Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0033719.1

Orthogroup ID

OG0014803

Physical Location & Seq

Genomic Coordinates Forward (+)

400 .. 714

Gene Structure 315 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0033719.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

atgagcggcggtggtgataatagagtgaaggggtcgtggagtcctcaggaggactcaacgctgatcaagctggtggcggagcacggcccgcgcaactggtccttgatcagctccagcatccccggccggtccggaaagtcgtgtaggctgaggtggtgcaaccagctcagccccgacgtgcagcacaagccgttctccccggccgaagacgccgcgatcgtcagggcccacgcgctgcacggcaacaagtgggccaccatcgcccggctcctccccggccgcaccgacaatgccatcaagaaccactggaactcc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0006952 GO:0006970 GO:0008150 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009737 GO:0009739 GO:0009751 GO:0009753 GO:0009889 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010646 GO:0010647 GO:0010928 GO:0010929 GO:0014070 GO:0019219 GO:0019222 GO:0023051 GO:0023056 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0033993 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0046677 GO:0046686 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048869 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0097305 GO:0098542 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1903506 GO:2000022 GO:2000031 GO:2000112 GO:2001023 GO:2001038 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04151 ko05166 map04151 map05166

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

105

Amino Acids

11.53

Weight (kDa)

10.03

Isoelectric Point (pI)

