsaWI	WCCGGW	1 cut(s)	162
Bsc4I	CCNNNNNNNGG	2 cut(s)	80, 440
Bse1I	ACTGG	2 cut(s)	265, 584
Bse8I	GATNNNNATC	2 cut(s)	693, 835
BseAI	TCCGGA	1 cut(s)	162
BseBI	CCWGG	1 cut(s)	714
BseDI	CCNNGG	9 cut(s)	21, 74, 106, 122, 246, 269, 608, 650, 872
BseGI	GGATG	3 cut(s)	238, 240, 625
BseJI	GATNNNNATC	2 cut(s)	693, 835
BseLI	CCNNNNNNNGG	2 cut(s)	80, 440
BseMII	CTCAG	3 cut(s)	188, 335, 852
BseNI	ACTGG	2 cut(s)	265, 584
BseRI	GAGGAG	4 cut(s)	58, 91, 416, 797
BseXI	GCAGC	2 cut(s)	298, 364
BseYI	CCCAGC	2 cut(s)	350, 731
Bsh1236I	CGCG	1 cut(s)	23
BshFI	GGCC	4 cut(s)	105, 187, 433, 703
BshNI	GGYRCC	1 cut(s)	528
BsiHKCI	CYCGRG	1 cut(s)	270
BsiSI	CCGG	3 cut(s)	106, 163, 188
BslFI	GGGAC	1 cut(s)	464
BslI	CCNNNNNNNGG	2 cut(s)	80, 440
BsmAI	GTCTC	1 cut(s)	377
BsmFI	GGGAC	1 cut(s)	464
BsnI	GGCC	4 cut(s)	105, 187, 433, 703
BsoBI	CYCGRG	1 cut(s)	270
Bsp13I	TCCGGA	1 cut(s)	162
Bsp143I	GATC	6 cut(s)	458, 688, 694, 809, 830, 854
BspACI	CCGC	7 cut(s)	21, 23, 90, 93, 96, 119, 532
BspANI	GGCC	4 cut(s)	105, 187, 433, 703
BspCNI	CTCAG	3 cut(s)	189, 334, 853
BspEI	TCCGGA	1 cut(s)	162
BspFNI	CGCG	1 cut(s)	23
BspHI	TCATGA	1 cut(s)	691
BspLI	GGNNCC	3 cut(s)	204, 267, 530
BspMAI	CTGCAG	2 cut(s)	316, 382
BspQI	GCTCTTC	1 cut(s)	186
BspT107I	GGYRCC	1 cut(s)	528
BsrBI	CCGCTC	1 cut(s)	534
BsrI	ACTGG	2 cut(s)	265, 584
BssECI	CCNNGG	9 cut(s)	21, 74, 106, 122, 246, 269, 608, 650, 872
BssMI	GATC	6 cut(s)	458, 688, 694, 809, 830, 854
BssSI	CACGAG	2 cut(s)	618, 795
BssT1I	CCWWGG	4 cut(s)	246, 608, 650, 872
Bst2BI	CACGAG	2 cut(s)	618, 795
Bst2UI	CCWGG	1 cut(s)	714
Bst4CI	ACNGT	1 cut(s)	68
Bst6I	CTCTTC	1 cut(s)	186
BstC8I	GCNNGC	3 cut(s)	119, 185, 738
BstDEI	CTNAG	3 cut(s)	197, 321, 861
BstDSI	CCRYGG	1 cut(s)	21
BstEII	GGTNACC	2 cut(s)	599, 612
BstF5I	GGATG	3 cut(s)	238, 240, 625
BstFNI	CGCG	1 cut(s)	23
BstHHI	GCGC	3 cut(s)	132, 411, 879
BstKTI	GATC	6 cut(s)	461, 691, 697, 812, 833, 857
BstMAI	GTCTC	1 cut(s)	377
BstMBI	GATC	6 cut(s)	458, 688, 694, 809, 830, 854
BstMWI	GCNNNNNNNGC	7 cut(s)	90, 102, 127, 136, 193, 317, 737
BstNI	CCWGG	1 cut(s)	714
BstPI	GGTNACC	2 cut(s)	599, 612
BstSCI	CCNGG	2 cut(s)	105, 712
BstSFI	CTRYAG	3 cut(s)	64, 312, 378
BstUI	CGCG	1 cut(s)	23
BstV1I	GCAGC	2 cut(s)	298, 364
BstX2I	RGATCY	2 cut(s)	809, 854
BstYI	RGATCY	2 cut(s)	809, 854
BsuRI	GGCC	4 cut(s)	105, 187, 433, 703
BtgI	CCRYGG	1 cut(s)	21
BtsCI	GGATG	3 cut(s)	238, 240, 625
Cac8I	GCNNGC	3 cut(s)	119, 185, 738
CciI	TCATGA	1 cut(s)	691
CfoI	GCGC	3 cut(s)	132, 411, 879
