RLG00000027025
MYB Family

Transcription factor

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
Physical Location & Seq
Reverse (-)
7758791 .. 7759561
771 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000027025

Sequence Viewer

Length: 771 bp
ATGAGCGGCGGTGGTGATAATAGAGTGAAGGGGTCGTGGAGTCCTCAGGAGGACGCAACGCTGATCAAGCTGGTGGAGGAGCACGGCCCGCGCAACTGGTCGTTGATCAGCTCCGGCATTCCCGGCCGGTCCGGCAAGTCTTGTAGGCTGAGGTGGTGCAACCAGCTCAGCCCCGACGTGCAGCACAAGCCGTTCACACCGGCCGAGGACGCCTCGATCATCCGGGCACACGCGCTCCACGGCAACAAGTGGGCCACCATCGCCCGGCTCCTCCCCGGCCGCACCGACAATGCCATCAAGAACCACTGGAACTCCACGCTCCGGCGGCGGAGGCTGGCCGAGTCGAGCTCGGCCTCTTCCGAGTCCAACTCGGCCGCGTTGAAGCGGTTGATTGGCGCCACGTCGGACGACCCGGAGATGAAGCGGCAGTGCTTGCGTGGGGCGTCGGTGGAGGAGGATAGTTTCAAAGCGGTTGCGGCGGGAGTGGAGGGCGTGCTGACGTCACTGACTCTGTCGCCGCCTGGGGAGAAAGTGGAAAACGAGGTCGTTTTGAAGAGTGAGCAGGTGGGGGAGGAGGACACTGATGATCATCAAGCGGAGGCGGTGGATGACGAGGAGCAATGTACGGTGGAGATGGAGGAGACGTGTCTGATGACGATGATGCAGCGGATGATAGCCCAGGAGGTGAGGAACTACATCGAGAGCTTACGGGCCGAGAATGGGCTTGCATTTGGGCTTCAGTCGACGGTCCAAAAGGATCCAAAATGTTGA

Protein Analysis

257

Amino Acids

28.13

Weight (kDa)

5.38

Isoelectric Point (pI)

