Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0014803

Physical Location & Seq

Genomic Coordinates Forward (+)

60617033 .. 60617809

Gene Structure 777 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G032310.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGAGCGGCGGTGGTGATAATAGAGTGAAGGGGTCGTGGAGTCCTCAGGAGGACTCAACGCTGATCAAGCTGGTGGCCGAGCACGGCCCGCGCAACTGGTCCTTGATCAGCTCCGGCATCCCCGGCCGGTCCGGAAAGTCGTGTAGGCTGAGGTGGTGCAACCAGCTCAGCCCCGACGTGCAGCACAAGCCGTTCTCGCCCGCCGAGGACGCCGCGATCGTCCGGGCCCACGCGCTGCACGGCAACAAGTGGGCCACCATCGCCCGGCTCCTCCCCGGCCGCACCGACAATGCCATCAAGAACCACTGGAACTCCACGCTCCGGCGAAGGAGGCTGGCCGAGTCGAGCTCGGCCTCTTCCGAGTCCAACTCGGCCGCGTTGAAGCGGTTGATTGGCGCCACGTCGGCCGACCCGGAGACGAAGCGGCAGTGCTTGCGTGGGGCGGCGGAGGAGGATAGTTTCAAAGCGGTTGCGGCGGGAGTGGAGGGCGTGCTGACGTCACTGACGCTGTCGCCGCCTGGGCAGAAAGTGGAAAACGAGGTCGTTTTGAAGAGTGAGGAGGTGGGGGAGGAGGAGGAAGAGGACAATGATGATCATCAAGAGGAGGCGGTGGATGACGAGGAGAAATGTACGGTGGAGATGGAGGAGACGTGTCTGATGACGATGATGCAGCGGATGATAGCCCAAGAGGTGAGGAACTACGTCGAGAGCTTACGGGCCGAGAATGGGCTAGTATTTGGGCCACAGTCGACGGTCCAAAATGATCGGAAATGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0006952 GO:0006970 GO:0008150 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009737 GO:0009739 GO:0009751 GO:0009753 GO:0009889 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010646 GO:0010647 GO:0010928 GO:0010929 GO:0014070 GO:0019219 GO:0019222 GO:0023051 GO:0023056 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0033993 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0046677 GO:0046686 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048869 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0097305 GO:0098542 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1903506 GO:2000022 GO:2000031 GO:2000112 GO:2001023 GO:2001038 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04151 ko05166 map04151 map05166

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

258

Amino Acids

28.35

Weight (kDa)

5.31

Isoelectric Point (pI)

