Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0014803

Physical Location & Seq

Genomic Coordinates Forward (+)

16599770 .. 16600507

Gene Structure 738 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g17250.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

ATGAGCGGTGAGGATCGCGTGAAGGGGTCGTGGAGCCCGCAGGAGGACGCCACCCTGATCAAACTGGTGGCCCAGCACGGCCCCCGCAACTGGTCCCTCATCAGCACCGGCATTCCCGGCCGCTCCGGCAAGTCCTGCCGCCTCCGCTGGTGCAATCAGCTCAGCCCCACCGTCCAGCACAAGCCCTTTTCGCCTCAGGAGGACTCCGTTATTATCCAGGCTCACGCCCTCCACGGCAATAAGTGGGCCACCATCGCCCGCCTCCTCCCCGGCCGCACCGACAATGCCATCAAAAATCACTGGAACTCCACTCTGCGGCGGGGACGCCAACGCGCCGAGTTGTCTTCCACGTCGTCCGGTTCCGACTCGGCTGCCGCGGTCGGGGACGAGCCGGACATGAAGCAGCAGTGCCTGCGGGCGTCACCTGTGCATGAGAGTCTGAAAGCAAACGCGGGAGGGGAGGGAGTGACAGTTGAGACGTCGCTGACGCTGTCGCCGCCAGGTGAGAAGGCGGAAAACGAGGTCGTATTGAAAAGTGAGGAGGAAGAACACGGTCACGAAGCGGTGGATAATAACGATGATGTGGAGAACTGTAGGGTGGAGACGGAGGAGACGTGTTTGCTGACGATCATGCAGCGGATGATAGCGCGGGAGGTCAGGAATTACATCGATAGCTTACGGGAGAATGGTGGGCCCACATTTGGGCTGCAGTCTGCAGCACATCAAAACGACCCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0006952 GO:0006970 GO:0008150 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009737 GO:0009739 GO:0009751 GO:0009753 GO:0009889 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010646 GO:0010647 GO:0010928 GO:0010929 GO:0014070 GO:0019219 GO:0019222 GO:0023051 GO:0023056 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0033993 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0046677 GO:0046686 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048869 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0097305 GO:0098542 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1903506 GO:2000022 GO:2000031 GO:2000112 GO:2001023 GO:2001038 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04151 ko05166 map04151 map05166

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

246

Amino Acids

26.85

Weight (kDa)

5.74

Isoelectric Point (pI)

