Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0014803

Physical Location & Seq

Genomic Coordinates Forward (+)

19056157 .. 19057368

Gene Structure 1212 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g24730.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGAGCGCCGGCGCCGGCGATAACAGAGTGAAGGGGTCGTGGAGTCCACAGGAGGACGCGACTCTGATCAAGCTCGTGGCGGAGCACGGCCCGCGCAACTGGTCATTGATCAGCTCCGGTATTCCAGGTAGGTCAGGTAAGTCGTGTAGGCTGCGGTGGTGCAACCAGCTCAGCCCCGACGTGCAGCACAAGCCCTTCACGCCGGCGGAGGACGCGGCTATTGTTACAGCCCACGCGCTCCACGGCAACAAGTGGGCCACAATCGCTCGGCTCCTTCCTGGACGTACCGACAATGCGATCAAGAACCACTGGAACTCCACACTCCGGCGGAGAAGGCTGGCCGAGTCGAGCTCGACTTCGTCGGAGTCCATGAAGCGGTTGATCGTCGGCGGCGGCGGCGCGGAGCCGGAGATGAAGCGGCAGTGTTTGCGTGGGGCGGAGGAGGAGAGTGGTTTCAAAGCGGTTACGGCGGGAGTGGAGGGCGTGCTGACGTCACTGACGCTGTCGCCGCCTGGGGAGAAAGTGGGAGACGACGTCGTTTTGAAGAGTGAGGAGGAGGAAGTGGAGGAGGAAGAGGAGAATGAGGAGCATCAAGAGGAGGCGGTGGATGACGGGGAGAAATGTACGGTGGAGATGGAGGAGACGTGTTTGATGAGCATGATGCAGAGGATGATAGCCCAGGAGGTGAGGAACTACATCGAGAGCTTACGGGCCGAGAATGGGCTTGCGTTTGGGCTTCAGTCGGCGGTCCATGATCCGAAATGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0006952 GO:0006970 GO:0008150 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009737 GO:0009739 GO:0009751 GO:0009753 GO:0009889 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010646 GO:0010647 GO:0010928 GO:0010929 GO:0014070 GO:0019219 GO:0019222 GO:0023051 GO:0023056 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0033993 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0046677 GO:0046686 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048869 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0097305 GO:0098542 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1903506 GO:2000022 GO:2000031 GO:2000112 GO:2001023 GO:2001038 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04151 ko05166 map04151 map05166

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

256

Amino Acids

27.92

Weight (kDa)

5.16

Isoelectric Point (pI)