62.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	10 - 56	2.9e-18	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	13 - 71	2.5e-16	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	63 - 106	5.5e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	65 - 110	7.2e-08	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014803)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g24730
malus_domestica	MD01G1155100.v1.1 MD07G1224200.v1.1
prunus_persica	Prupe.2G252700_v2.0.a1
pyrus_communis	pycom01g17250 pycom07g20280
rosa_chinensis	RchiOBHm_Chr1g0370581
rosa_laevigata	RLG00000027025
rosa_multiflora	Rmu_co8167220.1_g000001 Rmu_sc0002021.1_g000013 Rmu_sc0033719.1_g000001
rosa_roxburghii	Rroxscaffold_4G00286410
rosa_rugosa	Rorug01G0357600
rosa_samantha	Rh1AG367100 Rh1BG330600 Rh1DG362100
rosa_wichuraiana	Rw1G032310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	500
AccB1I	GGYRCC	1 cut(s)	395
AccBSI	CCGCTC	1 cut(s)	6
AccI	GTMKAC	1 cut(s)	749
AccII	CGCG	4 cut(s)	91, 215, 233, 377
AccIII	TCCGGA	1 cut(s)	131
AcoI	YGGCCR	6 cut(s)	75, 124, 277, 336, 372, 405
AcyI	GRCGYC	3 cut(s)	210, 396, 497
AfaI	GTAC	1 cut(s)	631
AfiI	CCNNNNNNNGG	3 cut(s)	264, 321, 726
AflIII	ACRYGT	1 cut(s)	650
AgsI	TTSAA	3 cut(s)	382, 463, 550
AjiI	CACGTC	3 cut(s)	178, 402, 651
AjnI	CCWGG	1 cut(s)	517
AluBI	AGCT	5 cut(s)	70, 111, 166, 348, 711
AluI	AGCT	5 cut(s)	70, 111, 166, 348, 711
Alw21I	GWGCWC	2 cut(s)	84, 350
Alw26I	GTCTC	2 cut(s)	410, 641
Aor13HI	TCCGGA	1 cut(s)	131
ApaI	GGGCCC	1 cut(s)	229
ApeKI	GCWGC	3 cut(s)	181, 235, 670
AspLEI	GCGC	3 cut(s)	93, 235, 398
AspS9I	GGNCC	9 cut(s)	86, 99, 129, 225, 226, 252, 717, 740, 754
AsuC2I	CCSGG	5 cut(s)	123, 224, 265, 276, 413
AsuHPI	GGTGA	2 cut(s)	26, 703
AvaII	GGWCC	3 cut(s)	99, 129, 754
AxyI	CCTNAGG	1 cut(s)	45
BaeGI	GKGCMC	1 cut(s)	229
BanI	GGYRCC	1 cut(s)	395
BanII	GRGCYC	2 cut(s)	229, 350
Bbv12I	GWGCWC	2 cut(s)	84, 350
BbvCI	CCTCAGC	1 cut(s)	149
BbvI	GCAGC	3 cut(s)	193, 222, 682
BccI	CCATC	3 cut(s)	266, 302, 634
BceAI	ACGGC	3 cut(s)	100, 175, 256
BciT130I	CCWGG	1 cut(s)	519
BclI	TGATCA	3 cut(s)	63, 105, 592
BcnI	CCSGG	5 cut(s)	123, 224, 265, 276, 413
BcoDI	GTCTC	2 cut(s)	410, 641
BfaI	CTAG	1 cut(s)	731
BfoI	RGCGCY	1 cut(s)	399
BglI	GCCNNNNNGGC	2 cut(s)	404, 520
BlpI	GCTNAGC	1 cut(s)	167
Bme1390I	CCNGG	6 cut(s)	123, 224, 265, 276, 413, 519
Bme18I	GGWCC	3 cut(s)	99, 129, 754
BmgBI	CACGTC	3 cut(s)	178, 402, 651
BmgT120I	GGNCC	9 cut(s)	86, 99, 129, 225, 226, 252, 717, 740, 754
BmiI	GGNNCC	3 cut(s)	227, 269, 397
BmrFI	CCNGG	6 cut(s)	123, 224, 265, 276, 413, 519
