Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0014803

Physical Location & Seq

Genomic Coordinates Forward (+)

30088625 .. 30089386

Gene Structure 762 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1224200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGACGACGATGGGAGCGATGAGCAGTGAGGATCGCGTGACGGGGTCGTGGAACCCGCAGGAGGACGCCACCCTGATCAAATTGGTGGCTCAGCACGGCCCCAGCAACTGGTCCCTCATCAGCACCGGCATTCCCGGCCGCTCCGGCAAGTCCTGCCGCCTCCGCTGGTGCAACCAGCTCTGCCCCACCGTCCAGCACAAGCCCTTTTCGCCTCAGGAGGACTCCATTATAATCCAGGCCCACGCCCTCCACGGAAACAAGTGGGCCACCATCGCCCGCCTCCTTCCCGGCCGCACCGACAACGCCATCAAGAACCACTGGAACTCCACTCTGCGGCGGTGGCGGCGCCAACTCGCCAAGTTGTCTTCCGAGTCGTCCTGTTCCGACTCGGCGGCCGCGCACGGGGAAGAGCCGGACTTGAAGCGGCAGTGCCTACGCGCGTCGCCGGAGCATGAGAGTTTGAAGGCGGACGCGGGAGGGGAGGGAGTGATAGTCAAGACGTCGCTGACGCTATCGCCGCCTGGTGAGAATGCGGAGAACGATGTCGCTGTGAAAAGTGAGGAGGAAGAACACGATCGCGAAGCGGTGGACAATAACGACGATGGGGAGAAATGTGCGGTGGAGATGGATGAGACGTGTTTGCTGACGATCATGCAGCGGATGATAGCGCAGGAAGTCAGGAATTACATCTACGGCTTACGGCCCGATGGTGGGCCCACATTTGGACTGCACTCCGCGCATCAAAACGAAAACGACGCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0006952 GO:0006970 GO:0008150 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009737 GO:0009739 GO:0009751 GO:0009753 GO:0009889 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010646 GO:0010647 GO:0010928 GO:0010929 GO:0014070 GO:0019219 GO:0019222 GO:0023051 GO:0023056 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0033993 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0046677 GO:0046686 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048869 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0097305 GO:0098542 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1903506 GO:2000022 GO:2000031 GO:2000112 GO:2001023 GO:2001038 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04151 ko05166 map04151 map05166

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

254

Amino Acids

27.87

Weight (kDa)

5.58

Isoelectric Point (pI)

