Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8167220.1

Orthogroup ID

OG0014803

Physical Location & Seq

Genomic Coordinates Reverse (-)

139 .. 669

Gene Structure 531 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8167220.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ctgcacggcaacaagtgggccaccatcgcccggctcctccccggccgcaccgacaatgccatcaagaaccactggaactccacgctccggcggcggaggctggccgagtcgagctcggcctcttccgagttgaagcggttgattggcgccacgtcggacgacccggagacgaagcggcagtgcttgcgtggggcgtcggcggaggaggatagtttcaaagcggttgcggcgggagtagagggcgtgctgacgtcactgacgctgtcgccgcctgggcagaaagtggaaaacgaggtcgttttgaagagtgaggaggtgggggaggaggaggaagaggacaatgatgatcaccaagaggaggcggtggatgacgaggagaaatgtacggtggagatggaggagacgtgtctgatgacgatgatgcagcggatgatagcccaggaggtgaggaactacatcgagagcttacgggccgagaatgggctagtatttgggctacagtcgacggtccaaaatgatcggaaatgttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0006952 GO:0006970 GO:0008150 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009737 GO:0009739 GO:0009751 GO:0009753 GO:0009889 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010646 GO:0010647 GO:0010928 GO:0010929 GO:0014070 GO:0019219 GO:0019222 GO:0023051 GO:0023056 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0033993 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0046677 GO:0046686 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048869 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0097305 GO:0098542 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1903506 GO:2000022 GO:2000031 GO:2000112 GO:2001023 GO:2001038 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04151 ko05166 map04151 map05166

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

176

Amino Acids

19.67

Weight (kDa)

4.74

Isoelectric Point (pI)