Cfr13I	GGNCC	3 cut(s)	160, 431, 849
Cfr42I	CCGCGG	1 cut(s)	24
Csp6I	GTAC	3 cut(s)	49, 61, 529
CviAII	CATG	2 cut(s)	8, 692
CviQI	GTAC	3 cut(s)	49, 61, 529
DdeI	CTNAG	3 cut(s)	197, 321, 861
DpnI	GATC	6 cut(s)	460, 690, 696, 811, 832, 856
DpnII	GATC	6 cut(s)	458, 688, 694, 809, 830, 854
DraIII	CACNNNGTG	1 cut(s)	620
EaeI	YGGCCR	1 cut(s)	103
Eam1104I	CTCTTC	1 cut(s)	186
EarI	CTCTTC	1 cut(s)	186
Eco130I	CCWWGG	4 cut(s)	246, 608, 650, 872
Eco32I	GATATC	1 cut(s)	363
Eco47I	GGWCC	2 cut(s)	160, 849
Eco88I	CYCGRG	1 cut(s)	270
Eco91I	GGTNACC	2 cut(s)	599, 612
EcoO65I	GGTNACC	2 cut(s)	599, 612
EcoRII	CCWGG	1 cut(s)	712
EcoRV	GATATC	1 cut(s)	363
EcoT14I	CCWWGG	4 cut(s)	246, 608, 650, 872
ErhI	CCWWGG	4 cut(s)	246, 608, 650, 872
FaeI	CATG	2 cut(s)	11, 695
FaqI	GGGAC	1 cut(s)	464
FatI	CATG	2 cut(s)	7, 691
FauI	CCCGC	1 cut(s)	126
FauNDI	CATATG	1 cut(s)	330
FbaI	TGATCA	1 cut(s)	688
FblI	GTMKAC	1 cut(s)	237
Fnu4HI	GCNGC	5 cut(s)	91, 94, 312, 378, 880
FokI	GGATG	3 cut(s)	227, 245, 612
Fsp4HI	GCNGC	5 cut(s)	91, 94, 312, 378, 880
FspBI	CTAG	3 cut(s)	420, 846, 873
GlaI	GCGC	3 cut(s)	131, 410, 878
GluI	GCNGC	5 cut(s)	91, 94, 312, 378, 880
GsaI	CCCAGC	2 cut(s)	354, 735
GsuI	CTGGAG	1 cut(s)	696
HaeIII	GGCC	4 cut(s)	105, 187, 433, 703
HapII	CCGG	3 cut(s)	106, 163, 188
HhaI	GCGC	3 cut(s)	132, 411, 879
Hin1II	CATG	2 cut(s)	11, 695
Hin6I	GCGC	3 cut(s)	130, 409, 877
HinP1I	GCGC	3 cut(s)	130, 409, 877
HinfI	GANTC	4 cut(s)	26, 299, 572, 665
HpaII	CCGG	3 cut(s)	106, 163, 188
HphI	GGTGA	7 cut(s)	581, 606, 611, 627, 698, 825, 861
Hpy166II	GTNNAC	3 cut(s)	238, 491, 635
Hpy188I	TCNGA	2 cut(s)	75, 428
Hpy188III	TCNNGA	9 cut(s)	163, 176, 230, 519, 620, 692, 815, 828, 852
Hpy8I	GTNNAC	3 cut(s)	238, 491, 635
Hpy99I	CGWCG	1 cut(s)	567
HpyAV	CCTTC	3 cut(s)	585, 693, 746
HpyCH4III	ACNGT	1 cut(s)	68
HpyCH4IV	ACGT	2 cut(s)	475, 631
HpyCH4V	TGCA	5 cut(s)	183, 281, 289, 314, 380
HpyF10VI	GCNNNNNNNGC	7 cut(s)	90, 102, 127, 136, 193, 317, 737
HpyF3I	CTNAG	3 cut(s)	197, 321, 861
HpySE526I	ACGT	2 cut(s)	475, 631
Hsp92II	CATG	2 cut(s)	11, 695
HspAI	GCGC	3 cut(s)	130, 409, 877
Kpn2I	TCCGGA	1 cut(s)	162
KpnI	GGTACC	1 cut(s)	532
Ksp22I	TGATCA	1 cut(s)	688
KspI	CCGCGG	1 cut(s)	24
Kzo9I	GATC	6 cut(s)	458, 688, 694, 809, 830, 854
LguI	GCTCTTC	1 cut(s)	186
LmnI	GCTCC	2 cut(s)	136, 559
Lsp1109I	GCAGC	2 cut(s)	298, 364
LweI	GCATC	2 cut(s)	396, 833
MaeI	CTAG	3 cut(s)	420, 846, 873
MaeII	ACGT	2 cut(s)	475, 631
MaeIII	GTNAC	3 cut(s)	599, 612, 620
MalI	GATC	6 cut(s)	460, 690, 696, 811, 832, 856