53.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	15 - 60	4.8e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	17 - 74	1.9e-15	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	67 - 110	4e-18	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	69 - 113	6.9e-09	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014803)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g24730
malus_domestica	MD01G1155100.v1.1 MD07G1224200.v1.1
prunus_persica	Prupe.2G252700_v2.0.a1
pyrus_communis	pycom01g17250 pycom07g20280
rosa_chinensis	RchiOBHm_Chr1g0370581
rosa_laevigata	RLG00000027025
rosa_multiflora	Rmu_co8167220.1_g000001 Rmu_sc0002021.1_g000013 Rmu_sc0033719.1_g000001
rosa_roxburghii	Rroxscaffold_4G00286410
rosa_rugosa	Rorug01G0357600
rosa_samantha	Rh1AG367100 Rh1BG330600 Rh1DG362100
rosa_wichuraiana	Rw1G032310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	230
AatII	GACGTC	1 cut(s)	503
AccB1I	GGYRCC	1 cut(s)	345
AccB7I	CCANNNNNTGG	1 cut(s)	108
AccBSI	CCGCTC	1 cut(s)	141
AccII	CGCG	8 cut(s)	36, 398, 438, 440, 473, 579, 737, 758
AclWI	GGATC	1 cut(s)	39
AcoI	YGGCCR	3 cut(s)	136, 289, 393
AcyI	GRCGYC	3 cut(s)	66, 346, 500
AfiI	CCNNNNNNNGG	7 cut(s)	61, 108, 333, 402, 710, 711, 722
AflIII	ACRYGT	2 cut(s)	635, 756
AgsI	TTSAA	2 cut(s)	421, 463
AjiI	CACGTC	1 cut(s)	636
AjnI	CCWGG	2 cut(s)	234, 520
AluBI	AGCT	1 cut(s)	178
AluI	AGCT	1 cut(s)	178
Alw26I	GTCTC	1 cut(s)	626
AlwI	GGATC	1 cut(s)	39
AlwNI	CAGNNNCTG	1 cut(s)	108
AoxI	GGCC	8 cut(s)	97, 136, 237, 264, 289, 393, 701, 713
ApaI	GGGCCC	1 cut(s)	717
ApeKI	GCWGC	1 cut(s)	655
AspLEI	GCGC	5 cut(s)	348, 400, 440, 670, 739
AspS9I	GGNCC	7 cut(s)	98, 111, 238, 264, 702, 713, 714
AsuC2I	CCSGG	2 cut(s)	135, 288
AsuHPI	GGTGA	1 cut(s)	536
AvaII	GGWCC	1 cut(s)	111
AxyI	CCTNAGG	1 cut(s)	213
BaeGI	GKGCMC	1 cut(s)	717
BanI	GGYRCC	1 cut(s)	345
BanII	GRGCYC	1 cut(s)	717
BbsI	GAAGAC	1 cut(s)	357
BbvI	GCAGC	1 cut(s)	667
BccI	CCATC	6 cut(s)	4, 278, 314, 596, 619, 701
BceAI	ACGGC	3 cut(s)	112, 709, 716
BciT130I	CCWGG	2 cut(s)	236, 522
BclI	TGATCA	1 cut(s)	75
BcnI	CCSGG	2 cut(s)	135, 288
BcoDI	GTCTC	1 cut(s)	626
BfoI	RGCGCY	1 cut(s)	349
BglI	GCCNNNNNGGC	1 cut(s)	144
BlpI	GCTNAGC	1 cut(s)	90
Bme1390I	CCNGG	4 cut(s)	135, 236, 288, 522
Bme18I	GGWCC	1 cut(s)	111
BmgBI	CACGTC	1 cut(s)	636
BmgT120I	GGNCC	7 cut(s)	98, 111, 238, 264, 702, 713, 714
BmiI	GGNNCC	5 cut(s)	53, 100, 113, 347, 715
BmrFI	CCNGG	4 cut(s)	135, 236, 288, 522
BmsI	GCATC	1 cut(s)	748
BpiI	GAAGAC	1 cut(s)	357
Bpu1102I	GCTNAGC	1 cut(s)	90
BpuMI	CCSGG	2 cut(s)	135, 288