67.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	11 - 57	2.2e-18	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	14 - 72	3e-16	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	64 - 107	6.6e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	66 - 111	8.3e-08	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014803)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g24730
malus_domestica	MD01G1155100.v1.1 MD07G1224200.v1.1
prunus_persica	Prupe.2G252700_v2.0.a1
pyrus_communis	pycom01g17250 pycom07g20280
rosa_chinensis	RchiOBHm_Chr1g0370581
rosa_laevigata	RLG00000027025
rosa_multiflora	Rmu_co8167220.1_g000001 Rmu_sc0002021.1_g000013 Rmu_sc0033719.1_g000001
rosa_roxburghii	Rroxscaffold_4G00286410
rosa_rugosa	Rorug01G0357600
rosa_samantha	Rh1AG367100 Rh1BG330600 Rh1DG362100
rosa_wichuraiana	Rw1G032310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	494, 537
AccB1I	GGYRCC	1 cut(s)	11
AccII	CGCG	5 cut(s)	59, 94, 215, 236, 401
AclWI	GGATC	1 cut(s)	749
AcoI	YGGCCR	1 cut(s)	339
AcuI	CTGAAG	1 cut(s)	722
AcyI	GRCGYC	3 cut(s)	12, 491, 534
AfaI	GTAC	2 cut(s)	286, 625
AfiI	CCNNNNNNNGG	3 cut(s)	324, 375, 720
AflIII	ACRYGT	1 cut(s)	644
AgsI	TTSAA	2 cut(s)	457, 544
AjiI	CACGTC	2 cut(s)	181, 645
AjnI	CCWGG	4 cut(s)	124, 277, 511, 678
AluBI	AGCT	5 cut(s)	73, 114, 169, 351, 705
AluI	AGCT	5 cut(s)	73, 114, 169, 351, 705
Alw21I	GWGCWC	2 cut(s)	87, 353
Alw26I	GTCTC	2 cut(s)	522, 635
AlwI	GGATC	1 cut(s)	749
AoxI	GGCC	4 cut(s)	88, 255, 339, 711
ApeKI	GCWGC	2 cut(s)	151, 184
AspLEI	GCGC	5 cut(s)	8, 14, 96, 238, 401
AspS9I	GGNCC	4 cut(s)	89, 255, 711, 748
AsuHPI	GGTGA	1 cut(s)	697
AvaII	GGWCC	1 cut(s)	748
BanI	GGYRCC	1 cut(s)	11
BanII	GRGCYC	1 cut(s)	353
BauI	CACGAG	1 cut(s)	74
Bbv12I	GWGCWC	2 cut(s)	87, 353
BbvI	GCAGC	2 cut(s)	138, 196
BccI	CCATC	1 cut(s)	628
BceAI	ACGGC	3 cut(s)	103, 259, 483
BciT130I	CCWGG	4 cut(s)	126, 279, 513, 680
BclI	TGATCA	2 cut(s)	66, 108
BcoDI	GTCTC	2 cut(s)	522, 635
BfoI	RGCGCY	2 cut(s)	9, 15
BisI	GCNGC	8 cut(s)	152, 185, 216, 391, 394, 397, 419, 509
BlpI	GCTNAGC	1 cut(s)	170
BlsI	GCNGC	8 cut(s)	153, 186, 217, 392, 395, 398, 420, 510
Bme1390I	CCNGG	4 cut(s)	126, 279, 513, 680
Bme18I	GGWCC	1 cut(s)	748
BmgBI	CACGTC	2 cut(s)	181, 645
BmgT120I	GGNCC	4 cut(s)	89, 255, 711, 748
BmiI	GGNNCC	3 cut(s)	13, 272, 405
BmrFI	CCNGG	4 cut(s)	126, 279, 513, 680
BmsI	GCATC	2 cut(s)	598, 651
BplI	GAGNNNNNCTC	2 cut(s)	335, 367
Bpu1102I	GCTNAGC	1 cut(s)	170