66.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014803)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g24730
malus_domestica	MD01G1155100.v1.1 MD07G1224200.v1.1
prunus_persica	Prupe.2G252700_v2.0.a1
pyrus_communis	pycom01g17250 pycom07g20280
rosa_chinensis	RchiOBHm_Chr1g0370581
rosa_laevigata	RLG00000027025
rosa_multiflora	Rmu_co8167220.1_g000001 Rmu_sc0002021.1_g000013 Rmu_sc0033719.1_g000001
rosa_roxburghii	Rroxscaffold_4G00286410
rosa_rugosa	Rorug01G0357600
rosa_samantha	Rh1AG367100 Rh1BG330600 Rh1DG362100
rosa_wichuraiana	Rw1G032310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	254
AccB1I	GGYRCC	1 cut(s)	146
AccI	GTMKAC	1 cut(s)	503
AcoI	YGGCCR	2 cut(s)	43, 102
AcyI	GRCGYC	3 cut(s)	147, 194, 251
AfaI	GTAC	1 cut(s)	385
AfiI	CCNNNNNNNGG	4 cut(s)	30, 87, 358, 480
AflIII	ACRYGT	1 cut(s)	404
AgsI	TTSAA	3 cut(s)	133, 217, 304
AjiI	CACGTC	2 cut(s)	153, 405
AjnI	CCWGG	2 cut(s)	271, 438
AluBI	AGCT	2 cut(s)	114, 465
AluI	AGCT	2 cut(s)	114, 465
Alw21I	GWGCWC	1 cut(s)	116
Alw26I	GTCTC	2 cut(s)	161, 395
AoxI	GGCC	5 cut(s)	18, 43, 102, 117, 471
ApeKI	GCWGC	1 cut(s)	424
AspLEI	GCGC	1 cut(s)	149
AspS9I	GGNCC	3 cut(s)	18, 471, 508
AsuC2I	CCSGG	3 cut(s)	31, 42, 164
AsuHPI	GGTGA	2 cut(s)	341, 457
AvaII	GGWCC	1 cut(s)	508
BanI	GGYRCC	1 cut(s)	146
BanII	GRGCYC	1 cut(s)	116
Bbv12I	GWGCWC	1 cut(s)	116
BbvI	GCAGC	1 cut(s)	436
BccI	CCATC	3 cut(s)	32, 68, 388
BceAI	ACGGC	1 cut(s)	22
BciT130I	CCWGG	2 cut(s)	273, 440
BclI	TGATCA	1 cut(s)	346
BcnI	CCSGG	3 cut(s)	31, 42, 164
BcoDI	GTCTC	2 cut(s)	161, 395
BfaI	CTAG	1 cut(s)	485
BfmI	CTRYAG	1 cut(s)	497
BfoI	RGCGCY	1 cut(s)	150
BglI	GCCNNNNNGGC	1 cut(s)	274
BisI	GCNGC	6 cut(s)	46, 92, 176, 228, 269, 425
BlsI	GCNGC	6 cut(s)	47, 93, 177, 229, 270, 426
Bme1390I	CCNGG	5 cut(s)	31, 42, 164, 273, 440
Bme18I	GGWCC	1 cut(s)	508
BmgBI	CACGTC	2 cut(s)	153, 405
BmgT120I	GGNCC	3 cut(s)	18, 471, 508
BmiI	GGNNCC	2 cut(s)	35, 148
BmrFI	CCNGG	5 cut(s)	31, 42, 164, 273, 440
BmsI	GCATC	1 cut(s)	411
BplI	GAGNNNNNCTC	2 cut(s)	98, 130
BpuMI	CCSGG	3 cut(s)	31, 42, 164
BsaHI	GRCGYC	3 cut(s)	147, 194, 251
BsaJI	CCNNGG	3 cut(s)	40, 272, 438
BsaXI	ACNNNNNCTCC	4 cut(s)	62, 92, 389, 419
Bsc4I	CCNNNNNNNGG	4 cut(s)	30, 87, 358, 480
Bse1I	ACTGG	1 cut(s)	77
BseBI	CCWGG	2 cut(s)	273, 440
BseDI	CCNNGG	3 cut(s)	40, 272, 438
BseGI	GGATG	2 cut(s)	373, 435
BseLI	CCNNNNNNNGG	4 cut(s)	30, 87, 358, 480
BseNI	ACTGG	1 cut(s)	77
BseRI	GAGGAG	8 cut(s)	26, 218, 326, 338, 341, 371, 389, 413
BseX3I	CGGCCG	1 cut(s)	43
BseXI	GCAGC	1 cut(s)	436
Bsh1285I	CGRYCG	1 cut(s)	46
BshFI	GGCC	5 cut(s)	20, 45, 104, 119, 473
BshNI	GGYRCC	1 cut(s)	146
BsiEI	CGRYCG	1 cut(s)	46
BsiHKAI	GWGCWC	1 cut(s)	116
BsiSI	CCGG	4 cut(s)	31, 42, 88, 164
