Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0014803

Physical Location & Seq

Genomic Coordinates Forward (+)

46750886 .. 46751656

Gene Structure 771 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG330600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGAGCGGCGGTGGTGATAACAGAGTGAAGGGGTCGTGGAGTCCTCAGGAGGACGCAACGCTGATCAAGCTGGTGGCGGAGTACGGCCGGCGCAACTGGTCCTTGATCAGCTCCGGCATCCCCGGCCGGTCCGGCAAGTCGTGTAGGCTCAGGTGGTGCAACCAGCTCAGCCCCAACGTGCAGCACAAGCCGTTCTCGCCGGCCGAGGACGCCTCGATCGTCCGGGCACACGCGCTCCACGGCAACAAGTGGGCCACCATCGCCCGGCTCCTCCCCGGCCGCACCGACAATGCCATCAAGAACCACTGGAACTCCACGCTCCGGCGGCGGAGGCTGGCCGAGTCGAGCTCGCCCTCTTCCGAGTCCAACTCGGCCGCGTTGAAGCGGTTGATTGGCCCCACGTCGGACGACCCGGAGATGAAGCGGCAGTGCTCGCGTGGGGCGTCGGCCGAGGAGGATAGTTTCAAAGCGGTTGCGGCGGGAGTGGAGGGCGTGCTGACGTCACTGACGCTGTCGCCGCCTGGGGAGAAAGTGGAAAACGAGGTCGTTTTGAAGAGTGAGGAGGTGGGGGAGGAGGACAATGATGATCATCAAGAGGAGGCGGTGGATGACGAGGAGAAATGTACGGTGGAGATGGAGGAGACGTGTCTGATGACAATGATGCAGCGGATGATAGCCCAGGAGGTGAGGAACTACATCGAGAGCTTACGGGCCGAGAATGGGCTAGCATTTGGGCTACAGTCGACGGTCCAAAATGATCCGAAATGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0006952 GO:0006970 GO:0008150 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009737 GO:0009739 GO:0009751 GO:0009753 GO:0009889 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010646 GO:0010647 GO:0010928 GO:0010929 GO:0014070 GO:0019219 GO:0019222 GO:0023051 GO:0023056 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0033993 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0046677 GO:0046686 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048869 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0097305 GO:0098542 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1903506 GO:2000022 GO:2000031 GO:2000112 GO:2001023 GO:2001038 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04151 ko05166 map04151 map05166

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

256

Amino Acids

28.18

Weight (kDa)

5.41

Isoelectric Point (pI)