BsaHI	GRCGYC	3 cut(s)	12, 491, 534
BsaJI	CCNNGG	3 cut(s)	241, 512, 678
BsaWI	WCCGGW	1 cut(s)	116
BsaXI	ACNNNNNCTCC	6 cut(s)	299, 329, 519, 549, 629, 659
Bsc4I	CCNNNNNNNGG	3 cut(s)	324, 375, 720
Bse118I	RCCGGY	3 cut(s)	8, 14, 202
Bse1I	ACTGG	2 cut(s)	104, 314
BseBI	CCWGG	4 cut(s)	126, 279, 513, 680
BseDI	CCNNGG	3 cut(s)	241, 512, 678
BseGI	GGATG	2 cut(s)	613, 675
BseLI	CCNNNNNNNGG	3 cut(s)	324, 375, 720
BseMII	CTCAG	1 cut(s)	184
BseNI	ACTGG	2 cut(s)	104, 314
BseRI	GAGGAG	9 cut(s)	455, 458, 566, 569, 581, 590, 599, 611, 653
BseXI	GCAGC	2 cut(s)	138, 196
BsgI	GTGCAG	1 cut(s)	203
Bsh1236I	CGCG	5 cut(s)	59, 94, 215, 236, 401
BshFI	GGCC	4 cut(s)	90, 257, 341, 713
BshNI	GGYRCC	1 cut(s)	11
BsiHKAI	GWGCWC	2 cut(s)	87, 353
BsiSI	CCGG	6 cut(s)	9, 15, 117, 203, 325, 407
BslI	CCNNNNNNNGG	3 cut(s)	324, 375, 720
BsmAI	GTCTC	2 cut(s)	522, 635
BsmBI	CGTCTC	2 cut(s)	522, 635
BsnI	GGCC	4 cut(s)	90, 257, 341, 713
Bsp1286I	GDGCHC	2 cut(s)	87, 353
Bsp143I	GATC	5 cut(s)	66, 108, 297, 381, 754
Bsp1720I	GCTNAGC	1 cut(s)	170
BspANI	GGCC	4 cut(s)	90, 257, 341, 713
BspCNI	CTCAG	1 cut(s)	183
BspFNI	CGCG	5 cut(s)	59, 94, 215, 236, 401
BspLI	GGNNCC	3 cut(s)	13, 272, 405
BspPI	GGATC	1 cut(s)	749
BspT107I	GGYRCC	1 cut(s)	11
BsrFI	RCCGGY	3 cut(s)	8, 14, 202
BsrI	ACTGG	2 cut(s)	104, 314
BssAI	RCCGGY	3 cut(s)	8, 14, 202
BssECI	CCNNGG	3 cut(s)	241, 512, 678
BssMI	GATC	5 cut(s)	66, 108, 297, 381, 754
BssNI	GRCGYC	3 cut(s)	12, 491, 534
BssSI	CACGAG	1 cut(s)	74
Bst2BI	CACGAG	1 cut(s)	74
Bst2UI	CCWGG	4 cut(s)	126, 279, 513, 680
Bst4CI	ACNGT	1 cut(s)	628
Bst6I	CTCTTC	2 cut(s)	539, 567
BstACI	GRCGYC	3 cut(s)	12, 491, 534
BstAPI	GCANNNNNTGC	1 cut(s)	427
BstC8I	GCNNGC	7 cut(s)	10, 16, 92, 204, 339, 485, 726
BstDEI	CTNAG	1 cut(s)	170
BstDSI	CCRYGG	1 cut(s)	241
BstF5I	GGATG	2 cut(s)	613, 675
BstFNI	CGCG	5 cut(s)	59, 94, 215, 236, 401
BstH2I	RGCGCY	2 cut(s)	9, 15
BstHHI	GCGC	5 cut(s)	8, 14, 96, 238, 401
BstKTI	GATC	5 cut(s)	69, 111, 300, 384, 757
BstMAI	GTCTC	2 cut(s)	522, 635
BstMBI	GATC	5 cut(s)	66, 108, 297, 381, 754
BstNI	CCWGG	4 cut(s)	126, 279, 513, 680
BstSCI	CCNGG	4 cut(s)	124, 277, 511, 678
BstUI	CGCG	5 cut(s)	59, 94, 215, 236, 401
BstV1I	GCAGC	2 cut(s)	138, 196
BsuRI	GGCC	4 cut(s)	90, 257, 341, 713
BtgI	CCRYGG	1 cut(s)	241
BtrI	CACGTC	2 cut(s)	181, 645
BtsCI	GGATG	2 cut(s)	613, 675
BtsI	GCAGTG	1 cut(s)	428
BtsIMutI	CAGTG	3 cut(s)	307, 428, 494
Cac8I	GCNNGC	7 cut(s)	10, 16, 92, 204, 339, 485, 726