BslI	CCNNNNNNNGG	4 cut(s)	30, 87, 358, 480
BsmAI	GTCTC	2 cut(s)	161, 395
BsmBI	CGTCTC	2 cut(s)	161, 395
BsnI	GGCC	5 cut(s)	20, 45, 104, 119, 473
Bsp1286I	GDGCHC	1 cut(s)	116
Bsp143I	GATC	2 cut(s)	346, 517
BspANI	GGCC	5 cut(s)	20, 45, 104, 119, 473
BspLI	GGNNCC	2 cut(s)	35, 148
BspT107I	GGYRCC	1 cut(s)	146
BsrI	ACTGG	1 cut(s)	77
BssECI	CCNNGG	3 cut(s)	40, 272, 438
BssMI	GATC	2 cut(s)	346, 517
BssNI	GRCGYC	3 cut(s)	147, 194, 251
Bst2UI	CCWGG	2 cut(s)	273, 440
Bst4CI	ACNGT	3 cut(s)	388, 501, 508
Bst6I	CTCTTC	3 cut(s)	127, 299, 327
BstACI	GRCGYC	3 cut(s)	147, 194, 251
BstAPI	GCANNNNNTGC	1 cut(s)	184
BstC8I	GCNNGC	3 cut(s)	102, 185, 245
BstF5I	GGATG	2 cut(s)	373, 435
BstH2I	RGCGCY	1 cut(s)	150
BstHHI	GCGC	1 cut(s)	149
BstKTI	GATC	2 cut(s)	349, 520
BstMAI	GTCTC	2 cut(s)	161, 395
BstMBI	GATC	2 cut(s)	346, 517
BstMCI	CGRYCG	1 cut(s)	46
BstMWI	GCNNNNNNNGC	7 cut(s)	26, 91, 97, 184, 227, 268, 274
BstNI	CCWGG	2 cut(s)	273, 440
BstSCI	CCNGG	5 cut(s)	29, 40, 162, 271, 438
BstSFI	CTRYAG	1 cut(s)	497
BstV1I	GCAGC	1 cut(s)	436
BstZI	CGGCCG	1 cut(s)	43
BsuRI	GGCC	5 cut(s)	20, 45, 104, 119, 473
BtgZI	GCGATG	1 cut(s)	10
BtrI	CACGTC	2 cut(s)	153, 405
BtsCI	GGATG	2 cut(s)	373, 435
BtsI	GCAGTG	1 cut(s)	185
BtsIMutI	CAGTG	3 cut(s)	70, 185, 254
Cac8I	GCNNGC	3 cut(s)	102, 185, 245
CfoI	GCGC	1 cut(s)	149
Cfr13I	GGNCC	3 cut(s)	18, 471, 508
CseI	GACGC	2 cut(s)	183, 268
Csp6I	GTAC	1 cut(s)	384
CviQI	GTAC	1 cut(s)	384
DinI	GGCGCC	1 cut(s)	148
DpnI	GATC	2 cut(s)	348, 519
DpnII	GATC	2 cut(s)	346, 517
EaeI	YGGCCR	2 cut(s)	43, 102
EagI	CGGCCG	1 cut(s)	43
Eam1104I	CTCTTC	3 cut(s)	127, 299, 327
EarI	CTCTTC	3 cut(s)	127, 299, 327
EciI	GGCGGA	2 cut(s)	109, 215
Ecl136II	GAGCTC	1 cut(s)	114
EclXI	CGGCCG	1 cut(s)	43
Eco24I	GRGCYC	1 cut(s)	116
Eco47I	GGWCC	1 cut(s)	508
Eco52I	CGGCCG	1 cut(s)	43
Eco53kI	GAGCTC	1 cut(s)	114
EcoICRI	GAGCTC	1 cut(s)	114
EcoRII	CCWGG	2 cut(s)	271, 438
EcoT38I	GRGCYC	1 cut(s)	116
EgeI	GGCGCC	1 cut(s)	148
EheI	GGCGCC	1 cut(s)	148
Esp3I	CGTCTC	2 cut(s)	161, 395
FauI	CCCGC	1 cut(s)	223
FbaI	TGATCA	1 cut(s)	346
FblI	GTMKAC	1 cut(s)	503
Fnu4HI	GCNGC	6 cut(s)	46, 92, 176, 228, 269, 425
FokI	GGATG	2 cut(s)	380, 442
FriOI	GRGCYC	1 cut(s)	116
Fsp4HI	GCNGC	6 cut(s)	46, 92, 176, 228, 269, 425
FspBI	CTAG	1 cut(s)	485
GlaI	GCGC	1 cut(s)	148
GluI	GCNGC	6 cut(s)	46, 92, 176, 228, 269, 425
HaeII	RGCGCY	1 cut(s)	150
HaeIII	GGCC	5 cut(s)	20, 45, 104, 119, 473
HapII	CCGG	4 cut(s)	31, 42, 88, 164
HgaI	GACGC	2 cut(s)	183, 268
HhaI	GCGC	1 cut(s)	149
Hin1I	GRCGYC	3 cut(s)	147, 194, 251
Hin6I	GCGC	1 cut(s)	147
HinP1I	GCGC	1 cut(s)	147
HincII	GTYRAC	1 cut(s)	504
HindII	GTYRAC	1 cut(s)	504
HinfI	GANTC	1 cut(s)	107
HpaII	CCGG	4 cut(s)	31, 42, 88, 164