66.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	10 - 56	3.5e-18	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	13 - 71	1.7e-17	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	63 - 106	9.6e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	65 - 110	1.6e-07	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014803)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g24730
malus_domestica	MD01G1155100.v1.1 MD07G1224200.v1.1
prunus_persica	Prupe.2G252700_v2.0.a1
pyrus_communis	pycom01g17250 pycom07g20280
rosa_chinensis	RchiOBHm_Chr1g0370581
rosa_laevigata	RLG00000027025
rosa_multiflora	Rmu_co8167220.1_g000001 Rmu_sc0002021.1_g000013 Rmu_sc0033719.1_g000001
rosa_roxburghii	Rroxscaffold_4G00286410
rosa_rugosa	Rorug01G0357600
rosa_samantha	Rh1AG367100 Rh1BG330600 Rh1DG362100
rosa_wichuraiana	Rw1G032310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	503
AccBSI	CCGCTC	1 cut(s)	6
AccI	GTMKAC	1 cut(s)	743
AccII	CGCG	3 cut(s)	233, 377, 436
AclWI	GGATC	1 cut(s)	752
AcoI	YGGCCR	7 cut(s)	85, 124, 201, 277, 336, 372, 447
AcyI	GRCGYC	3 cut(s)	210, 443, 500
AfaI	GTAC	2 cut(s)	83, 625
AfiI	CCNNNNNNNGG	4 cut(s)	264, 321, 403, 720
AflIII	ACRYGT	1 cut(s)	644
AgsI	TTSAA	3 cut(s)	382, 466, 553
AjiI	CACGTC	2 cut(s)	402, 645
AjnI	CCWGG	2 cut(s)	520, 678
AluBI	AGCT	5 cut(s)	70, 111, 166, 348, 705
AluI	AGCT	5 cut(s)	70, 111, 166, 348, 705
Alw21I	GWGCWC	2 cut(s)	350, 434
Alw26I	GTCTC	1 cut(s)	635
AlwI	GGATC	1 cut(s)	752
ApeKI	GCWGC	2 cut(s)	181, 664
AspLEI	GCGC	2 cut(s)	93, 235
AspS9I	GGNCC	6 cut(s)	99, 129, 252, 395, 711, 748
AsuC2I	CCSGG	5 cut(s)	123, 224, 265, 276, 413
AsuHPI	GGTGA	2 cut(s)	26, 697
AsuNHI	GCTAGC	1 cut(s)	724
AvaII	GGWCC	3 cut(s)	99, 129, 748
AxyI	CCTNAGG	1 cut(s)	45
BaeGI	GKGCMC	1 cut(s)	229
BanII	GRGCYC	1 cut(s)	350
Bbv12I	GWGCWC	2 cut(s)	350, 434
BbvI	GCAGC	2 cut(s)	193, 676
BccI	CCATC	3 cut(s)	266, 302, 628
BceAI	ACGGC	3 cut(s)	100, 175, 256
BciT130I	CCWGG	2 cut(s)	522, 680
BclI	TGATCA	3 cut(s)	63, 105, 586
BcnI	CCSGG	5 cut(s)	123, 224, 265, 276, 413
BcoDI	GTCTC	1 cut(s)	635
BfaI	CTAG	1 cut(s)	725
BfmI	CTRYAG	1 cut(s)	737
BglI	GCCNNNNNGGC	1 cut(s)	132
BisI	GCNGC	9 cut(s)	7, 182, 280, 326, 375, 425, 477, 518, 665
BlpI	GCTNAGC	1 cut(s)	167
BlsI	GCNGC	9 cut(s)	8, 183, 281, 327, 376, 426, 478, 519, 666
Bme1390I	CCNGG	7 cut(s)	123, 224, 265, 276, 413, 522, 680
Bme18I	GGWCC	3 cut(s)	99, 129, 748
BmgBI	CACGTC	2 cut(s)	402, 645
BmgT120I	GGNCC	6 cut(s)	99, 129, 252, 395, 711, 748
BmiI	GGNNCC	2 cut(s)	269, 397
BmrFI	CCNGG	7 cut(s)	123, 224, 265, 276, 413, 522, 680
BmsI	GCATC	2 cut(s)	126, 651
BmtI	GCTAGC	1 cut(s)	728