58.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 10 - 56 1.6e-18 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 13 - 71 7.3e-17 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 63 - 106 3.3e-17 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 65 - 110 3e-08 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0014803)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 553
AatII GACGTC 1 cut(s) 503
Acc36I ACCTGC 1 cut(s) 553
AccB1I GGYRCC 1 cut(s) 395
AccBSI CCGCTC 1 cut(s) 6
AccI GTMKAC 1 cut(s) 743
AccII CGCG 3 cut(s) 91, 233, 377
AclWI GGATC 2 cut(s) 752, 765
AcoI YGGCCR 5 cut(s) 124, 201, 277, 336, 372
AcuI CTGAAG 1 cut(s) 722
AcyI GRCGYC 4 cut(s) 210, 396, 443, 500
AfaI GTAC 1 cut(s) 625
AfiI CCNNNNNNNGG 3 cut(s) 264, 321, 720
AflIII ACRYGT 1 cut(s) 644
AgsI TTSAA 3 cut(s) 382, 466, 553
AjiI CACGTC 3 cut(s) 178, 402, 645
AjnI CCWGG 2 cut(s) 520, 678
AluBI AGCT 5 cut(s) 70, 111, 166, 348, 705
AluI AGCT 5 cut(s) 70, 111, 166, 348, 705
Alw21I GWGCWC 2 cut(s) 84, 350
Alw26I GTCTC 1 cut(s) 635
AlwI GGATC 2 cut(s) 752, 765
AoxI GGCC 9 cut(s) 85, 124, 201, 252, 277, 336, 351, 372, 711
ApeKI GCWGC 2 cut(s) 181, 664
AspLEI GCGC 3 cut(s) 93, 235, 398
AspS9I GGNCC 5 cut(s) 86, 129, 252, 711, 748
AsuC2I CCSGG 5 cut(s) 123, 224, 265, 276, 413
AsuHPI GGTGA 2 cut(s) 26, 697
AvaII GGWCC 2 cut(s) 129, 748
AxyI CCTNAGG 1 cut(s) 45
BaeGI GKGCMC 1 cut(s) 229
BamHI GGATCC 1 cut(s) 757
BanI GGYRCC 1 cut(s) 395
BanII GRGCYC 1 cut(s) 350
Bbv12I GWGCWC 2 cut(s) 84, 350
BbvCI CCTCAGC 1 cut(s) 149
BbvI GCAGC 2 cut(s) 193, 676
BccI CCATC 3 cut(s) 266, 302, 628
BceAI ACGGC 3 cut(s) 100, 175, 256
BciT130I CCWGG 2 cut(s) 522, 680
BclI TGATCA 3 cut(s) 63, 105, 586
BcnI CCSGG 5 cut(s) 123, 224, 265, 276, 413
BcoDI GTCTC 1 cut(s) 635
BfoI RGCGCY 1 cut(s) 399
BfuAI ACCTGC 1 cut(s) 553
BglI GCCNNNNNGGC 1 cut(s) 132
BisI GCNGC 9 cut(s) 7, 182, 280, 326, 375, 425, 477, 518, 665
BlpI GCTNAGC 1 cut(s) 167
BlsI GCNGC 9 cut(s) 8, 183, 281, 327, 376, 426, 478, 519, 666
Bme1390I CCNGG 7 cut(s) 123, 224, 265, 276, 413, 522, 680
Bme18I GGWCC 2 cut(s) 129, 748
BmgBI CACGTC 3 cut(s) 178, 402, 645
BmgT120I GGNCC 5 cut(s) 86, 129, 252, 711, 748
BmiI GGNNCC 3 cut(s) 269, 397, 759
BmrFI CCNGG 7 cut(s) 123, 224, 265, 276, 413, 522, 680
BmsI GCATC 1 cut(s) 651
BplI GAGNNNNNCTC 6 cut(s) 197, 229, 332, 364, 353, 385
Bpu10I CCTNAGC 1 cut(s) 149
Bpu1102I GCTNAGC 1 cut(s) 167
BpuMI CCSGG 5 cut(s) 123, 224, 265, 276, 413
BsaBI GATNNNNATC 1 cut(s) 588
BsaHI GRCGYC 4 cut(s) 210, 396, 443, 500
BsaJI CCNNGG 5 cut(s) 204, 238, 274, 521, 678