52.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	8 - 54	3e-18	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	11 - 68	2.2e-15	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	61 - 104	2.4e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	63 - 113	3.1e-09	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014803)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g24730
malus_domestica	MD01G1155100.v1.1 MD07G1224200.v1.1
prunus_persica	Prupe.2G252700_v2.0.a1
pyrus_communis	pycom01g17250 pycom07g20280
rosa_chinensis	RchiOBHm_Chr1g0370581
rosa_laevigata	RLG00000027025
rosa_multiflora	Rmu_co8167220.1_g000001 Rmu_sc0002021.1_g000013 Rmu_sc0033719.1_g000001
rosa_roxburghii	Rroxscaffold_4G00286410
rosa_rugosa	Rorug01G0357600
rosa_samantha	Rh1AG367100 Rh1BG330600 Rh1DG362100
rosa_wichuraiana	Rw1G032310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	482
AccBSI	CCGCTC	2 cut(s)	6, 123
AccII	CGCG	5 cut(s)	18, 333, 377, 452, 649
AclWI	GGATC	1 cut(s)	21
AcoI	YGGCCR	2 cut(s)	118, 271
AcyI	GRCGYC	4 cut(s)	48, 325, 419, 479
AfiI	CCNNNNNNNGG	6 cut(s)	43, 90, 315, 381, 701, 702
AflIII	ACRYGT	1 cut(s)	614
AgsI	TTSAA	1 cut(s)	532
AjiI	CACGTC	2 cut(s)	351, 615
AjnI	CCWGG	2 cut(s)	216, 499
AluBI	AGCT	2 cut(s)	160, 675
AluI	AGCT	2 cut(s)	160, 675
Alw26I	GTCTC	3 cut(s)	470, 596, 605
AlwI	GGATC	1 cut(s)	21
AlwNI	CAGNNNCTG	1 cut(s)	412
AoxI	GGCC	6 cut(s)	69, 79, 118, 246, 271, 692
ApaI	GGGCCC	1 cut(s)	696
ApeKI	GCWGC	5 cut(s)	371, 403, 634, 706, 716
AspLEI	GCGC	2 cut(s)	335, 649
AspS9I	GGNCC	6 cut(s)	70, 80, 93, 246, 692, 693
AsuC2I	CCSGG	2 cut(s)	117, 270
AsuHPI	GGTGA	3 cut(s)	20, 414, 515
AvaII	GGWCC	1 cut(s)	93
AxyI	CCTNAGG	1 cut(s)	195
BaeGI	GKGCMC	1 cut(s)	696
BanII	GRGCYC	2 cut(s)	38, 696
BbsI	GAAGAC	1 cut(s)	336
BbvI	GCAGC	5 cut(s)	358, 415, 646, 693, 728
BccI	CCATC	2 cut(s)	260, 296
BceAI	ACGGC	2 cut(s)	94, 250
BcgI	CGANNNNNNTGC	2 cut(s)	353, 387
BciT130I	CCWGG	2 cut(s)	218, 501
BclI	TGATCA	1 cut(s)	57
BcnI	CCSGG	2 cut(s)	117, 270
BcoDI	GTCTC	3 cut(s)	470, 596, 605
BfmI	CTRYAG	3 cut(s)	592, 707, 714
BglI	GCCNNNNNGGC	1 cut(s)	126
BlpI	GCTNAGC	1 cut(s)	161
Bme1390I	CCNGG	4 cut(s)	117, 218, 270, 501
Bme18I	GGWCC	1 cut(s)	93
BmgBI	CACGTC	2 cut(s)	351, 615
BmgT120I	GGNCC	6 cut(s)	70, 80, 93, 246, 692, 693
BmiI	GGNNCC	5 cut(s)	35, 82, 95, 361, 694
BmrFI	CCNGG	4 cut(s)	117, 218, 270, 501
BpiI	GAAGAC	1 cut(s)	336
Bpu1102I	GCTNAGC	1 cut(s)	161
BpuMI	CCSGG	2 cut(s)	117, 270