MbiI	CCGCTC	1 cut(s)	534
MboI	GATC	6 cut(s)	458, 688, 694, 809, 830, 854
MboII	GAAGA	3 cut(s)	123, 203, 468
MfeI	CAATTG	1 cut(s)	802
MflI	RGATCY	2 cut(s)	809, 854
MluCI	AATT	3 cut(s)	290, 342, 802
MroI	TCCGGA	1 cut(s)	162
MslI	CAYNNNNRTG	1 cut(s)	333
MspA1I	CMGCKG	1 cut(s)	23
MspI	CCGG	3 cut(s)	106, 163, 188
MspR9I	CCNGG	2 cut(s)	107, 714
MunI	CAATTG	1 cut(s)	802
MvaI	CCWGG	1 cut(s)	714
MvnI	CGCG	1 cut(s)	23
MwoI	GCNNNNNNNGC	7 cut(s)	90, 102, 127, 136, 193, 317, 737
NciI	CCSGG	1 cut(s)	107
NdeI	CATATG	1 cut(s)	330
NdeII	GATC	6 cut(s)	458, 688, 694, 809, 830, 854
NlaIII	CATG	2 cut(s)	11, 695
NlaIV	GGNNCC	3 cut(s)	204, 267, 530
NmeAIII	GCCGAG	1 cut(s)	147
NmuCI	GTSAC	3 cut(s)	599, 612, 620
PagI	TCATGA	1 cut(s)	691
PciSI	GCTCTTC	1 cut(s)	186
PfeI	GAWTC	4 cut(s)	26, 299, 572, 665
PkrI	GCNGC	5 cut(s)	92, 95, 313, 379, 881
Psp6I	CCWGG	1 cut(s)	712
PspEI	GGTNACC	2 cut(s)	599, 612
PspFI	CCCAGC	2 cut(s)	350, 731
PspGI	CCWGG	1 cut(s)	712
PspN4I	GGNNCC	3 cut(s)	204, 267, 530
PspPI	GGNCC	3 cut(s)	160, 431, 849
PstI	CTGCAG	2 cut(s)	316, 382
PsuI	RGATCY	2 cut(s)	809, 854
RsaI	GTAC	3 cut(s)	50, 62, 530
RsaNI	GTAC	3 cut(s)	49, 61, 529
RseI	CAYNNNNRTG	1 cut(s)	333
SacII	CCGCGG	1 cut(s)	24
SapI	GCTCTTC	1 cut(s)	186
SatI	GCNGC	5 cut(s)	91, 94, 312, 378, 880
Sau3AI	GATC	6 cut(s)	458, 688, 694, 809, 830, 854
Sau96I	GGNCC	3 cut(s)	160, 431, 849
ScaI	AGTACT	1 cut(s)	62
ScrFI	CCNGG	2 cut(s)	107, 714
SfaNI	GCATC	2 cut(s)	396, 833
SfcI	CTRYAG	3 cut(s)	64, 312, 378
Sfr303I	CCGCGG	1 cut(s)	24
SgrBI	CCGCGG	1 cut(s)	24
SinI	GGWCC	2 cut(s)	160, 849
SmiMI	CAYNNNNRTG	1 cut(s)	333
SmlI	CTYRAG	2 cut(s)	535, 674
SmoI	CTYRAG	2 cut(s)	535, 674
Sse9I	AATT	3 cut(s)	290, 342, 802
SsiI	CCGC	7 cut(s)	21, 23, 90, 93, 96, 119, 532
SspMI	CTAG	3 cut(s)	420, 846, 873
StyD4I	CCNGG	2 cut(s)	105, 712
StyI	CCWWGG	4 cut(s)	246, 608, 650, 872
TaaI	ACNGT	1 cut(s)	68
TaiI	ACGT	2 cut(s)	478, 634
TaqI	TCGA	2 cut(s)	697, 770
TasI	AATT	3 cut(s)	290, 342, 802
TatI	WGTACW	1 cut(s)	60
TauI	GCSGC	2 cut(s)	93, 96
TfiI	GAWTC	4 cut(s)	26, 299, 572, 665
TseFI	GTSAC	3 cut(s)	599, 612, 620
TseI	GCWGC	3 cut(s)	311, 377, 879
Tsp45I	GTSAC	3 cut(s)	599, 612, 620
TspDTI	ATGAA	2 cut(s)	321, 347
TspGWI	ACGGA	1 cut(s)	162
VpaK11BI	GGWCC	2 cut(s)	160, 849
XapI	RAATTY	1 cut(s)	342
XcmI	CCANNNNNNNNNTGG	1 cut(s)	801
XmaJI	CCTAGG	1 cut(s)	872
XmiI	GTMKAC	1 cut(s)	237
XspI	CTAG	3 cut(s)	420, 846, 873
ZrmI	AGTACT	1 cut(s)	62

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.