BmsI	GCATC	2 cut(s)	126, 657
BplI	GAGNNNNNCTC	4 cut(s)	332, 364, 353, 385
Bpu10I	CCTNAGC	1 cut(s)	149
Bpu1102I	GCTNAGC	1 cut(s)	167
BpuMI	CCSGG	5 cut(s)	123, 224, 265, 276, 413
BsaBI	GATNNNNATC	1 cut(s)	594
BsaHI	GRCGYC	3 cut(s)	210, 396, 497
BsaJI	CCNNGG	4 cut(s)	121, 204, 274, 518
BsaWI	WCCGGW	1 cut(s)	131
BsaXI	ACNNNNNCTCC	4 cut(s)	296, 326, 635, 665
Bsc4I	CCNNNNNNNGG	3 cut(s)	264, 321, 726
Bse118I	RCCGGY	1 cut(s)	126
Bse1I	ACTGG	2 cut(s)	101, 311
Bse21I	CCTNAGG	1 cut(s)	45
Bse8I	GATNNNNATC	1 cut(s)	594
BseAI	TCCGGA	1 cut(s)	131
BseBI	CCWGG	1 cut(s)	519
BseDI	CCNNGG	4 cut(s)	121, 204, 274, 518
BseGI	GGATG	3 cut(s)	117, 619, 681
BseJI	GATNNNNATC	1 cut(s)	594
BseLI	CCNNNNNNNGG	3 cut(s)	264, 321, 726
BseMII	CTCAG	3 cut(s)	59, 140, 181
BseNI	ACTGG	2 cut(s)	101, 311
BseRI	GAGGAG	8 cut(s)	260, 464, 572, 584, 587, 617, 635, 659
BseSI	GKGCMC	1 cut(s)	229
BseX3I	CGGCCG	4 cut(s)	124, 277, 372, 405
BseXI	GCAGC	3 cut(s)	193, 222, 682
BsgI	GTGCAG	2 cut(s)	200, 221
Bsh1236I	CGCG	4 cut(s)	91, 215, 233, 377
Bsh1285I	CGRYCG	5 cut(s)	127, 219, 280, 375, 408
BshNI	GGYRCC	1 cut(s)	395
BsiEI	CGRYCG	5 cut(s)	127, 219, 280, 375, 408
BsiHKAI	GWGCWC	2 cut(s)	84, 350
BsiSI	CCGG	9 cut(s)	114, 123, 127, 132, 223, 265, 276, 322, 413
BslI	CCNNNNNNNGG	3 cut(s)	264, 321, 726
BsmAI	GTCTC	2 cut(s)	410, 641
BsmBI	CGTCTC	2 cut(s)	410, 641
Bsp120I	GGGCCC	1 cut(s)	225
Bsp1286I	GDGCHC	3 cut(s)	84, 229, 350
Bsp13I	TCCGGA	1 cut(s)	131
Bsp143I	GATC	5 cut(s)	63, 105, 216, 592, 763
Bsp1720I	GCTNAGC	1 cut(s)	167
BspCNI	CTCAG	3 cut(s)	58, 141, 180
BspEI	TCCGGA	1 cut(s)	131
BspFNI	CGCG	4 cut(s)	91, 215, 233, 377
BspLI	GGNNCC	3 cut(s)	227, 269, 397
BspT107I	GGYRCC	1 cut(s)	395
BsrBI	CCGCTC	1 cut(s)	6
BsrFI	RCCGGY	1 cut(s)	126
BsrI	ACTGG	2 cut(s)	101, 311
BssAI	RCCGGY	1 cut(s)	126
BssECI	CCNNGG	4 cut(s)	121, 204, 274, 518
BssMI	GATC	5 cut(s)	63, 105, 216, 592, 763
BssNI	GRCGYC	3 cut(s)	210, 396, 497
Bst2UI	CCWGG	1 cut(s)	519
Bst4CI	ACNGT	3 cut(s)	634, 747, 754
Bst6I	CTCTTC	3 cut(s)	361, 545, 573
BstACI	GRCGYC	3 cut(s)	210, 396, 497
BstAPI	GCANNNNNTGC	1 cut(s)	433
BstC8I	GCNNGC	5 cut(s)	89, 201, 336, 434, 491
BstDEI	CTNAG	3 cut(s)	45, 149, 167
BstF5I	GGATG	3 cut(s)	117, 619, 681
BstFNI	CGCG	4 cut(s)	91, 215, 233, 377
BstH2I	RGCGCY	1 cut(s)	399
BstHHI	GCGC	3 cut(s)	93, 235, 398
BstKTI	GATC	5 cut(s)	66, 108, 219, 595, 766
BstMAI	GTCTC	2 cut(s)	410, 641
BstMBI	GATC	5 cut(s)	63, 105, 216, 592, 763
BstMCI	CGRYCG	5 cut(s)	127, 219, 280, 375, 408
BstNI	CCWGG	1 cut(s)	519
BstSCI	CCNGG	6 cut(s)	121, 222, 263, 274, 411, 517
BstSLI	GKGCMC	1 cut(s)	229