53.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014803)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g24730
malus_domestica	MD01G1155100.v1.1 MD07G1224200.v1.1
prunus_persica	Prupe.2G252700_v2.0.a1
pyrus_communis	pycom01g17250 pycom07g20280
rosa_chinensis	RchiOBHm_Chr1g0370581
rosa_laevigata	RLG00000027025
rosa_multiflora	Rmu_co8167220.1_g000001 Rmu_sc0002021.1_g000013 Rmu_sc0033719.1_g000001
rosa_roxburghii	Rroxscaffold_4G00286410
rosa_rugosa	Rorug01G0357600
rosa_samantha	Rh1AG367100 Rh1BG330600 Rh1DG362100
rosa_wichuraiana	Rw1G032310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	6
AccII	CGCG	3 cut(s)	91, 215, 233
AccIII	TCCGGA	1 cut(s)	131
AciI	CCGC	6 cut(s)	6, 9, 77, 89, 213, 280
AcoI	YGGCCR	3 cut(s)	124, 201, 277
AcyI	GRCGYC	1 cut(s)	210
AfiI	CCNNNNNNNGG	1 cut(s)	264
AjiI	CACGTC	1 cut(s)	178
AluBI	AGCT	3 cut(s)	70, 111, 166
AluI	AGCT	3 cut(s)	70, 111, 166
Alw21I	GWGCWC	1 cut(s)	84
Aor13HI	TCCGGA	1 cut(s)	131
AoxI	GGCC	6 cut(s)	85, 124, 201, 225, 252, 277
ApaI	GGGCCC	1 cut(s)	229
ApeKI	GCWGC	2 cut(s)	181, 235
AspLEI	GCGC	2 cut(s)	93, 235
AspS9I	GGNCC	6 cut(s)	86, 99, 129, 225, 226, 252
AsuC2I	CCSGG	4 cut(s)	123, 200, 265, 276
AsuHPI	GGTGA	1 cut(s)	26
AvaII	GGWCC	2 cut(s)	99, 129
AxyI	CCTNAGG	1 cut(s)	45
BaeGI	GKGCMC	1 cut(s)	229
BanII	GRGCYC	1 cut(s)	229
BbsI	GAAGAC	1 cut(s)	213
Bbv12I	GWGCWC	1 cut(s)	84
BbvCI	CCTCAGC	1 cut(s)	149
BbvI	GCAGC	2 cut(s)	193, 222
BccI	CCATC	2 cut(s)	266, 302
BceAI	ACGGC	3 cut(s)	100, 175, 256
BclI	TGATCA	2 cut(s)	63, 105
BcnI	CCSGG	4 cut(s)	123, 200, 265, 276
BisI	GCNGC	5 cut(s)	7, 182, 213, 236, 280
BlpI	GCTNAGC	1 cut(s)	167
BlsI	GCNGC	5 cut(s)	8, 183, 214, 237, 281
Bme1390I	CCNGG	4 cut(s)	123, 200, 265, 276
Bme18I	GGWCC	2 cut(s)	99, 129
BmgBI	CACGTC	1 cut(s)	178
BmgT120I	GGNCC	6 cut(s)	86, 99, 129, 225, 226, 252
BmiI	GGNNCC	2 cut(s)	227, 269
BmrFI	CCNGG	4 cut(s)	123, 200, 265, 276
BmsI	GCATC	1 cut(s)	126
BpiI	GAAGAC	1 cut(s)	213
BpmI	CTGGAG	1 cut(s)	97
Bpu10I	CCTNAGC	1 cut(s)	149
Bpu1102I	GCTNAGC	1 cut(s)	167
BpuMI	CCSGG	4 cut(s)	123, 200, 265, 276
BsaHI	GRCGYC	1 cut(s)	210
BsaJI	CCNNGG	3 cut(s)	121, 198, 274
BsaWI	WCCGGW	1 cut(s)	131
BsaXI	ACNNNNNCTCC	1 cut(s)	296
Bsc4I	CCNNNNNNNGG	1 cut(s)	264
Bse118I	RCCGGY	1 cut(s)	126
Bse1I	ACTGG	2 cut(s)	101, 311
Bse21I	CCTNAGG	1 cut(s)	45
BseAI	TCCGGA	1 cut(s)	131
BseDI	CCNNGG	3 cut(s)	121, 198, 274
BseGI	GGATG	1 cut(s)	117
BseLI	CCNNNNNNNGG	1 cut(s)	264
BseMII	CTCAG	3 cut(s)	59, 140, 181
BseNI	ACTGG	2 cut(s)	101, 311
BseRI	GAGGAG	1 cut(s)	260