BplI	GAGNNNNNCTC	6 cut(s)	197, 229, 332, 364, 353, 385
Bpu10I	CCTNAGC	1 cut(s)	149
Bpu1102I	GCTNAGC	1 cut(s)	167
BpuMI	CCSGG	5 cut(s)	123, 224, 265, 276, 413
BsaBI	GATNNNNATC	1 cut(s)	588
BsaHI	GRCGYC	3 cut(s)	210, 443, 500
BsaJI	CCNNGG	7 cut(s)	121, 204, 238, 274, 450, 521, 678
BsaXI	ACNNNNNCTCC	6 cut(s)	219, 249, 296, 326, 629, 659
Bsc4I	CCNNNNNNNGG	4 cut(s)	264, 321, 403, 720
Bse118I	RCCGGY	3 cut(s)	87, 126, 199
Bse1I	ACTGG	2 cut(s)	101, 311
Bse21I	CCTNAGG	1 cut(s)	45
Bse8I	GATNNNNATC	1 cut(s)	588
BseBI	CCWGG	2 cut(s)	522, 680
BseDI	CCNNGG	7 cut(s)	121, 204, 238, 274, 450, 521, 678
BseGI	GGATG	3 cut(s)	117, 613, 675
BseJI	GATNNNNATC	1 cut(s)	588
BseLI	CCNNNNNNNGG	4 cut(s)	264, 321, 403, 720
BseMII	CTCAG	3 cut(s)	59, 163, 181
BseNI	ACTGG	2 cut(s)	101, 311
BseRI	GAGGAG	7 cut(s)	260, 467, 575, 587, 611, 629, 653
BseSI	GKGCMC	1 cut(s)	229
BseX3I	CGGCCG	6 cut(s)	85, 124, 201, 277, 372, 447
BseXI	GCAGC	2 cut(s)	193, 676
BsgI	GTGCAG	1 cut(s)	200
Bsh1236I	CGCG	3 cut(s)	233, 377, 436
Bsh1285I	CGRYCG	7 cut(s)	88, 127, 204, 219, 280, 375, 450
BsiEI	CGRYCG	7 cut(s)	88, 127, 204, 219, 280, 375, 450
BsiHKAI	GWGCWC	2 cut(s)	350, 434
BslI	CCNNNNNNNGG	4 cut(s)	264, 321, 403, 720
BsmAI	GTCTC	1 cut(s)	635
BsmBI	CGTCTC	1 cut(s)	635
Bsp1286I	GDGCHC	3 cut(s)	229, 350, 434
Bsp143I	GATC	5 cut(s)	63, 105, 216, 586, 757
Bsp1720I	GCTNAGC	1 cut(s)	167
BspCNI	CTCAG	3 cut(s)	58, 162, 180
BspFNI	CGCG	3 cut(s)	233, 377, 436
BspLI	GGNNCC	2 cut(s)	269, 397
BspOI	GCTAGC	1 cut(s)	728
BspPI	GGATC	1 cut(s)	752
BsrBI	CCGCTC	1 cut(s)	6
BsrFI	RCCGGY	3 cut(s)	87, 126, 199
BsrI	ACTGG	2 cut(s)	101, 311
BssAI	RCCGGY	3 cut(s)	87, 126, 199
BssECI	CCNNGG	7 cut(s)	121, 204, 238, 274, 450, 521, 678
BssMI	GATC	5 cut(s)	63, 105, 216, 586, 757
BssNI	GRCGYC	3 cut(s)	210, 443, 500
Bst2UI	CCWGG	2 cut(s)	522, 680
Bst4CI	ACNGT	3 cut(s)	628, 741, 748
Bst6I	CTCTTC	2 cut(s)	361, 548
BstACI	GRCGYC	3 cut(s)	210, 443, 500
BstC8I	GCNNGC	7 cut(s)	89, 201, 336, 350, 434, 494, 726
BstDEI	CTNAG	3 cut(s)	45, 149, 167
BstDSI	CCRYGG	1 cut(s)	238
BstF5I	GGATG	3 cut(s)	117, 613, 675
BstFNI	CGCG	3 cut(s)	233, 377, 436
BstHHI	GCGC	2 cut(s)	93, 235
BstKTI	GATC	5 cut(s)	66, 108, 219, 589, 760
BstMAI	GTCTC	1 cut(s)	635
BstMBI	GATC	5 cut(s)	63, 105, 216, 586, 757
BstMCI	CGRYCG	7 cut(s)	88, 127, 204, 219, 280, 375, 450
BstNI	CCWGG	2 cut(s)	522, 680
BstSCI	CCNGG	7 cut(s)	121, 222, 263, 274, 411, 520, 678
BstSFI	CTRYAG	1 cut(s)	737
BstSLI	GKGCMC	1 cut(s)	229
BstUI	CGCG	3 cut(s)	233, 377, 436
BstV1I	GCAGC	2 cut(s)	193, 676
BstZI	CGGCCG	6 cut(s)	85, 124, 201, 277, 372, 447
Bsu36I	CCTNAGG	1 cut(s)	45
BtgI	CCRYGG	1 cut(s)	238