BsaXI ACNNNNNCTCC 6 cut(s) 219, 249, 296, 326, 629, 659
Bsc4I CCNNNNNNNGG 3 cut(s) 264, 321, 720
Bse118I RCCGGY 2 cut(s) 126, 199
Bse1I ACTGG 2 cut(s) 101, 311
Bse21I CCTNAGG 1 cut(s) 45
Bse3DI GCAATG 1 cut(s) 626
Bse8I GATNNNNATC 1 cut(s) 588
BseBI CCWGG 2 cut(s) 522, 680
BseDI CCNNGG 5 cut(s) 204, 238, 274, 521, 678
BseGI GGATG 3 cut(s) 219, 613, 675
BseJI GATNNNNATC 1 cut(s) 588
BseLI CCNNNNNNNGG 3 cut(s) 264, 321, 720
BseMI GCAATG 1 cut(s) 626
BseMII CTCAG 3 cut(s) 59, 140, 181
BseNI ACTGG 2 cut(s) 101, 311
BseRI GAGGAG 6 cut(s) 92, 260, 467, 587, 629, 653
BseSI GKGCMC 1 cut(s) 229
BseX3I CGGCCG 4 cut(s) 124, 201, 277, 372
BseXI GCAGC 2 cut(s) 193, 676
BsgI GTGCAG 1 cut(s) 200
Bsh1236I CGCG 3 cut(s) 91, 233, 377
Bsh1285I CGRYCG 4 cut(s) 127, 204, 280, 375
BshFI GGCC 9 cut(s) 87, 126, 203, 254, 279, 338, 353, 374, 713
BshNI GGYRCC 1 cut(s) 395
BsiEI CGRYCG 4 cut(s) 127, 204, 280, 375
BsiHKAI GWGCWC 2 cut(s) 84, 350
BslI CCNNNNNNNGG 3 cut(s) 264, 321, 720
BsmAI GTCTC 1 cut(s) 635
BsmBI CGTCTC 1 cut(s) 635
BsmI GAATGC 1 cut(s) 117
BsnI GGCC 9 cut(s) 87, 126, 203, 254, 279, 338, 353, 374, 713
Bsp1286I GDGCHC 3 cut(s) 84, 229, 350
Bsp143I GATC 5 cut(s) 63, 105, 216, 586, 757
Bsp1720I GCTNAGC 1 cut(s) 167
BspANI GGCC 9 cut(s) 87, 126, 203, 254, 279, 338, 353, 374, 713
BspCNI CTCAG 3 cut(s) 58, 141, 180
BspFNI CGCG 3 cut(s) 91, 233, 377
BspLI GGNNCC 3 cut(s) 269, 397, 759
BspMI ACCTGC 1 cut(s) 553
BspPI GGATC 2 cut(s) 752, 765
BspT107I GGYRCC 1 cut(s) 395
BsrBI CCGCTC 1 cut(s) 6
BsrDI GCAATG 1 cut(s) 626
BsrFI RCCGGY 2 cut(s) 126, 199
BsrI ACTGG 2 cut(s) 101, 311
BssAI RCCGGY 2 cut(s) 126, 199
BssECI CCNNGG 5 cut(s) 204, 238, 274, 521, 678
BssMI GATC 5 cut(s) 63, 105, 216, 586, 757
BssNI GRCGYC 4 cut(s) 210, 396, 443, 500
Bst2UI CCWGG 2 cut(s) 522, 680
Bst4CI ACNGT 2 cut(s) 628, 748
Bst6I CTCTTC 2 cut(s) 361, 548
BstACI GRCGYC 4 cut(s) 210, 396, 443, 500
BstAPI GCANNNNNTGC 1 cut(s) 433
BstC8I GCNNGC 5 cut(s) 89, 336, 434, 494, 726
BstDEI CTNAG 3 cut(s) 45, 149, 167
BstDSI CCRYGG 1 cut(s) 238
BstF5I GGATG 3 cut(s) 219, 613, 675
BstFNI CGCG 3 cut(s) 91, 233, 377
BstH2I RGCGCY 1 cut(s) 399
BstHHI GCGC 3 cut(s) 93, 235, 398
BstKTI GATC 5 cut(s) 66, 108, 219, 589, 760
BstMAI GTCTC 1 cut(s) 635
BstMBI GATC 5 cut(s) 63, 105, 216, 586, 757
BstMCI CGRYCG 4 cut(s) 127, 204, 280, 375
BstNI CCWGG 2 cut(s) 522, 680
BstSCI CCNGG 7 cut(s) 121, 222, 263, 274, 411, 520, 678
BstSLI GKGCMC 1 cut(s) 229
BstUI CGCG 3 cut(s) 91, 233, 377
BstV1I GCAGC 2 cut(s) 193, 676
BstX2I RGATCY 1 cut(s) 757
BstYI RGATCY 1 cut(s) 757
BstZI CGGCCG 4 cut(s) 124, 201, 277, 372