BseSI	GKGCMC	1 cut(s)	229
BseX3I	CGGCCG	3 cut(s)	124, 201, 277
BseXI	GCAGC	2 cut(s)	193, 222
BsgI	GTGCAG	2 cut(s)	200, 221
Bsh1236I	CGCG	3 cut(s)	91, 215, 233
Bsh1285I	CGRYCG	4 cut(s)	127, 204, 219, 280
BshFI	GGCC	6 cut(s)	87, 126, 203, 227, 254, 279
BsiEI	CGRYCG	4 cut(s)	127, 204, 219, 280
BsiHKAI	GWGCWC	1 cut(s)	84
BsiSI	CCGG	6 cut(s)	123, 127, 132, 200, 265, 276
BslI	CCNNNNNNNGG	1 cut(s)	264
BsnI	GGCC	6 cut(s)	87, 126, 203, 227, 254, 279
Bsp120I	GGGCCC	1 cut(s)	225
Bsp1286I	GDGCHC	2 cut(s)	84, 229
Bsp13I	TCCGGA	1 cut(s)	131
Bsp143I	GATC	3 cut(s)	63, 105, 216
Bsp1720I	GCTNAGC	1 cut(s)	167
BspACI	CCGC	6 cut(s)	6, 9, 77, 89, 213, 280
BspANI	GGCC	6 cut(s)	87, 126, 203, 227, 254, 279
BspCNI	CTCAG	3 cut(s)	58, 141, 180
BspEI	TCCGGA	1 cut(s)	131
BspFNI	CGCG	3 cut(s)	91, 215, 233
BspLI	GGNNCC	2 cut(s)	227, 269
BsrBI	CCGCTC	1 cut(s)	6
BsrFI	RCCGGY	1 cut(s)	126
BsrI	ACTGG	2 cut(s)	101, 311
BssAI	RCCGGY	1 cut(s)	126
BssECI	CCNNGG	3 cut(s)	121, 198, 274
BssMI	GATC	3 cut(s)	63, 105, 216
BssNI	GRCGYC	1 cut(s)	210
BstACI	GRCGYC	1 cut(s)	210
BstC8I	GCNNGC	1 cut(s)	89
BstDEI	CTNAG	3 cut(s)	45, 149, 167
BstF5I	GGATG	1 cut(s)	117
BstFNI	CGCG	3 cut(s)	91, 215, 233
BstHHI	GCGC	2 cut(s)	93, 235
BstKTI	GATC	3 cut(s)	66, 108, 219
BstMBI	GATC	3 cut(s)	63, 105, 216
BstMCI	CGRYCG	4 cut(s)	127, 204, 219, 280
BstMWI	GCNNNNNNNGC	6 cut(s)	67, 88, 123, 187, 209, 260
BstSCI	CCNGG	4 cut(s)	121, 198, 263, 274
BstSLI	GKGCMC	1 cut(s)	229
BstUI	CGCG	3 cut(s)	91, 215, 233
BstV1I	GCAGC	2 cut(s)	193, 222
BstV2I	GAAGAC	1 cut(s)	213
BstZI	CGGCCG	3 cut(s)	124, 201, 277
Bsu36I	CCTNAGG	1 cut(s)	45
BsuRI	GGCC	6 cut(s)	87, 126, 203, 227, 254, 279
BtgZI	GCGATG	1 cut(s)	244
BtrI	CACGTC	1 cut(s)	178
BtsCI	GGATG	1 cut(s)	117
BtsIMutI	CAGTG	1 cut(s)	304
Cac8I	GCNNGC	1 cut(s)	89
CfoI	GCGC	2 cut(s)	93, 235
Cfr10I	RCCGGY	1 cut(s)	126
Cfr13I	GGNCC	6 cut(s)	86, 99, 129, 225, 226, 252
CpoI	CGGWCCG	1 cut(s)	129
CseI	GACGC	1 cut(s)	218
CspI	CGGWCCG	1 cut(s)	129
DdeI	CTNAG	3 cut(s)	45, 149, 167
DpnI	GATC	3 cut(s)	65, 107, 218
DpnII	GATC	3 cut(s)	63, 105, 216
EaeI	YGGCCR	3 cut(s)	124, 201, 277
EagI	CGGCCG	3 cut(s)	124, 201, 277
EciI	GGCGGA	1 cut(s)	92
EclXI	CGGCCG	3 cut(s)	124, 201, 277
Eco24I	GRGCYC	1 cut(s)	229
Eco47I	GGWCC	2 cut(s)	99, 129
Eco52I	CGGCCG	3 cut(s)	124, 201, 277
Eco81I	CCTNAGG	1 cut(s)	45
EcoO109I	RGGNCCY	1 cut(s)	225
EcoT38I	GRGCYC	1 cut(s)	229
FauI	CCCGC	1 cut(s)	96
FbaI	TGATCA	2 cut(s)	63, 105
Fnu4HI	GCNGC	5 cut(s)	7, 182, 213, 236, 280
FokI	GGATG	1 cut(s)	104