BsaHI	GRCGYC	3 cut(s)	66, 346, 500
BsaJI	CCNNGG	1 cut(s)	250
BsaXI	ACNNNNNCTCC	4 cut(s)	308, 338, 477, 507
Bsc4I	CCNNNNNNNGG	7 cut(s)	61, 108, 333, 402, 710, 711, 722
Bse118I	RCCGGY	1 cut(s)	125
Bse1I	ACTGG	2 cut(s)	113, 323
Bse21I	CCTNAGG	1 cut(s)	213
BseBI	CCWGG	2 cut(s)	236, 522
BseDI	CCNNGG	1 cut(s)	250
BseGI	GGATG	2 cut(s)	634, 666
BseLI	CCNNNNNNNGG	7 cut(s)	61, 108, 333, 402, 710, 711, 722
BseMII	CTCAG	2 cut(s)	104, 227
BseNI	ACTGG	2 cut(s)	113, 323
BseRI	GAGGAG	1 cut(s)	575
BseSI	GKGCMC	1 cut(s)	717
BseX3I	CGGCCG	3 cut(s)	136, 289, 393
BseXI	GCAGC	1 cut(s)	667
BseYI	CCCAGC	1 cut(s)	101
BsgI	GTGCAG	1 cut(s)	713
Bsh1236I	CGCG	8 cut(s)	36, 398, 438, 440, 473, 579, 737, 758
Bsh1285I	CGRYCG	4 cut(s)	139, 292, 396, 577
BshFI	GGCC	8 cut(s)	99, 138, 239, 266, 291, 395, 703, 715
BshNI	GGYRCC	1 cut(s)	345
BsiEI	CGRYCG	4 cut(s)	139, 292, 396, 577
BsiSI	CCGG	6 cut(s)	126, 135, 144, 288, 413, 446
BslFI	GGGAC	1 cut(s)	97
BslI	CCNNNNNNNGG	7 cut(s)	61, 108, 333, 402, 710, 711, 722
BsmAI	GTCTC	1 cut(s)	626
BsmBI	CGTCTC	1 cut(s)	626
BsmFI	GGGAC	1 cut(s)	97
BsmI	GAATGC	2 cut(s)	129, 535
BsnI	GGCC	8 cut(s)	99, 138, 239, 266, 291, 395, 703, 715
Bsp120I	GGGCCC	1 cut(s)	713
Bsp1286I	GDGCHC	1 cut(s)	717
Bsp143I	GATC	4 cut(s)	31, 75, 574, 648
Bsp1720I	GCTNAGC	1 cut(s)	90
Bsp68I	TCGCGA	1 cut(s)	579
BspANI	GGCC	8 cut(s)	99, 138, 239, 266, 291, 395, 703, 715
BspCNI	CTCAG	2 cut(s)	103, 226
BspFNI	CGCG	8 cut(s)	36, 398, 438, 440, 473, 579, 737, 758
BspLI	GGNNCC	5 cut(s)	53, 100, 113, 347, 715
BspPI	GGATC	1 cut(s)	39
BspQI	GCTCTTC	1 cut(s)	402
BspT107I	GGYRCC	1 cut(s)	345
BsrBI	CCGCTC	1 cut(s)	141
BsrFI	RCCGGY	1 cut(s)	125
BsrI	ACTGG	2 cut(s)	113, 323
BssAI	RCCGGY	1 cut(s)	125
BssECI	CCNNGG	1 cut(s)	250
BssMI	GATC	4 cut(s)	31, 75, 574, 648
BssNI	GRCGYC	3 cut(s)	66, 346, 500
Bst2UI	CCWGG	2 cut(s)	236, 522
Bst4CI	ACNGT	1 cut(s)	190
Bst6I	CTCTTC	1 cut(s)	402
BstACI	GRCGYC	3 cut(s)	66, 346, 500
BstAPI	GCANNNNNTGC	1 cut(s)	153
BstC8I	GCNNGC	1 cut(s)	277
BstDEI	CTNAG	2 cut(s)	90, 213
BstDSI	CCRYGG	1 cut(s)	250
BstF5I	GGATG	2 cut(s)	634, 666
BstFNI	CGCG	8 cut(s)	36, 398, 438, 440, 473, 579, 737, 758
BstH2I	RGCGCY	1 cut(s)	349
BstHHI	GCGC	5 cut(s)	348, 400, 440, 670, 739
BstKTI	GATC	4 cut(s)	34, 78, 577, 651
BstMAI	GTCTC	1 cut(s)	626
BstMBI	GATC	4 cut(s)	31, 75, 574, 648
BstMCI	CGRYCG	4 cut(s)	139, 292, 396, 577
BstNI	CCWGG	2 cut(s)	236, 522
BstSCI	CCNGG	4 cut(s)	133, 234, 286, 520
BstSLI	GKGCMC	1 cut(s)	717
BstUI	CGCG	8 cut(s)	36, 398, 438, 440, 473, 579, 737, 758
BstV1I	GCAGC	1 cut(s)	667