BstUI	CGCG	4 cut(s)	91, 215, 233, 377
BstV1I	GCAGC	3 cut(s)	193, 222, 682
BstZI	CGGCCG	4 cut(s)	124, 277, 372, 405
Bsu36I	CCTNAGG	1 cut(s)	45
BtgZI	GCGATG	1 cut(s)	244
BtrI	CACGTC	3 cut(s)	178, 402, 651
BtsCI	GGATG	3 cut(s)	117, 619, 681
BtsI	GCAGTG	1 cut(s)	434
BtsIMutI	CAGTG	3 cut(s)	304, 434, 500
Cac8I	GCNNGC	5 cut(s)	89, 201, 336, 434, 491
CfoI	GCGC	3 cut(s)	93, 235, 398
Cfr10I	RCCGGY	1 cut(s)	126
Cfr13I	GGNCC	9 cut(s)	86, 99, 129, 225, 226, 252, 717, 740, 754
CpoI	CGGWCCG	1 cut(s)	129
CseI	GACGC	2 cut(s)	218, 514
Csp6I	GTAC	1 cut(s)	630
CspI	CGGWCCG	1 cut(s)	129
CviQI	GTAC	1 cut(s)	630
DdeI	CTNAG	3 cut(s)	45, 149, 167
DinI	GGCGCC	1 cut(s)	397
DpnI	GATC	5 cut(s)	65, 107, 218, 594, 765
DpnII	GATC	5 cut(s)	63, 105, 216, 592, 763
EaeI	YGGCCR	6 cut(s)	75, 124, 277, 336, 372, 405
EagI	CGGCCG	4 cut(s)	124, 277, 372, 405
Eam1104I	CTCTTC	3 cut(s)	361, 545, 573
EarI	CTCTTC	3 cut(s)	361, 545, 573
EciI	GGCGGA	1 cut(s)	461
Ecl136II	GAGCTC	1 cut(s)	348
EclXI	CGGCCG	4 cut(s)	124, 277, 372, 405
Eco24I	GRGCYC	2 cut(s)	229, 350
Eco47I	GGWCC	3 cut(s)	99, 129, 754
Eco52I	CGGCCG	4 cut(s)	124, 277, 372, 405
Eco53kI	GAGCTC	1 cut(s)	348
Eco81I	CCTNAGG	1 cut(s)	45
EcoICRI	GAGCTC	1 cut(s)	348
EcoRII	CCWGG	1 cut(s)	517
EcoT38I	GRGCYC	2 cut(s)	229, 350
EgeI	GGCGCC	1 cut(s)	397
EheI	GGCGCC	1 cut(s)	397
Esp3I	CGTCTC	2 cut(s)	410, 641
FauI	CCCGC	3 cut(s)	96, 208, 469
FbaI	TGATCA	3 cut(s)	63, 105, 592
FblI	GTMKAC	1 cut(s)	749
FokI	GGATG	3 cut(s)	104, 626, 688
FriOI	GRGCYC	2 cut(s)	229, 350
FspBI	CTAG	1 cut(s)	731
GlaI	GCGC	3 cut(s)	92, 234, 397
HaeII	RGCGCY	1 cut(s)	399
HapII	CCGG	9 cut(s)	114, 123, 127, 132, 223, 265, 276, 322, 413
HgaI	GACGC	2 cut(s)	218, 514
HhaI	GCGC	3 cut(s)	93, 235, 398
Hin1I	GRCGYC	3 cut(s)	210, 396, 497
Hin6I	GCGC	3 cut(s)	91, 233, 396
HinP1I	GCGC	3 cut(s)	91, 233, 396
HincII	GTYRAC	1 cut(s)	750
HindII	GTYRAC	1 cut(s)	750
HinfI	GANTC	4 cut(s)	40, 53, 341, 362
HpaII	CCGG	9 cut(s)	114, 123, 127, 132, 223, 265, 276, 322, 413
HphI	GGTGA	2 cut(s)	26, 703
Hpy166II	GTNNAC	1 cut(s)	750
Hpy188I	TCNGA	3 cut(s)	361, 657, 768
Hpy188III	TCNNGA	5 cut(s)	47, 132, 298, 599, 706
Hpy8I	GTNNAC	1 cut(s)	750
Hpy99I	CGWCG	4 cut(s)	179, 406, 707, 754
HpyAV	CCTTC	2 cut(s)	22, 321
HpyCH4III	ACNGT	3 cut(s)	634, 747, 754
HpyCH4IV	ACGT	5 cut(s)	177, 401, 497, 650, 702
HpyCH4V	TGCA	4 cut(s)	159, 181, 238, 670
HpyF3I	CTNAG	3 cut(s)	45, 149, 167
HpySE526I	ACGT	5 cut(s)	177, 401, 497, 650, 702
Hsp92I	GRCGYC	3 cut(s)	210, 396, 497
HspAI	GCGC	3 cut(s)	91, 233, 396
KasI	GGCGCC	1 cut(s)	395
Kpn2I	TCCGGA	1 cut(s)	131
