Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0014803

Physical Location & Seq

Genomic Coordinates Forward (+)

22422903 .. 22423655

Gene Structure 753 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g20280.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGATGGGAGCGATGAGCGGTGAGGATCGCGTGACGGGGTCGTGGAACACGCAGGAGGACGCCACCCTGATCAAATTGGTGGCTCAGCACGGCCCCAGCAACTGGTCCCTCATCAGCACCGGCATTCCCGGCCGCTCCGGCAAGTCCTGCCGCCTCCGCTGGTGCAACCAGCTCTGCCCCACCGTCCAGCACAAGCCCTTTTCGCCTCAGGAGGACTCCATTATAATCCAGGCCCACGCCCTCCACGGAAACAAGTGGGCCACCATCGCCCGCCTCCTTCCCGGCCGCACCGACAACGCCATCAAGAACCACTGGAACTCCGCTCTGCGGCGGCGGCGGCGCCAACTCGCCGAGTTGTCTTCCTCGTCGTCCGGTTCCGACGCGGCCGCCGCGCTCGGGGAAGAGCCGGACTTGAAGAGACAGTGCCTGCGCGCGTCGCCTGAGCATGAGAGTTTGAAAGCGGGCGCAGGAGGGGAGGGAGTGATAGTCGAGACGTCGCTGACGCTGTCGCCGCCTGGTGAGAAGGCGGAGAAAGATGTCGCTGTGAAAAGTGAGGAGGAAGAACACGATCACGAAGCGGTGGACAATGACGATGATGTGGAGAAATGTGCGGTGGAGATGGAGGAGACGTGTTTGCTGACGATCATGCAGCGGATGATAGCGCAGGAAGTCAGGAATTACATCGACAGCTTACGGGGCGATGGTGGGCCTACATTTGGACCGCAGTCTGAAGCACATCAAAACGACGCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0006952 GO:0006970 GO:0008150 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009737 GO:0009739 GO:0009751 GO:0009753 GO:0009889 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010646 GO:0010647 GO:0010928 GO:0010929 GO:0014070 GO:0019219 GO:0019222 GO:0023051 GO:0023056 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0033993 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0046677 GO:0046686 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048869 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0097305 GO:0098542 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1903506 GO:2000022 GO:2000031 GO:2000112 GO:2001023 GO:2001038 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04151 ko05166 map04151 map05166

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

251

Amino Acids

27.27

Weight (kDa)

5.31

Isoelectric Point (pI)