BstV2I	GAAGAC	1 cut(s)	357
BstZI	CGGCCG	3 cut(s)	136, 289, 393
Bsu36I	CCTNAGG	1 cut(s)	213
BsuRI	GGCC	8 cut(s)	99, 138, 239, 266, 291, 395, 703, 715
BtgI	CCRYGG	1 cut(s)	250
BtgZI	GCGATG	2 cut(s)	32, 256
BtrI	CACGTC	1 cut(s)	636
BtsCI	GGATG	2 cut(s)	634, 666
BtsI	GCAGTG	2 cut(s)	31, 434
BtsIMutI	CAGTG	3 cut(s)	31, 316, 434
BtuMI	TCGCGA	1 cut(s)	579
Cac8I	GCNNGC	1 cut(s)	277
CaiI	CAGNNNCTG	1 cut(s)	108
CciNI	GCGGCCGC	1 cut(s)	393
CfoI	GCGC	5 cut(s)	348, 400, 440, 670, 739
Cfr10I	RCCGGY	1 cut(s)	125
Cfr13I	GGNCC	7 cut(s)	98, 111, 238, 264, 702, 713, 714
CseI	GACGC	4 cut(s)	74, 429, 479, 517
CviAII	CATG	2 cut(s)	452, 652
DdeI	CTNAG	2 cut(s)	90, 213
DinI	GGCGCC	1 cut(s)	347
DpnI	GATC	4 cut(s)	33, 77, 576, 650
DpnII	GATC	4 cut(s)	31, 75, 574, 648
EaeI	YGGCCR	3 cut(s)	136, 289, 393
EagI	CGGCCG	3 cut(s)	136, 289, 393
Eam1104I	CTCTTC	1 cut(s)	402
EarI	CTCTTC	1 cut(s)	402
EciI	GGCGGA	1 cut(s)	482
EclXI	CGGCCG	3 cut(s)	136, 289, 393
Eco24I	GRGCYC	1 cut(s)	717
Eco47I	GGWCC	1 cut(s)	111
Eco52I	CGGCCG	3 cut(s)	136, 289, 393
Eco81I	CCTNAGG	1 cut(s)	213
EcoRII	CCWGG	2 cut(s)	234, 520
EcoT38I	GRGCYC	1 cut(s)	717
EgeI	GGCGCC	1 cut(s)	347
EheI	GGCGCC	1 cut(s)	347
Esp3I	CGTCTC	1 cut(s)	626
FaeI	CATG	2 cut(s)	455, 655
FaiI	YATR	3 cut(s)	230, 453, 653
FaqI	GGGAC	1 cut(s)	97
FatI	CATG	2 cut(s)	451, 651
FauI	CCCGC	3 cut(s)	63, 284, 466
FbaI	TGATCA	1 cut(s)	75
FokI	GGATG	2 cut(s)	641, 673
FriOI	GRGCYC	1 cut(s)	717
GlaI	GCGC	5 cut(s)	347, 399, 439, 669, 738
GsaI	CCCAGC	1 cut(s)	105
HaeII	RGCGCY	1 cut(s)	349
HaeIII	GGCC	8 cut(s)	99, 138, 239, 266, 291, 395, 703, 715
HapII	CCGG	6 cut(s)	126, 135, 144, 288, 413, 446
HgaI	GACGC	4 cut(s)	74, 429, 479, 517
HhaI	GCGC	5 cut(s)	348, 400, 440, 670, 739
Hin1I	GRCGYC	3 cut(s)	66, 346, 500
Hin1II	CATG	2 cut(s)	455, 655
Hin6I	GCGC	5 cut(s)	346, 398, 438, 668, 737
HinP1I	GCGC	5 cut(s)	346, 398, 438, 668, 737
HinfI	GANTC	3 cut(s)	221, 371, 386
HpaII	CCGG	6 cut(s)	126, 135, 144, 288, 413, 446
HphI	GGTGA	1 cut(s)	536
Hpy166II	GTNNAC	1 cut(s)	589
Hpy188I	TCNGA	2 cut(s)	370, 385
Hpy188III	TCNNGA	5 cut(s)	215, 310, 496, 578, 679
Hpy8I	GTNNAC	1 cut(s)	589
Hpy99I	CGWCG	5 cut(s)	10, 445, 505, 602, 758
HpyAV	CCTTC	2 cut(s)	293, 457
HpyCH4III	ACNGT	1 cut(s)	190
HpyCH4IV	ACGT	2 cut(s)	500, 635
HpyCH4V	TGCA	3 cut(s)	171, 655, 730
HpyF3I	CTNAG	2 cut(s)	90, 213
HpySE526I	ACGT	2 cut(s)	500, 635
Hsp92I	GRCGYC	3 cut(s)	66, 346, 500
Hsp92II	CATG	2 cut(s)	455, 655
HspAI	GCGC	5 cut(s)	346, 398, 438, 668, 737
KasI	GGCGCC	1 cut(s)	345
Ksp22I	TGATCA	1 cut(s)	75