Bsa29I	ATCGAT	1 cut(s)	669
BsaHI	GRCGYC	4 cut(s)	48, 325, 419, 479
BsaJI	CCNNGG	3 cut(s)	232, 268, 375
BsaWI	WCCGGW	1 cut(s)	356
BsaXI	ACNNNNNCTCC	6 cut(s)	290, 320, 456, 486, 599, 629
Bsc4I	CCNNNNNNNGG	6 cut(s)	43, 90, 315, 381, 701, 702
Bse118I	RCCGGY	1 cut(s)	107
Bse1I	ACTGG	3 cut(s)	69, 95, 305
Bse21I	CCTNAGG	1 cut(s)	195
BseBI	CCWGG	2 cut(s)	218, 501
BseCI	ATCGAT	1 cut(s)	669
BseDI	CCNNGG	3 cut(s)	232, 268, 375
BseGI	GGATG	1 cut(s)	645
BseLI	CCNNNNNNNGG	6 cut(s)	43, 90, 315, 381, 701, 702
BseMII	CTCAG	2 cut(s)	175, 209
BseNI	ACTGG	3 cut(s)	69, 95, 305
BseRI	GAGGAG	3 cut(s)	254, 554, 623
BseSI	GKGCMC	1 cut(s)	696
BseX3I	CGGCCG	2 cut(s)	118, 271
BseXI	GCAGC	5 cut(s)	358, 415, 646, 693, 728
BseYI	CCCAGC	1 cut(s)	72
Bsh1236I	CGCG	5 cut(s)	18, 333, 377, 452, 649
Bsh1285I	CGRYCG	3 cut(s)	121, 274, 381
BshFI	GGCC	6 cut(s)	71, 81, 120, 248, 273, 694
BshVI	ATCGAT	1 cut(s)	669
BsiEI	CGRYCG	3 cut(s)	121, 274, 381
BsiSI	CCGG	6 cut(s)	108, 117, 126, 270, 357, 392
BslFI	GGGAC	3 cut(s)	79, 336, 398
BslI	CCNNNNNNNGG	6 cut(s)	43, 90, 315, 381, 701, 702
BsmAI	GTCTC	3 cut(s)	470, 596, 605
BsmBI	CGTCTC	3 cut(s)	470, 596, 605
BsmFI	GGGAC	3 cut(s)	79, 336, 398
BsmI	GAATGC	1 cut(s)	111
BsnI	GGCC	6 cut(s)	71, 81, 120, 248, 273, 694
Bsp120I	GGGCCC	1 cut(s)	692
Bsp1286I	GDGCHC	2 cut(s)	38, 696
Bsp143I	GATC	3 cut(s)	13, 57, 627
Bsp1720I	GCTNAGC	1 cut(s)	161
BspANI	GGCC	6 cut(s)	71, 81, 120, 248, 273, 694
BspCNI	CTCAG	2 cut(s)	174, 208
BspDI	ATCGAT	1 cut(s)	669
BspFNI	CGCG	5 cut(s)	18, 333, 377, 452, 649
BspLI	GGNNCC	5 cut(s)	35, 82, 95, 361, 694
BspMAI	CTGCAG	2 cut(s)	711, 718
BspPI	GGATC	1 cut(s)	21
BsrBI	CCGCTC	2 cut(s)	6, 123
BsrFI	RCCGGY	1 cut(s)	107
BsrI	ACTGG	3 cut(s)	69, 95, 305
BssAI	RCCGGY	1 cut(s)	107
BssECI	CCNNGG	3 cut(s)	232, 268, 375
BssMI	GATC	3 cut(s)	13, 57, 627
BssNI	GRCGYC	4 cut(s)	48, 325, 419, 479
Bst2UI	CCWGG	2 cut(s)	218, 501
Bst4CI	ACNGT	4 cut(s)	172, 472, 554, 593
BstACI	GRCGYC	4 cut(s)	48, 325, 419, 479
BstAPI	GCANNNNNTGC	2 cut(s)	135, 412
BstC8I	GCNNGC	4 cut(s)	38, 259, 413, 417
BstDEI	CTNAG	2 cut(s)	161, 195
BstDSI	CCRYGG	2 cut(s)	232, 375
BstF5I	GGATG	1 cut(s)	645
BstFNI	CGCG	5 cut(s)	18, 333, 377, 452, 649
BstHHI	GCGC	2 cut(s)	335, 649
BstKTI	GATC	3 cut(s)	16, 60, 630
BstMAI	GTCTC	3 cut(s)	470, 596, 605
BstMBI	GATC	3 cut(s)	13, 57, 627
BstMCI	CGRYCG	3 cut(s)	121, 274, 381
BstMWI	GCNNNNNNNGC	8 cut(s)	117, 126, 135, 144, 190, 254, 412, 496
BstNI	CCWGG	2 cut(s)	218, 501
BstSCI	CCNGG	4 cut(s)	115, 216, 268, 499