57.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	13 - 58	2.2e-16	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	15 - 72	7.4e-15	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	65 - 108	4.4e-18	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	67 - 114	4.1e-09	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014803)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g24730
malus_domestica	MD01G1155100.v1.1 MD07G1224200.v1.1
prunus_persica	Prupe.2G252700_v2.0.a1
pyrus_communis	pycom01g17250 pycom07g20280
rosa_chinensis	RchiOBHm_Chr1g0370581
rosa_laevigata	RLG00000027025
rosa_multiflora	Rmu_co8167220.1_g000001 Rmu_sc0002021.1_g000013 Rmu_sc0033719.1_g000001
rosa_roxburghii	Rroxscaffold_4G00286410
rosa_rugosa	Rorug01G0357600
rosa_samantha	Rh1AG367100 Rh1BG330600 Rh1DG362100
rosa_wichuraiana	Rw1G032310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	224
AatII	GACGTC	1 cut(s)	497
AccB1I	GGYRCC	1 cut(s)	339
AccB7I	CCANNNNNTGG	1 cut(s)	102
AccBSI	CCGCTC	3 cut(s)	18, 135, 323
AccII	CGCG	6 cut(s)	30, 383, 392, 432, 434, 749
AclWI	GGATC	1 cut(s)	33
AcoI	YGGCCR	3 cut(s)	130, 283, 384
AcuI	CTGAAG	1 cut(s)	750
AcyI	GRCGYC	3 cut(s)	60, 340, 494
AfiI	CCNNNNNNNGG	4 cut(s)	102, 327, 396, 716
AflIII	ACRYGT	2 cut(s)	629, 747
AgsI	TTSAA	2 cut(s)	415, 457
AjiI	CACGTC	1 cut(s)	630
AjnI	CCWGG	2 cut(s)	228, 514
AluBI	AGCT	2 cut(s)	172, 690
AluI	AGCT	2 cut(s)	172, 690
Alw26I	GTCTC	3 cut(s)	412, 485, 620
AlwI	GGATC	1 cut(s)	33
AlwNI	CAGNNNCTG	2 cut(s)	102, 427
Ama87I	CYCGRG	1 cut(s)	395
AoxI	GGCC	7 cut(s)	91, 130, 231, 258, 283, 384, 707
ApeKI	GCWGC	1 cut(s)	649
AspLEI	GCGC	6 cut(s)	342, 394, 432, 434, 467, 664
AspS9I	GGNCC	6 cut(s)	92, 105, 232, 258, 707, 719
AsuC2I	CCSGG	2 cut(s)	129, 282
AsuHPI	GGTGA	2 cut(s)	32, 530
AvaI	CYCGRG	1 cut(s)	395
AvaII	GGWCC	2 cut(s)	105, 719
AxyI	CCTNAGG	1 cut(s)	207
BanI	GGYRCC	1 cut(s)	339
BbsI	GAAGAC	1 cut(s)	351
BbvI	GCAGC	1 cut(s)	661
BccI	CCATC	4 cut(s)	272, 308, 613, 695
BceAI	ACGGC	1 cut(s)	106
BciT130I	CCWGG	2 cut(s)	230, 516
BclI	TGATCA	1 cut(s)	69
BcnI	CCSGG	2 cut(s)	129, 282
BcoDI	GTCTC	3 cut(s)	412, 485, 620
BfoI	RGCGCY	1 cut(s)	343
BglI	GCCNNNNNGGC	1 cut(s)	138
BlpI	GCTNAGC	1 cut(s)	84
Bme1390I	CCNGG	4 cut(s)	129, 230, 282, 516
Bme18I	GGWCC	2 cut(s)	105, 719
BmeT110I	CYCGRG	1 cut(s)	395
BmgBI	CACGTC	1 cut(s)	630
BmgT120I	GGNCC	6 cut(s)	92, 105, 232, 258, 707, 719
BmiI	GGNNCC	4 cut(s)	94, 107, 341, 376
BmrFI	CCNGG	4 cut(s)	129, 230, 282, 516