Bsu36I CCTNAGG 1 cut(s) 45
BsuRI GGCC 9 cut(s) 87, 126, 203, 254, 279, 338, 353, 374, 713
BtgI CCRYGG 1 cut(s) 238
BtgZI GCGATG 1 cut(s) 244
BtrI CACGTC 3 cut(s) 178, 402, 645
BtsCI GGATG 3 cut(s) 219, 613, 675
BtsI GCAGTG 1 cut(s) 434
BtsIMutI CAGTG 4 cut(s) 304, 434, 503, 579
BveI ACCTGC 1 cut(s) 553
Cac8I GCNNGC 5 cut(s) 89, 336, 434, 494, 726
CfoI GCGC 3 cut(s) 93, 235, 398
Cfr10I RCCGGY 2 cut(s) 126, 199
Cfr13I GGNCC 5 cut(s) 86, 129, 252, 711, 748
CpoI CGGWCCG 1 cut(s) 129
CseI GACGC 3 cut(s) 62, 218, 432
Csp6I GTAC 1 cut(s) 624
CspI CGGWCCG 1 cut(s) 129
CviQI GTAC 1 cut(s) 624
DdeI CTNAG 3 cut(s) 45, 149, 167
DinI GGCGCC 1 cut(s) 397
DpnI GATC 5 cut(s) 65, 107, 218, 588, 759
DpnII GATC 5 cut(s) 63, 105, 216, 586, 757
EaeI YGGCCR 5 cut(s) 124, 201, 277, 336, 372
EagI CGGCCG 4 cut(s) 124, 201, 277, 372
Eam1104I CTCTTC 2 cut(s) 361, 548
EarI CTCTTC 2 cut(s) 361, 548
EciI GGCGGA 1 cut(s) 343
Ecl136II GAGCTC 1 cut(s) 348
EclXI CGGCCG 4 cut(s) 124, 201, 277, 372
Eco24I GRGCYC 1 cut(s) 350
Eco47I GGWCC 2 cut(s) 129, 748
Eco52I CGGCCG 4 cut(s) 124, 201, 277, 372
Eco53kI GAGCTC 1 cut(s) 348
Eco57I CTGAAG 1 cut(s) 722
Eco81I CCTNAGG 1 cut(s) 45
EcoICRI GAGCTC 1 cut(s) 348
EcoRII CCWGG 2 cut(s) 520, 678
EcoT38I GRGCYC 1 cut(s) 350
EgeI GGCGCC 1 cut(s) 397
EheI GGCGCC 1 cut(s) 397
Esp3I CGTCTC 1 cut(s) 635
FauI CCCGC 2 cut(s) 96, 472
FbaI TGATCA 3 cut(s) 63, 105, 586
FblI GTMKAC 1 cut(s) 743
Fnu4HI GCNGC 9 cut(s) 7, 182, 280, 326, 375, 425, 477, 518, 665
FokI GGATG 3 cut(s) 206, 620, 682
FriOI GRGCYC 1 cut(s) 350
Fsp4HI GCNGC 9 cut(s) 7, 182, 280, 326, 375, 425, 477, 518, 665
GlaI GCGC 3 cut(s) 92, 234, 397
GluI GCNGC 9 cut(s) 7, 182, 280, 326, 375, 425, 477, 518, 665
HaeII RGCGCY 1 cut(s) 399
HaeIII GGCC 9 cut(s) 87, 126, 203, 254, 279, 338, 353, 374, 713
HgaI GACGC 3 cut(s) 62, 218, 432
HhaI GCGC 3 cut(s) 93, 235, 398
Hin1I GRCGYC 4 cut(s) 210, 396, 443, 500
Hin6I GCGC 3 cut(s) 91, 233, 396
HinP1I GCGC 3 cut(s) 91, 233, 396
HincII GTYRAC 1 cut(s) 744
HindII GTYRAC 1 cut(s) 744
HinfI GANTC 4 cut(s) 40, 341, 362, 508
HphI GGTGA 2 cut(s) 26, 697
Hpy166II GTNNAC 2 cut(s) 195, 744
Hpy188I TCNGA 3 cut(s) 361, 406, 651
Hpy188III TCNNGA 3 cut(s) 47, 298, 700
Hpy8I GTNNAC 2 cut(s) 195, 744
Hpy99I CGWCG 4 cut(s) 179, 406, 448, 748
HpyAV CCTTC 1 cut(s) 22
HpyCH4III ACNGT 2 cut(s) 628, 748
HpyCH4IV ACGT 4 cut(s) 177, 401, 500, 644
HpyCH4V TGCA 4 cut(s) 159, 181, 664, 728
HpyF3I CTNAG 3 cut(s) 45, 149, 167
HpySE526I ACGT 4 cut(s) 177, 401, 500, 644
Hsp92I GRCGYC 4 cut(s) 210, 396, 443, 500
HspAI GCGC 3 cut(s) 91, 233, 396