BstSFI	CTRYAG	3 cut(s)	592, 707, 714
BstSLI	GKGCMC	1 cut(s)	696
BstUI	CGCG	5 cut(s)	18, 333, 377, 452, 649
BstV1I	GCAGC	5 cut(s)	358, 415, 646, 693, 728
BstV2I	GAAGAC	1 cut(s)	336
BstZI	CGGCCG	2 cut(s)	118, 271
Bsu15I	ATCGAT	1 cut(s)	669
Bsu36I	CCTNAGG	1 cut(s)	195
BsuRI	GGCC	6 cut(s)	71, 81, 120, 248, 273, 694
BsuTUI	ATCGAT	1 cut(s)	669
BtgI	CCRYGG	2 cut(s)	232, 375
BtgZI	GCGATG	1 cut(s)	238
BtrI	CACGTC	2 cut(s)	351, 615
BtsCI	GGATG	1 cut(s)	645
BtsI	GCAGTG	1 cut(s)	413
BtsIMutI	CAGTG	2 cut(s)	298, 413
Cac8I	GCNNGC	4 cut(s)	38, 259, 413, 417
CaiI	CAGNNNCTG	1 cut(s)	412
CfoI	GCGC	2 cut(s)	335, 649
Cfr10I	RCCGGY	1 cut(s)	107
Cfr13I	GGNCC	6 cut(s)	70, 80, 93, 246, 692, 693
Cfr42I	CCGCGG	1 cut(s)	378
ClaI	ATCGAT	1 cut(s)	669
CseI	GACGC	4 cut(s)	56, 333, 408, 496
CviAII	CATG	3 cut(s)	397, 431, 631
DdeI	CTNAG	2 cut(s)	161, 195
DpnI	GATC	3 cut(s)	15, 59, 629
DpnII	GATC	3 cut(s)	13, 57, 627
EaeI	YGGCCR	2 cut(s)	118, 271
EagI	CGGCCG	2 cut(s)	118, 271
EciI	GGCGGA	1 cut(s)	527
EclXI	CGGCCG	2 cut(s)	118, 271
Eco24I	GRGCYC	2 cut(s)	38, 696
Eco47I	GGWCC	1 cut(s)	93
Eco52I	CGGCCG	2 cut(s)	118, 271
Eco81I	CCTNAGG	1 cut(s)	195
EcoRII	CCWGG	2 cut(s)	216, 499
EcoT38I	GRGCYC	2 cut(s)	38, 696
Esp3I	CGTCTC	3 cut(s)	470, 596, 605
FaeI	CATG	3 cut(s)	400, 434, 634
FaiI	YATR	3 cut(s)	398, 432, 632
FaqI	GGGAC	3 cut(s)	79, 336, 398
FatI	CATG	3 cut(s)	396, 430, 630
FauI	CCCGC	7 cut(s)	45, 92, 266, 312, 408, 445, 642
FbaI	TGATCA	1 cut(s)	57
FokI	GGATG	1 cut(s)	652
FriOI	GRGCYC	2 cut(s)	38, 696
GlaI	GCGC	2 cut(s)	334, 648
GsaI	CCCAGC	1 cut(s)	76
HaeIII	GGCC	6 cut(s)	71, 81, 120, 248, 273, 694
HapII	CCGG	6 cut(s)	108, 117, 126, 270, 357, 392
HgaI	GACGC	4 cut(s)	56, 333, 408, 496
HhaI	GCGC	2 cut(s)	335, 649
Hin1I	GRCGYC	4 cut(s)	48, 325, 419, 479
Hin1II	CATG	3 cut(s)	400, 434, 634
Hin6I	GCGC	2 cut(s)	333, 647
HinP1I	GCGC	2 cut(s)	333, 647
HinfI	GANTC	3 cut(s)	203, 365, 436
HpaII	CCGG	6 cut(s)	108, 117, 126, 270, 357, 392
HphI	GGTGA	3 cut(s)	20, 414, 515
Hpy188I	TCNGA	2 cut(s)	364, 441
Hpy188III	TCNNGA	3 cut(s)	197, 557, 658
Hpy99I	CGWCG	2 cut(s)	355, 484
HpyAV	CCTTC	2 cut(s)	16, 502
HpyCH4III	ACNGT	4 cut(s)	172, 472, 554, 593
HpyCH4IV	ACGT	3 cut(s)	350, 479, 614
HpyCH4V	TGCA	5 cut(s)	153, 430, 634, 709, 716
HpyF10VI	GCNNNNNNNGC	8 cut(s)	117, 126, 135, 144, 190, 254, 412, 496
HpyF3I	CTNAG	2 cut(s)	161, 195
HpySE526I	ACGT	3 cut(s)	350, 479, 614
Hsp92I	GRCGYC	4 cut(s)	48, 325, 419, 479
Hsp92II	CATG	3 cut(s)	400, 434, 634