HphI	GGTGA	2 cut(s)	341, 457
Hpy166II	GTNNAC	1 cut(s)	504
Hpy188I	TCNGA	4 cut(s)	127, 157, 411, 522
Hpy188III	TCNNGA	2 cut(s)	64, 460
Hpy8I	GTNNAC	1 cut(s)	504
Hpy99I	CGWCG	3 cut(s)	157, 199, 508
HpyCH4III	ACNGT	3 cut(s)	388, 501, 508
HpyCH4IV	ACGT	3 cut(s)	152, 251, 404
HpyCH4V	TGCA	2 cut(s)	4, 424
HpyF10VI	GCNNNNNNNGC	7 cut(s)	26, 91, 97, 184, 227, 268, 274
HpySE526I	ACGT	3 cut(s)	152, 251, 404
Hsp92I	GRCGYC	3 cut(s)	147, 194, 251
HspAI	GCGC	1 cut(s)	147
KasI	GGCGCC	1 cut(s)	146
Ksp22I	TGATCA	1 cut(s)	346
Kzo9I	GATC	2 cut(s)	346, 517
LmnI	GCTCC	2 cut(s)	39, 90
Lsp1109I	GCAGC	1 cut(s)	436
LweI	GCATC	1 cut(s)	411
MaeI	CTAG	1 cut(s)	485
MaeII	ACGT	3 cut(s)	152, 251, 404
MaeIII	GTNAC	1 cut(s)	252
MalI	GATC	2 cut(s)	348, 519
MboI	GATC	2 cut(s)	346, 517
MboII	GAAGA	3 cut(s)	114, 316, 344
MhlI	GDGCHC	1 cut(s)	116
Mly113I	GGCGCC	1 cut(s)	147
MlyI	GAGTC	1 cut(s)	116
MmeI	TCCRAC	1 cut(s)	135
MspA1I	CMGCKG	1 cut(s)	427
MspI	CCGG	4 cut(s)	31, 42, 88, 164
MspR9I	CCNGG	5 cut(s)	31, 42, 164, 273, 440
MvaI	CCWGG	2 cut(s)	273, 440
MwoI	GCNNNNNNNGC	7 cut(s)	26, 91, 97, 184, 227, 268, 274
NarI	GGCGCC	1 cut(s)	147
NciI	CCSGG	3 cut(s)	31, 42, 164
NdeII	GATC	2 cut(s)	346, 517
NlaIV	GGNNCC	2 cut(s)	35, 148
NmeAIII	GCCGAG	3 cut(s)	95, 130, 499
NmuCI	GTSAC	1 cut(s)	252
PflFI	GACNNNGTC	1 cut(s)	262
PkrI	GCNGC	6 cut(s)	47, 93, 177, 229, 270, 426
PleI	GAGTC	1 cut(s)	115
PluTI	GGCGCC	1 cut(s)	150
PpsI	GAGTC	1 cut(s)	115
Psp124BI	GAGCTC	1 cut(s)	116
Psp6I	CCWGG	2 cut(s)	271, 438
PspGI	CCWGG	2 cut(s)	271, 438
PspN4I	GGNNCC	2 cut(s)	35, 148
PspPI	GGNCC	3 cut(s)	18, 471, 508
PsyI	GACNNNGTC	1 cut(s)	262
RsaI	GTAC	1 cut(s)	385
RsaNI	GTAC	1 cut(s)	384
SacI	GAGCTC	1 cut(s)	116
SalI	GTCGAC	1 cut(s)	502
SatI	GCNGC	6 cut(s)	46, 92, 176, 228, 269, 425
Sau3AI	GATC	2 cut(s)	346, 517
Sau96I	GGNCC	3 cut(s)	18, 471, 508
SchI	GAGTC	1 cut(s)	116
ScrFI	CCNGG	5 cut(s)	31, 42, 164, 273, 440
SduI	GDGCHC	1 cut(s)	116
SetI	ASST	8 cut(s)	116, 155, 254, 297, 318, 407, 447, 467
SfaNI	GCATC	1 cut(s)	411
SfcI	CTRYAG	1 cut(s)	497
SfoI	GGCGCC	1 cut(s)	148
SinI	GGWCC	1 cut(s)	508
SspDI	GGCGCC	1 cut(s)	146
SspMI	CTAG	1 cut(s)	485
SstI	GAGCTC	1 cut(s)	116
StyD4I	CCNGG	5 cut(s)	29, 40, 162, 271, 438
TaaI	ACNGT	3 cut(s)	388, 501, 508
TaiI	ACGT	3 cut(s)	155, 254, 407
TaqI	TCGA	3 cut(s)	110, 459, 503
TauI	GCSGC	5 cut(s)	48, 94, 178, 230, 271
TscAI	CASTG	3 cut(s)	77, 185, 261
TseFI	GTSAC	1 cut(s)	252
TseI	GCWGC	1 cut(s)	424
Tsp45I	GTSAC	1 cut(s)	252
TspRI	CASTG	3 cut(s)	77, 185, 261
Tth111I	GACNNNGTC	1 cut(s)	262
VpaK11BI	GGWCC	1 cut(s)	508
XmiI	GTMKAC	1 cut(s)	503
XspI	CTAG	1 cut(s)	485
ZraI	GACGTC	1 cut(s)	252

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.