KasI GGCGCC 1 cut(s) 395
Ksp22I TGATCA 3 cut(s) 63, 105, 586
Kzo9I GATC 5 cut(s) 63, 105, 216, 586, 757
LmnI GCTCC 6 cut(s) 79, 116, 240, 273, 324, 616
Lsp1109I GCAGC 2 cut(s) 193, 676
LweI GCATC 1 cut(s) 651
MaeII ACGT 4 cut(s) 177, 401, 500, 644
MaeIII GTNAC 1 cut(s) 501
MalI GATC 5 cut(s) 65, 107, 218, 588, 759
MbiI CCGCTC 1 cut(s) 6
MboI GATC 5 cut(s) 63, 105, 216, 586, 757
MboII GAAGA 2 cut(s) 348, 565
MflI RGATCY 1 cut(s) 757
MhlI GDGCHC 3 cut(s) 84, 229, 350
Mly113I GGCGCC 1 cut(s) 396
MlyI GAGTC 4 cut(s) 49, 350, 371, 502
MmeI TCCRAC 2 cut(s) 384, 390
MspA1I CMGCKG 1 cut(s) 667
MspR9I CCNGG 7 cut(s) 123, 224, 265, 276, 413, 522, 680
Mva1269I GAATGC 1 cut(s) 117
MvaI CCWGG 2 cut(s) 522, 680
MvnI CGCG 3 cut(s) 91, 233, 377
NarI GGCGCC 1 cut(s) 396
NciI CCSGG 5 cut(s) 123, 224, 265, 276, 413
NdeII GATC 5 cut(s) 63, 105, 216, 586, 757
NlaIV GGNNCC 3 cut(s) 269, 397, 759
NmeAIII GCCGAG 5 cut(s) 229, 329, 350, 364, 739
NmuCI GTSAC 1 cut(s) 501
PaqCI CACCTGC 1 cut(s) 553
PctI GAATGC 1 cut(s) 117
PflFI GACNNNGTC 1 cut(s) 511
PkrI GCNGC 9 cut(s) 8, 183, 281, 327, 376, 426, 478, 519, 666
PleI GAGTC 4 cut(s) 48, 349, 370, 502
PluTI GGCGCC 1 cut(s) 399
PpsI GAGTC 4 cut(s) 48, 349, 370, 502
Psp124BI GAGCTC 1 cut(s) 350
Psp6I CCWGG 2 cut(s) 520, 678
PspGI CCWGG 2 cut(s) 520, 678
PspN4I GGNNCC 3 cut(s) 269, 397, 759
PspPI GGNCC 5 cut(s) 86, 129, 252, 711, 748
PsuI RGATCY 1 cut(s) 757
PsyI GACNNNGTC 1 cut(s) 511
RsaI GTAC 1 cut(s) 625
RsaNI GTAC 1 cut(s) 624
Rsr2I CGGWCCG 1 cut(s) 129
RsrII CGGWCCG 1 cut(s) 129
SacI GAGCTC 1 cut(s) 350
SalI GTCGAC 1 cut(s) 742
SatI GCNGC 9 cut(s) 7, 182, 280, 326, 375, 425, 477, 518, 665
Sau3AI GATC 5 cut(s) 63, 105, 216, 586, 757
Sau96I GGNCC 5 cut(s) 86, 129, 252, 711, 748
SchI GAGTC 4 cut(s) 49, 350, 371, 502
ScrFI CCNGG 7 cut(s) 123, 224, 265, 276, 413, 522, 680
SduI GDGCHC 3 cut(s) 84, 229, 350
SfaNI GCATC 1 cut(s) 651
SfoI GGCGCC 1 cut(s) 397
SinI GGWCC 2 cut(s) 129, 748
SspDI GGCGCC 1 cut(s) 395
SstI GAGCTC 1 cut(s) 350
StyD4I CCNGG 7 cut(s) 121, 222, 263, 274, 411, 520, 678
TaaI ACNGT 2 cut(s) 628, 748
TaiI ACGT 4 cut(s) 180, 404, 503, 647
TaqI TCGA 4 cut(s) 215, 344, 699, 743
TauI GCSGC 7 cut(s) 9, 282, 328, 377, 427, 479, 520
TscAI CASTG 4 cut(s) 311, 434, 510, 586
TseFI GTSAC 1 cut(s) 501
TseI GCWGC 2 cut(s) 181, 664
Tsp45I GTSAC 1 cut(s) 501
TspDTI ATGAA 1 cut(s) 434
TspRI CASTG 4 cut(s) 311, 434, 510, 586
Tth111I GACNNNGTC 1 cut(s) 511
VpaK11BI GGWCC 2 cut(s) 129, 748
XmiI GTMKAC 1 cut(s) 743
ZraI GACGTC 1 cut(s) 501
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.