HspAI	GCGC	2 cut(s)	333, 647
Ksp22I	TGATCA	1 cut(s)	57
KspI	CCGCGG	1 cut(s)	378
Kzo9I	GATC	3 cut(s)	13, 57, 627
LmnI	GCTCC	2 cut(s)	33, 128
Lsp1109I	GCAGC	5 cut(s)	358, 415, 646, 693, 728
MaeII	ACGT	3 cut(s)	350, 479, 614
MaeIII	GTNAC	3 cut(s)	420, 466, 554
MalI	GATC	3 cut(s)	15, 59, 629
MbiI	CCGCTC	2 cut(s)	6, 123
MboI	GATC	3 cut(s)	13, 57, 627
MboII	GAAGA	2 cut(s)	336, 557
MhlI	GDGCHC	2 cut(s)	38, 696
MluCI	AATT	1 cut(s)	661
MlyI	GAGTC	3 cut(s)	197, 359, 445
MmeI	TCCRAC	1 cut(s)	387
MspA1I	CMGCKG	3 cut(s)	147, 377, 637
MspI	CCGG	6 cut(s)	108, 117, 126, 270, 357, 392
MspR9I	CCNGG	4 cut(s)	117, 218, 270, 501
Mva1269I	GAATGC	1 cut(s)	111
MvaI	CCWGG	2 cut(s)	218, 501
MvnI	CGCG	5 cut(s)	18, 333, 377, 452, 649
MwoI	GCNNNNNNNGC	8 cut(s)	117, 126, 135, 144, 190, 254, 412, 496
NciI	CCSGG	2 cut(s)	117, 270
NdeII	GATC	3 cut(s)	13, 57, 627
NlaIII	CATG	3 cut(s)	400, 434, 634
NlaIV	GGNNCC	5 cut(s)	35, 82, 95, 361, 694
NmeAIII	GCCGAG	2 cut(s)	347, 361
NmuCI	GTSAC	3 cut(s)	420, 466, 554
PcsI	WCGNNNNNNNCGW	1 cut(s)	611
PctI	GAATGC	1 cut(s)	111
PflFI	GACNNNGTC	1 cut(s)	490
PleI	GAGTC	3 cut(s)	197, 359, 444
PpsI	GAGTC	3 cut(s)	197, 359, 444
Psp6I	CCWGG	2 cut(s)	216, 499
PspFI	CCCAGC	1 cut(s)	72
PspGI	CCWGG	2 cut(s)	216, 499
PspN4I	GGNNCC	5 cut(s)	35, 82, 95, 361, 694
PspOMI	GGGCCC	1 cut(s)	692
PspPI	GGNCC	6 cut(s)	70, 80, 93, 246, 692, 693
PstI	CTGCAG	2 cut(s)	711, 718
PstNI	CAGNNNCTG	1 cut(s)	412
PsyI	GACNNNGTC	1 cut(s)	490
SacII	CCGCGG	1 cut(s)	378
Sau3AI	GATC	3 cut(s)	13, 57, 627
Sau96I	GGNCC	6 cut(s)	70, 80, 93, 246, 692, 693
SchI	GAGTC	3 cut(s)	197, 359, 445
ScrFI	CCNGG	4 cut(s)	117, 218, 270, 501
SduI	GDGCHC	2 cut(s)	38, 696
SetI	ASST	9 cut(s)	162, 353, 427, 482, 505, 525, 617, 657, 677
SfcI	CTRYAG	3 cut(s)	592, 707, 714
Sfr303I	CCGCGG	1 cut(s)	378
SgrBI	CCGCGG	1 cut(s)	378
SinI	GGWCC	1 cut(s)	93
Sse9I	AATT	1 cut(s)	661
StyD4I	CCNGG	4 cut(s)	115, 216, 268, 499
TaaI	ACNGT	4 cut(s)	172, 472, 554, 593
TaiI	ACGT	3 cut(s)	353, 482, 617
TaqI	TCGA	1 cut(s)	669
TasI	AATT	1 cut(s)	661
TauI	GCSGC	6 cut(s)	123, 141, 276, 319, 377, 499
TscAI	CASTG	2 cut(s)	305, 413
TseFI	GTSAC	3 cut(s)	420, 466, 554
TseI	GCWGC	5 cut(s)	371, 403, 634, 706, 716
Tsp45I	GTSAC	3 cut(s)	420, 466, 554
TspDTI	ATGAA	1 cut(s)	413
TspGWI	ACGGA	2 cut(s)	196, 620
TspRI	CASTG	2 cut(s)	305, 413
Tth111I	GACNNNGTC	1 cut(s)	490
VpaK11BI	GGWCC	1 cut(s)	93
ZraI	GACGTC	1 cut(s)	480

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.