CfoI	GCGC	5 cut(s)	8, 14, 96, 238, 401
Cfr10I	RCCGGY	3 cut(s)	8, 14, 202
Cfr13I	GGNCC	4 cut(s)	89, 255, 711, 748
CseI	GACGC	3 cut(s)	65, 221, 508
Csp6I	GTAC	2 cut(s)	285, 624
CviAII	CATG	3 cut(s)	370, 658, 752
CviQI	GTAC	2 cut(s)	285, 624
DdeI	CTNAG	1 cut(s)	170
DinI	GGCGCC	1 cut(s)	13
DpnI	GATC	5 cut(s)	68, 110, 299, 383, 756
DpnII	GATC	5 cut(s)	66, 108, 297, 381, 754
EaeI	YGGCCR	1 cut(s)	339
Eam1104I	CTCTTC	2 cut(s)	539, 567
EarI	CTCTTC	2 cut(s)	539, 567
EciI	GGCGGA	4 cut(s)	95, 221, 343, 452
Ecl136II	GAGCTC	1 cut(s)	351
Eco24I	GRGCYC	1 cut(s)	353
Eco47I	GGWCC	1 cut(s)	748
Eco53kI	GAGCTC	1 cut(s)	351
Eco57I	CTGAAG	1 cut(s)	722
EcoICRI	GAGCTC	1 cut(s)	351
EcoRII	CCWGG	4 cut(s)	124, 277, 511, 678
EcoT38I	GRGCYC	1 cut(s)	353
EgeI	GGCGCC	1 cut(s)	13
EheI	GGCGCC	1 cut(s)	13
Esp3I	CGTCTC	2 cut(s)	522, 635
FaeI	CATG	3 cut(s)	373, 661, 755
FaiI	YATR	3 cut(s)	371, 659, 753
FatI	CATG	3 cut(s)	369, 657, 751
FauI	CCCGC	2 cut(s)	99, 463
FbaI	TGATCA	2 cut(s)	66, 108
Fnu4HI	GCNGC	8 cut(s)	152, 185, 216, 391, 394, 397, 419, 509
FokI	GGATG	2 cut(s)	620, 682
FriOI	GRGCYC	1 cut(s)	353
Fsp4HI	GCNGC	8 cut(s)	152, 185, 216, 391, 394, 397, 419, 509
GlaI	GCGC	5 cut(s)	7, 13, 95, 237, 400
GluI	GCNGC	8 cut(s)	152, 185, 216, 391, 394, 397, 419, 509
HaeII	RGCGCY	2 cut(s)	9, 15
HaeIII	GGCC	4 cut(s)	90, 257, 341, 713
HapII	CCGG	6 cut(s)	9, 15, 117, 203, 325, 407
HgaI	GACGC	3 cut(s)	65, 221, 508
HhaI	GCGC	5 cut(s)	8, 14, 96, 238, 401
Hin1I	GRCGYC	3 cut(s)	12, 491, 534
Hin1II	CATG	3 cut(s)	373, 661, 755
Hin6I	GCGC	5 cut(s)	6, 12, 94, 236, 399
HinP1I	GCGC	5 cut(s)	6, 12, 94, 236, 399
HinfI	GANTC	4 cut(s)	43, 61, 344, 365
HpaII	CCGG	6 cut(s)	9, 15, 117, 203, 325, 407
HphI	GGTGA	1 cut(s)	697
Hpy166II	GTNNAC	1 cut(s)	47
Hpy188I	TCNGA	3 cut(s)	66, 364, 759
Hpy188III	TCNNGA	3 cut(s)	301, 593, 700
Hpy8I	GTNNAC	1 cut(s)	47
Hpy99I	CGWCG	5 cut(s)	182, 364, 389, 536, 539
HpyAV	CCTTC	4 cut(s)	25, 205, 284, 327
HpyCH4III	ACNGT	1 cut(s)	628
HpyCH4IV	ACGT	5 cut(s)	180, 283, 491, 534, 644
HpyCH4V	TGCA	3 cut(s)	162, 184, 664
HpyF3I	CTNAG	1 cut(s)	170
HpySE526I	ACGT	5 cut(s)	180, 283, 491, 534, 644
Hsp92I	GRCGYC	3 cut(s)	12, 491, 534
Hsp92II	CATG	3 cut(s)	373, 661, 755
HspAI	GCGC	5 cut(s)	6, 12, 94, 236, 399
KasI	GGCGCC	1 cut(s)	11
KroI	GCCGGC	3 cut(s)	8, 14, 202
KroNI	GCCGGC	3 cut(s)	10, 16, 204
Ksp22I	TGATCA	2 cut(s)	66, 108
Kzo9I	GATC	5 cut(s)	66, 108, 297, 381, 754