BoxI	GACNNNNGTC	1 cut(s)	724
BpiI	GAAGAC	1 cut(s)	351
Bpu10I	CCTNAGC	1 cut(s)	441
Bpu1102I	GCTNAGC	1 cut(s)	84
BpuMI	CCSGG	2 cut(s)	129, 282
BsaHI	GRCGYC	3 cut(s)	60, 340, 494
BsaJI	CCNNGG	1 cut(s)	244
BsaWI	WCCGGW	1 cut(s)	371
BsaXI	ACNNNNNCTCC	6 cut(s)	302, 332, 471, 501, 614, 644
Bsc4I	CCNNNNNNNGG	4 cut(s)	102, 327, 396, 716
Bse118I	RCCGGY	1 cut(s)	119
Bse1I	ACTGG	2 cut(s)	107, 317
Bse21I	CCTNAGG	1 cut(s)	207
BseBI	CCWGG	2 cut(s)	230, 516
BseDI	CCNNGG	1 cut(s)	244
BseGI	GGATG	1 cut(s)	660
BseLI	CCNNNNNNNGG	4 cut(s)	102, 327, 396, 716
BseMII	CTCAG	3 cut(s)	98, 221, 432
BseNI	ACTGG	2 cut(s)	107, 317
BsePI	GCGCGC	1 cut(s)	430
BseRI	GAGGAG	2 cut(s)	569, 638
BseX3I	CGGCCG	3 cut(s)	130, 283, 384
BseXI	GCAGC	1 cut(s)	661
BseYI	CCCAGC	1 cut(s)	95
Bsh1236I	CGCG	6 cut(s)	30, 383, 392, 432, 434, 749
Bsh1285I	CGRYCG	3 cut(s)	133, 286, 387
BshFI	GGCC	7 cut(s)	93, 132, 233, 260, 285, 386, 709
BshNI	GGYRCC	1 cut(s)	339
BsiEI	CGRYCG	3 cut(s)	133, 286, 387
BsiHKCI	CYCGRG	1 cut(s)	395
BsiSI	CCGG	6 cut(s)	120, 129, 138, 282, 372, 407
BslFI	GGGAC	1 cut(s)	91
BslI	CCNNNNNNNGG	4 cut(s)	102, 327, 396, 716
BsmAI	GTCTC	3 cut(s)	412, 485, 620
BsmBI	CGTCTC	2 cut(s)	485, 620
BsmFI	GGGAC	1 cut(s)	91
BsmI	GAATGC	1 cut(s)	123
BsnI	GGCC	7 cut(s)	93, 132, 233, 260, 285, 386, 709
BsoBI	CYCGRG	1 cut(s)	395
Bsp143I	GATC	4 cut(s)	25, 69, 568, 642
Bsp1720I	GCTNAGC	1 cut(s)	84
BspANI	GGCC	7 cut(s)	93, 132, 233, 260, 285, 386, 709
BspCNI	CTCAG	3 cut(s)	97, 220, 433
BspFNI	CGCG	6 cut(s)	30, 383, 392, 432, 434, 749
BspLI	GGNNCC	4 cut(s)	94, 107, 341, 376
BspPI	GGATC	1 cut(s)	33
BspQI	GCTCTTC	1 cut(s)	396
BspT107I	GGYRCC	1 cut(s)	339
BsrBI	CCGCTC	3 cut(s)	18, 135, 323
BsrFI	RCCGGY	1 cut(s)	119
BsrI	ACTGG	2 cut(s)	107, 317
BssAI	RCCGGY	1 cut(s)	119
BssECI	CCNNGG	1 cut(s)	244
BssHII	GCGCGC	1 cut(s)	430
BssMI	GATC	4 cut(s)	25, 69, 568, 642
BssNI	GRCGYC	3 cut(s)	60, 340, 494
Bst2UI	CCWGG	2 cut(s)	230, 516
Bst4CI	ACNGT	2 cut(s)	184, 423
Bst6I	CTCTTC	2 cut(s)	396, 410
BstACI	GRCGYC	3 cut(s)	60, 340, 494
BstAPI	GCANNNNNTGC	1 cut(s)	147
BstC8I	GCNNGC	4 cut(s)	271, 428, 432, 463
BstDEI	CTNAG	3 cut(s)	84, 207, 441
BstDSI	CCRYGG	1 cut(s)	244
BstF5I	GGATG	1 cut(s)	660
BstFNI	CGCG	6 cut(s)	30, 383, 392, 432, 434, 749
BstH2I	RGCGCY	1 cut(s)	343
BstHHI	GCGC	6 cut(s)	342, 394, 432, 434, 467, 664
BstKTI	GATC	4 cut(s)	28, 72, 571, 645
BstMAI	GTCTC	3 cut(s)	412, 485, 620
BstMBI	GATC	4 cut(s)	25, 69, 568, 642
BstMCI	CGRYCG	3 cut(s)	133, 286, 387
BstNI	CCWGG	2 cut(s)	230, 516