FriOI	GRGCYC	1 cut(s)	229
Fsp4HI	GCNGC	5 cut(s)	7, 182, 213, 236, 280
GlaI	GCGC	2 cut(s)	92, 234
GluI	GCNGC	5 cut(s)	7, 182, 213, 236, 280
GsuI	CTGGAG	1 cut(s)	97
HaeIII	GGCC	6 cut(s)	87, 126, 203, 227, 254, 279
HapII	CCGG	6 cut(s)	123, 127, 132, 200, 265, 276
HgaI	GACGC	1 cut(s)	218
HhaI	GCGC	2 cut(s)	93, 235
Hin1I	GRCGYC	1 cut(s)	210
Hin6I	GCGC	2 cut(s)	91, 233
HinP1I	GCGC	2 cut(s)	91, 233
HinfI	GANTC	2 cut(s)	40, 53
HpaII	CCGG	6 cut(s)	123, 127, 132, 200, 265, 276
HphI	GGTGA	1 cut(s)	26
Hpy188III	TCNNGA	3 cut(s)	47, 132, 298
Hpy99I	CGWCG	1 cut(s)	179
HpyAV	CCTTC	1 cut(s)	22
HpyCH4IV	ACGT	1 cut(s)	177
HpyCH4V	TGCA	3 cut(s)	159, 181, 238
HpyF10VI	GCNNNNNNNGC	6 cut(s)	67, 88, 123, 187, 209, 260
HpyF3I	CTNAG	3 cut(s)	45, 149, 167
HpySE526I	ACGT	1 cut(s)	177
Hsp92I	GRCGYC	1 cut(s)	210
HspAI	GCGC	2 cut(s)	91, 233
Kpn2I	TCCGGA	1 cut(s)	131
Ksp22I	TGATCA	2 cut(s)	63, 105
Kzo9I	GATC	3 cut(s)	63, 105, 216
LmnI	GCTCC	3 cut(s)	79, 116, 273
Lsp1109I	GCAGC	2 cut(s)	193, 222
LweI	GCATC	1 cut(s)	126
MaeII	ACGT	1 cut(s)	177
MalI	GATC	3 cut(s)	65, 107, 218
MbiI	CCGCTC	1 cut(s)	6
MboI	GATC	3 cut(s)	63, 105, 216
MboII	GAAGA	1 cut(s)	218
MhlI	GDGCHC	2 cut(s)	84, 229
MlyI	GAGTC	2 cut(s)	47, 49
MnlI	CCTC	4 cut(s)	43, 54, 144, 281
MroI	TCCGGA	1 cut(s)	131
MspI	CCGG	6 cut(s)	123, 127, 132, 200, 265, 276
MspR9I	CCNGG	4 cut(s)	123, 200, 265, 276
MvnI	CGCG	3 cut(s)	91, 215, 233
MwoI	GCNNNNNNNGC	6 cut(s)	67, 88, 123, 187, 209, 260
NciI	CCSGG	4 cut(s)	123, 200, 265, 276
NdeII	GATC	3 cut(s)	63, 105, 216
NlaIV	GGNNCC	2 cut(s)	227, 269
PcsI	WCGNNNNNNNCGW	1 cut(s)	216
PkrI	GCNGC	5 cut(s)	8, 183, 214, 237, 281
Ple19I	CGATCG	1 cut(s)	219
PleI	GAGTC	2 cut(s)	47, 48
PpsI	GAGTC	2 cut(s)	47, 48
PspN4I	GGNNCC	2 cut(s)	227, 269
PspOMI	GGGCCC	1 cut(s)	225
PspPI	GGNCC	6 cut(s)	86, 99, 129, 225, 226, 252
PvuI	CGATCG	1 cut(s)	219
Rsr2I	CGGWCCG	1 cut(s)	129
RsrII	CGGWCCG	1 cut(s)	129
SatI	GCNGC	5 cut(s)	7, 182, 213, 236, 280
Sau3AI	GATC	3 cut(s)	63, 105, 216
Sau96I	GGNCC	6 cut(s)	86, 99, 129, 225, 226, 252
SchI	GAGTC	2 cut(s)	47, 49
ScrFI	CCNGG	4 cut(s)	123, 200, 265, 276
SduI	GDGCHC	2 cut(s)	84, 229
SetI	ASST	5 cut(s)	72, 113, 155, 168, 180
SfaNI	GCATC	1 cut(s)	126
SinI	GGWCC	2 cut(s)	99, 129
SsiI	CCGC	6 cut(s)	6, 9, 77, 89, 213, 280
StyD4I	CCNGG	4 cut(s)	121, 198, 263, 274
TaiI	ACGT	1 cut(s)	180
TauI	GCSGC	3 cut(s)	9, 215, 282
TscAI	CASTG	1 cut(s)	311
TseI	GCWGC	2 cut(s)	181, 235
TspRI	CASTG	1 cut(s)	311
VpaK11BI	GGWCC	2 cut(s)	99, 129

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.