LmnI	GCTCC	6 cut(s)	82, 119, 243, 276, 403, 586
Lsp1109I	GCAGC	2 cut(s)	138, 196
LweI	GCATC	2 cut(s)	598, 651
MaeII	ACGT	5 cut(s)	180, 283, 491, 534, 644
MaeIII	GTNAC	3 cut(s)	223, 463, 492
MalI	GATC	5 cut(s)	68, 110, 299, 383, 756
MboI	GATC	5 cut(s)	66, 108, 297, 381, 754
MboII	GAAGA	2 cut(s)	556, 584
MhlI	GDGCHC	2 cut(s)	87, 353
Mly113I	GGCGCC	1 cut(s)	12
MlyI	GAGTC	4 cut(s)	52, 55, 353, 374
MmeI	TCCRAC	1 cut(s)	342
MreI	CGCCGGCG	3 cut(s)	8, 14, 202
MroNI	GCCGGC	3 cut(s)	8, 14, 202
MspI	CCGG	6 cut(s)	9, 15, 117, 203, 325, 407
MspR9I	CCNGG	4 cut(s)	126, 279, 513, 680
MvaI	CCWGG	4 cut(s)	126, 279, 513, 680
MvnI	CGCG	5 cut(s)	59, 94, 215, 236, 401
NaeI	GCCGGC	3 cut(s)	10, 16, 204
NarI	GGCGCC	1 cut(s)	12
NdeII	GATC	5 cut(s)	66, 108, 297, 381, 754
NgoMIV	GCCGGC	3 cut(s)	8, 14, 202
NlaIII	CATG	3 cut(s)	373, 661, 755
NlaIV	GGNNCC	3 cut(s)	13, 272, 405
NmeAIII	GCCGAG	3 cut(s)	247, 367, 739
NmuCI	GTSAC	1 cut(s)	492
PdiI	GCCGGC	3 cut(s)	10, 16, 204
PflFI	GACNNNGTC	3 cut(s)	358, 502, 533
PfoI	TCCNGGA	1 cut(s)	277
PkrI	GCNGC	8 cut(s)	153, 186, 217, 392, 395, 398, 420, 510
PleI	GAGTC	4 cut(s)	51, 55, 352, 373
PluTI	GGCGCC	1 cut(s)	15
PpsI	GAGTC	4 cut(s)	51, 55, 352, 373
Psp124BI	GAGCTC	1 cut(s)	353
Psp6I	CCWGG	4 cut(s)	124, 277, 511, 678
PspGI	CCWGG	4 cut(s)	124, 277, 511, 678
PspN4I	GGNNCC	3 cut(s)	13, 272, 405
PspPI	GGNCC	4 cut(s)	89, 255, 711, 748
PsyI	GACNNNGTC	3 cut(s)	358, 502, 533
RsaI	GTAC	2 cut(s)	286, 625
RsaNI	GTAC	2 cut(s)	285, 624
SacI	GAGCTC	1 cut(s)	353
SatI	GCNGC	8 cut(s)	152, 185, 216, 391, 394, 397, 419, 509
Sau3AI	GATC	5 cut(s)	66, 108, 297, 381, 754
Sau96I	GGNCC	4 cut(s)	89, 255, 711, 748
SchI	GAGTC	4 cut(s)	52, 55, 353, 374
ScrFI	CCNGG	4 cut(s)	126, 279, 513, 680
SduI	GDGCHC	2 cut(s)	87, 353
SfaNI	GCATC	2 cut(s)	598, 651
SfoI	GGCGCC	1 cut(s)	13
SgrAI	CRCCGGYG	3 cut(s)	8, 14, 202
SinI	GGWCC	1 cut(s)	748
SspDI	GGCGCC	1 cut(s)	11
SstI	GAGCTC	1 cut(s)	353
StyD4I	CCNGG	4 cut(s)	124, 277, 511, 678
TaaI	ACNGT	1 cut(s)	628
TaiI	ACGT	5 cut(s)	183, 286, 494, 537, 647
TaqI	TCGA	3 cut(s)	347, 353, 699
TauI	GCSGC	6 cut(s)	218, 393, 396, 399, 421, 511
TscAI	CASTG	3 cut(s)	314, 428, 501
TseFI	GTSAC	1 cut(s)	492
TseI	GCWGC	2 cut(s)	151, 184
Tsp45I	GTSAC	1 cut(s)	492
TspDTI	ATGAA	2 cut(s)	386, 428
TspRI	CASTG	3 cut(s)	314, 428, 501
Tth111I	GACNNNGTC	3 cut(s)	358, 502, 533
VpaK11BI	GGWCC	1 cut(s)	748
ZraI	GACGTC	2 cut(s)	492, 535

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.