BstPAI	GACNNNNGTC	1 cut(s)	724
BstSCI	CCNGG	4 cut(s)	127, 228, 280, 514
BstUI	CGCG	6 cut(s)	30, 383, 392, 432, 434, 749
BstV1I	GCAGC	1 cut(s)	661
BstV2I	GAAGAC	1 cut(s)	351
BstZI	CGGCCG	3 cut(s)	130, 283, 384
Bsu36I	CCTNAGG	1 cut(s)	207
BsuRI	GGCC	7 cut(s)	93, 132, 233, 260, 285, 386, 709
BtgI	CCRYGG	1 cut(s)	244
BtgZI	GCGATG	3 cut(s)	26, 250, 714
BtrI	CACGTC	1 cut(s)	630
BtsCI	GGATG	1 cut(s)	660
BtsIMutI	CAGTG	2 cut(s)	310, 428
Cac8I	GCNNGC	4 cut(s)	271, 428, 432, 463
CaiI	CAGNNNCTG	2 cut(s)	102, 427
CciNI	GCGGCCGC	1 cut(s)	384
CfoI	GCGC	6 cut(s)	342, 394, 432, 434, 467, 664
Cfr10I	RCCGGY	1 cut(s)	119
Cfr13I	GGNCC	6 cut(s)	92, 105, 232, 258, 707, 719
CseI	GACGC	4 cut(s)	68, 389, 423, 511
CviAII	CATG	2 cut(s)	446, 646
DdeI	CTNAG	3 cut(s)	84, 207, 441
DinI	GGCGCC	1 cut(s)	341
DpnI	GATC	4 cut(s)	27, 71, 570, 644
DpnII	GATC	4 cut(s)	25, 69, 568, 642
EaeI	YGGCCR	3 cut(s)	130, 283, 384
EagI	CGGCCG	3 cut(s)	130, 283, 384
Eam1104I	CTCTTC	2 cut(s)	396, 410
EarI	CTCTTC	2 cut(s)	396, 410
EciI	GGCGGA	1 cut(s)	542
EclXI	CGGCCG	3 cut(s)	130, 283, 384
Eco47I	GGWCC	2 cut(s)	105, 719
Eco52I	CGGCCG	3 cut(s)	130, 283, 384
Eco57I	CTGAAG	1 cut(s)	750
Eco81I	CCTNAGG	1 cut(s)	207
Eco88I	CYCGRG	1 cut(s)	395
EcoRII	CCWGG	2 cut(s)	228, 514
EgeI	GGCGCC	1 cut(s)	341
EheI	GGCGCC	1 cut(s)	341
Esp3I	CGTCTC	2 cut(s)	485, 620
FaeI	CATG	2 cut(s)	449, 649
FaiI	YATR	3 cut(s)	224, 447, 647
FaqI	GGGAC	1 cut(s)	91
FatI	CATG	2 cut(s)	445, 645
FauI	CCCGC	2 cut(s)	278, 454
FbaI	TGATCA	1 cut(s)	69
FokI	GGATG	1 cut(s)	667
GlaI	GCGC	6 cut(s)	341, 393, 431, 433, 466, 663
GsaI	CCCAGC	1 cut(s)	99
HaeII	RGCGCY	1 cut(s)	343
HaeIII	GGCC	7 cut(s)	93, 132, 233, 260, 285, 386, 709
HapII	CCGG	6 cut(s)	120, 129, 138, 282, 372, 407
HgaI	GACGC	4 cut(s)	68, 389, 423, 511
HhaI	GCGC	6 cut(s)	342, 394, 432, 434, 467, 664
Hin1I	GRCGYC	3 cut(s)	60, 340, 494
Hin1II	CATG	2 cut(s)	449, 649
Hin6I	GCGC	6 cut(s)	340, 392, 430, 432, 465, 662
HinP1I	GCGC	6 cut(s)	340, 392, 430, 432, 465, 662
HinfI	GANTC	1 cut(s)	215
HpaII	CCGG	6 cut(s)	120, 129, 138, 282, 372, 407
HphI	GGTGA	2 cut(s)	32, 530
Hpy166II	GTNNAC	1 cut(s)	583
Hpy188I	TCNGA	2 cut(s)	379, 730
Hpy188III	TCNNGA	5 cut(s)	209, 304, 490, 572, 673
Hpy8I	GTNNAC	1 cut(s)	583
Hpy99I	CGWCG	5 cut(s)	370, 383, 439, 499, 749
HpyAV	CCTTC	2 cut(s)	287, 517
HpyCH4III	ACNGT	2 cut(s)	184, 423
HpyCH4IV	ACGT	2 cut(s)	494, 629
HpyCH4V	TGCA	2 cut(s)	165, 649
HpyF3I	CTNAG	3 cut(s)	84, 207, 441
HpySE526I	ACGT	2 cut(s)	494, 629