Ksp22I	TGATCA	3 cut(s)	63, 105, 592
Kzo9I	GATC	5 cut(s)	63, 105, 216, 592, 763
LmnI	GCTCC	3 cut(s)	116, 273, 324
Lsp1109I	GCAGC	3 cut(s)	193, 222, 682
LweI	GCATC	2 cut(s)	126, 657
MaeI	CTAG	1 cut(s)	731
MaeII	ACGT	5 cut(s)	177, 401, 497, 650, 702
MaeIII	GTNAC	1 cut(s)	498
MalI	GATC	5 cut(s)	65, 107, 218, 594, 765
MbiI	CCGCTC	1 cut(s)	6
MboI	GATC	5 cut(s)	63, 105, 216, 592, 763
MboII	GAAGA	3 cut(s)	348, 562, 590
MhlI	GDGCHC	3 cut(s)	84, 229, 350
Mly113I	GGCGCC	1 cut(s)	396
MlyI	GAGTC	4 cut(s)	47, 49, 350, 371
MmeI	TCCRAC	1 cut(s)	390
MroI	TCCGGA	1 cut(s)	131
MspA1I	CMGCKG	1 cut(s)	673
MspI	CCGG	9 cut(s)	114, 123, 127, 132, 223, 265, 276, 322, 413
MspR9I	CCNGG	6 cut(s)	123, 224, 265, 276, 413, 519
MvaI	CCWGG	1 cut(s)	519
MvnI	CGCG	4 cut(s)	91, 215, 233, 377
NarI	GGCGCC	1 cut(s)	396
NciI	CCSGG	5 cut(s)	123, 224, 265, 276, 413
NdeII	GATC	5 cut(s)	63, 105, 216, 592, 763
NlaIV	GGNNCC	3 cut(s)	227, 269, 397
NmeAIII	GCCGAG	6 cut(s)	103, 229, 329, 350, 364, 745
NmuCI	GTSAC	1 cut(s)	498
PcsI	WCGNNNNNNNCGW	1 cut(s)	216
PflFI	GACNNNGTC	1 cut(s)	508
Ple19I	CGATCG	1 cut(s)	219
PleI	GAGTC	4 cut(s)	47, 48, 349, 370
PluTI	GGCGCC	1 cut(s)	399
PpsI	GAGTC	4 cut(s)	47, 48, 349, 370
Psp124BI	GAGCTC	1 cut(s)	350
Psp6I	CCWGG	1 cut(s)	517
PspGI	CCWGG	1 cut(s)	517
PspN4I	GGNNCC	3 cut(s)	227, 269, 397
PspOMI	GGGCCC	1 cut(s)	225
PspPI	GGNCC	9 cut(s)	86, 99, 129, 225, 226, 252, 717, 740, 754
PsyI	GACNNNGTC	1 cut(s)	508
PvuI	CGATCG	1 cut(s)	219
RsaI	GTAC	1 cut(s)	631
RsaNI	GTAC	1 cut(s)	630
Rsr2I	CGGWCCG	1 cut(s)	129
RsrII	CGGWCCG	1 cut(s)	129
SacI	GAGCTC	1 cut(s)	350
SalI	GTCGAC	1 cut(s)	748
Sau3AI	GATC	5 cut(s)	63, 105, 216, 592, 763
Sau96I	GGNCC	9 cut(s)	86, 99, 129, 225, 226, 252, 717, 740, 754
SchI	GAGTC	4 cut(s)	47, 49, 350, 371
ScrFI	CCNGG	6 cut(s)	123, 224, 265, 276, 413, 519
SduI	GDGCHC	3 cut(s)	84, 229, 350
SfaNI	GCATC	2 cut(s)	126, 657
SfoI	GGCGCC	1 cut(s)	397
SinI	GGWCC	3 cut(s)	99, 129, 754
SspDI	GGCGCC	1 cut(s)	395
SspMI	CTAG	1 cut(s)	731
SstI	GAGCTC	1 cut(s)	350
StyD4I	CCNGG	6 cut(s)	121, 222, 263, 274, 411, 517
TaaI	ACNGT	3 cut(s)	634, 747, 754
TaiI	ACGT	5 cut(s)	180, 404, 500, 653, 705
TaqI	TCGA	3 cut(s)	344, 705, 749
TauI	GCSGC	8 cut(s)	9, 215, 282, 377, 427, 446, 476, 517
TscAI	CASTG	3 cut(s)	311, 434, 507
TseFI	GTSAC	1 cut(s)	498
TseI	GCWGC	3 cut(s)	181, 235, 670
Tsp45I	GTSAC	1 cut(s)	498
TspRI	CASTG	3 cut(s)	311, 434, 507
Tth111I	GACNNNGTC	1 cut(s)	508
VpaK11BI	GGWCC	3 cut(s)	99, 129, 754
XmiI	GTMKAC	1 cut(s)	749
XspI	CTAG	1 cut(s)	731
ZraI	GACGTC	1 cut(s)	498

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.