Kzo9I	GATC	4 cut(s)	31, 75, 574, 648
LguI	GCTCTTC	1 cut(s)	402
LmnI	GCTCC	3 cut(s)	14, 146, 448
Lsp1109I	GCAGC	1 cut(s)	667
LweI	GCATC	1 cut(s)	748
MaeII	ACGT	2 cut(s)	500, 635
MaeIII	GTNAC	1 cut(s)	37
MalI	GATC	4 cut(s)	33, 77, 576, 650
MbiI	CCGCTC	1 cut(s)	141
MboI	GATC	4 cut(s)	31, 75, 574, 648
MboII	GAAGA	3 cut(s)	357, 419, 578
MhlI	GDGCHC	1 cut(s)	717
MluCI	AATT	2 cut(s)	80, 682
MluI	ACGCGT	1 cut(s)	756
Mly113I	GGCGCC	1 cut(s)	346
MlyI	GAGTC	3 cut(s)	215, 380, 380
MmeI	TCCRAC	1 cut(s)	408
MspA1I	CMGCKG	2 cut(s)	165, 658
MspI	CCGG	6 cut(s)	126, 135, 144, 288, 413, 446
MspR9I	CCNGG	4 cut(s)	135, 236, 288, 522
Mva1269I	GAATGC	2 cut(s)	129, 535
MvaI	CCWGG	2 cut(s)	236, 522
MvnI	CGCG	8 cut(s)	36, 398, 438, 440, 473, 579, 737, 758
NarI	GGCGCC	1 cut(s)	346
NciI	CCSGG	2 cut(s)	135, 288
NdeII	GATC	4 cut(s)	31, 75, 574, 648
NlaIII	CATG	2 cut(s)	455, 655
NlaIV	GGNNCC	5 cut(s)	53, 100, 113, 347, 715
NmeAIII	GCCGAG	1 cut(s)	368
NmuCI	GTSAC	1 cut(s)	37
NotI	GCGGCCGC	1 cut(s)	393
NruI	TCGCGA	1 cut(s)	579
PciSI	GCTCTTC	1 cut(s)	402
PcsI	WCGNNNNNNNCGW	1 cut(s)	14
PctI	GAATGC	2 cut(s)	129, 535
PflFI	GACNNNGTC	1 cut(s)	43
PflMI	CCANNNNNTGG	1 cut(s)	108
Ple19I	CGATCG	1 cut(s)	577
PleI	GAGTC	3 cut(s)	215, 379, 380
PluTI	GGCGCC	1 cut(s)	349
PpsI	GAGTC	3 cut(s)	215, 379, 380
PsiI	TTATAA	1 cut(s)	230
Psp6I	CCWGG	2 cut(s)	234, 520
PspFI	CCCAGC	1 cut(s)	101
PspGI	CCWGG	2 cut(s)	234, 520
PspN4I	GGNNCC	5 cut(s)	53, 100, 113, 347, 715
PspOMI	GGGCCC	1 cut(s)	713
PspPI	GGNCC	7 cut(s)	98, 111, 238, 264, 702, 713, 714
PstNI	CAGNNNCTG	1 cut(s)	108
PsyI	GACNNNGTC	1 cut(s)	43
PvuI	CGATCG	1 cut(s)	577
RruI	TCGCGA	1 cut(s)	579
SapI	GCTCTTC	1 cut(s)	402
Sau3AI	GATC	4 cut(s)	31, 75, 574, 648
Sau96I	GGNCC	7 cut(s)	98, 111, 238, 264, 702, 713, 714
SchI	GAGTC	3 cut(s)	215, 380, 380
ScrFI	CCNGG	4 cut(s)	135, 236, 288, 522
SduI	GDGCHC	1 cut(s)	717
SetI	ASST	3 cut(s)	180, 503, 638
SfaNI	GCATC	1 cut(s)	748
SfoI	GGCGCC	1 cut(s)	347
SinI	GGWCC	1 cut(s)	111
Sse9I	AATT	2 cut(s)	80, 682
SspDI	GGCGCC	1 cut(s)	345
StyD4I	CCNGG	4 cut(s)	133, 234, 286, 520
TaaI	ACNGT	1 cut(s)	190
TaiI	ACGT	2 cut(s)	503, 638
TasI	AATT	2 cut(s)	80, 682
TauI	GCSGC	9 cut(s)	141, 159, 294, 337, 346, 395, 398, 427, 520
TscAI	CASTG	3 cut(s)	31, 323, 434
TseFI	GTSAC	1 cut(s)	37
TseI	GCWGC	1 cut(s)	655
Tsp45I	GTSAC	1 cut(s)	37
TspGWI	ACGGA	1 cut(s)	267
TspRI	CASTG	3 cut(s)	31, 323, 434
Tth111I	GACNNNGTC	1 cut(s)	43
Van91I	CCANNNNNTGG	1 cut(s)	108
VpaK11BI	GGWCC	1 cut(s)	111
ZraI	GACGTC	1 cut(s)	501

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.