Hsp92I	GRCGYC	3 cut(s)	60, 340, 494
Hsp92II	CATG	2 cut(s)	449, 649
HspAI	GCGC	6 cut(s)	340, 392, 430, 432, 465, 662
KasI	GGCGCC	1 cut(s)	339
Ksp22I	TGATCA	1 cut(s)	69
Kzo9I	GATC	4 cut(s)	25, 69, 568, 642
LguI	GCTCTTC	1 cut(s)	396
LmnI	GCTCC	2 cut(s)	8, 140
Lsp1109I	GCAGC	1 cut(s)	661
MaeII	ACGT	2 cut(s)	494, 629
MaeIII	GTNAC	1 cut(s)	31
MalI	GATC	4 cut(s)	27, 71, 570, 644
MbiI	CCGCTC	3 cut(s)	18, 135, 323
MboI	GATC	4 cut(s)	25, 69, 568, 642
MboII	GAAGA	4 cut(s)	351, 413, 427, 572
MluCI	AATT	2 cut(s)	74, 676
MluI	ACGCGT	1 cut(s)	747
Mly113I	GGCGCC	1 cut(s)	340
MlyI	GAGTC	1 cut(s)	209
MmeI	TCCRAC	1 cut(s)	402
MspA1I	CMGCKG	2 cut(s)	159, 652
MspI	CCGG	6 cut(s)	120, 129, 138, 282, 372, 407
MspR9I	CCNGG	4 cut(s)	129, 230, 282, 516
Mva1269I	GAATGC	1 cut(s)	123
MvaI	CCWGG	2 cut(s)	230, 516
MvnI	CGCG	6 cut(s)	30, 383, 392, 432, 434, 749
NarI	GGCGCC	1 cut(s)	340
NciI	CCSGG	2 cut(s)	129, 282
NdeII	GATC	4 cut(s)	25, 69, 568, 642
NlaIII	CATG	2 cut(s)	449, 649
NlaIV	GGNNCC	4 cut(s)	94, 107, 341, 376
NmeAIII	GCCGAG	1 cut(s)	376
NmuCI	GTSAC	1 cut(s)	31
NotI	GCGGCCGC	1 cut(s)	384
PauI	GCGCGC	1 cut(s)	430
PciSI	GCTCTTC	1 cut(s)	396
PctI	GAATGC	1 cut(s)	123
PflFI	GACNNNGTC	2 cut(s)	37, 505
PflMI	CCANNNNNTGG	1 cut(s)	102
PleI	GAGTC	1 cut(s)	209
PluTI	GGCGCC	1 cut(s)	343
PpsI	GAGTC	1 cut(s)	209
PshAI	GACNNNNGTC	1 cut(s)	724
PsiI	TTATAA	1 cut(s)	224
Psp6I	CCWGG	2 cut(s)	228, 514
PspFI	CCCAGC	1 cut(s)	95
PspGI	CCWGG	2 cut(s)	228, 514
PspN4I	GGNNCC	4 cut(s)	94, 107, 341, 376
PspPI	GGNCC	6 cut(s)	92, 105, 232, 258, 707, 719
PstNI	CAGNNNCTG	2 cut(s)	102, 427
PsyI	GACNNNGTC	2 cut(s)	37, 505
PteI	GCGCGC	1 cut(s)	430
SapI	GCTCTTC	1 cut(s)	396
Sau3AI	GATC	4 cut(s)	25, 69, 568, 642
Sau96I	GGNCC	6 cut(s)	92, 105, 232, 258, 707, 719
SchI	GAGTC	1 cut(s)	209
ScrFI	CCNGG	4 cut(s)	129, 230, 282, 516
SetI	ASST	4 cut(s)	174, 497, 632, 692
SfoI	GGCGCC	1 cut(s)	341
SinI	GGWCC	2 cut(s)	105, 719
Sse9I	AATT	2 cut(s)	74, 676
SspDI	GGCGCC	1 cut(s)	339
StyD4I	CCNGG	4 cut(s)	127, 228, 280, 514
TaaI	ACNGT	2 cut(s)	184, 423
TaiI	ACGT	2 cut(s)	497, 632
TaqI	TCGA	2 cut(s)	489, 684
TasI	AATT	2 cut(s)	74, 676
TscAI	CASTG	2 cut(s)	317, 428
TseFI	GTSAC	1 cut(s)	31
TseI	GCWGC	1 cut(s)	649
Tsp45I	GTSAC	1 cut(s)	31
TspGWI	ACGGA	1 cut(s)	261
TspRI	CASTG	2 cut(s)	317, 428
Tth111I	GACNNNGTC	2 cut(s)	37, 505
Van91I	CCANNNNNTGG	1 cut(s)	102
VpaK11BI	GGWCC	2 cut(s)	105, 719
ZraI	GACGTC	1 cut(s)	495

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.