BtgZI	GCGATG	1 cut(s)	244
BtrI	CACGTC	2 cut(s)	402, 645
BtsCI	GGATG	3 cut(s)	117, 613, 675
BtsI	GCAGTG	1 cut(s)	434
BtsIMutI	CAGTG	3 cut(s)	304, 434, 503
Cac8I	GCNNGC	7 cut(s)	89, 201, 336, 350, 434, 494, 726
CfoI	GCGC	2 cut(s)	93, 235
Cfr10I	RCCGGY	3 cut(s)	87, 126, 199
Cfr13I	GGNCC	6 cut(s)	99, 129, 252, 395, 711, 748
CpoI	CGGWCCG	1 cut(s)	129
CseI	GACGC	4 cut(s)	62, 218, 432, 517
Csp6I	GTAC	2 cut(s)	82, 624
CspI	CGGWCCG	1 cut(s)	129
CviQI	GTAC	2 cut(s)	82, 624
DdeI	CTNAG	3 cut(s)	45, 149, 167
DpnI	GATC	5 cut(s)	65, 107, 218, 588, 759
DpnII	GATC	5 cut(s)	63, 105, 216, 586, 757
EaeI	YGGCCR	7 cut(s)	85, 124, 201, 277, 336, 372, 447
EagI	CGGCCG	6 cut(s)	85, 124, 201, 277, 372, 447
Eam1104I	CTCTTC	2 cut(s)	361, 548
EarI	CTCTTC	2 cut(s)	361, 548
EciI	GGCGGA	2 cut(s)	92, 343
Ecl136II	GAGCTC	1 cut(s)	348
EclXI	CGGCCG	6 cut(s)	85, 124, 201, 277, 372, 447
Eco24I	GRGCYC	1 cut(s)	350
Eco47I	GGWCC	3 cut(s)	99, 129, 748
Eco52I	CGGCCG	6 cut(s)	85, 124, 201, 277, 372, 447
Eco53kI	GAGCTC	1 cut(s)	348
Eco81I	CCTNAGG	1 cut(s)	45
EcoICRI	GAGCTC	1 cut(s)	348
EcoRII	CCWGG	2 cut(s)	520, 678
EcoT38I	GRGCYC	1 cut(s)	350
Esp3I	CGTCTC	1 cut(s)	635
FauI	CCCGC	1 cut(s)	472
FbaI	TGATCA	3 cut(s)	63, 105, 586
FblI	GTMKAC	1 cut(s)	743
Fnu4HI	GCNGC	9 cut(s)	7, 182, 280, 326, 375, 425, 477, 518, 665
FokI	GGATG	3 cut(s)	104, 620, 682
FriOI	GRGCYC	1 cut(s)	350
Fsp4HI	GCNGC	9 cut(s)	7, 182, 280, 326, 375, 425, 477, 518, 665
FspBI	CTAG	1 cut(s)	725
GlaI	GCGC	2 cut(s)	92, 234
GluI	GCNGC	9 cut(s)	7, 182, 280, 326, 375, 425, 477, 518, 665
HgaI	GACGC	4 cut(s)	62, 218, 432, 517
HhaI	GCGC	2 cut(s)	93, 235
Hin1I	GRCGYC	3 cut(s)	210, 443, 500
Hin6I	GCGC	2 cut(s)	91, 233
HinP1I	GCGC	2 cut(s)	91, 233
HincII	GTYRAC	1 cut(s)	744
HindII	GTYRAC	1 cut(s)	744
HinfI	GANTC	3 cut(s)	40, 341, 362
HphI	GGTGA	2 cut(s)	26, 697
Hpy166II	GTNNAC	1 cut(s)	744
Hpy188I	TCNGA	4 cut(s)	361, 406, 651, 762
Hpy188III	TCNNGA	4 cut(s)	47, 298, 593, 700
Hpy8I	GTNNAC	1 cut(s)	744
Hpy99I	CGWCG	3 cut(s)	406, 448, 748
HpyAV	CCTTC	1 cut(s)	22
HpyCH4III	ACNGT	3 cut(s)	628, 741, 748
HpyCH4IV	ACGT	4 cut(s)	177, 401, 500, 644
HpyCH4V	TGCA	3 cut(s)	159, 181, 664
HpyF3I	CTNAG	3 cut(s)	45, 149, 167
HpySE526I	ACGT	4 cut(s)	177, 401, 500, 644
Hsp92I	GRCGYC	3 cut(s)	210, 443, 500
HspAI	GCGC	2 cut(s)	91, 233
KroI	GCCGGC	2 cut(s)	87, 199
KroNI	GCCGGC	2 cut(s)	89, 201
Ksp22I	TGATCA	3 cut(s)	63, 105, 586
Kzo9I	GATC	5 cut(s)	63, 105, 216, 586, 757
LmnI	GCTCC	4 cut(s)	116, 240, 273, 324
Lsp1109I	GCAGC	2 cut(s)	193, 676
LweI	GCATC	2 cut(s)	126, 651
MaeI	CTAG	1 cut(s)	725
MaeII	ACGT	4 cut(s)	177, 401, 500, 644
MaeIII	GTNAC	1 cut(s)	501
MalI	GATC	5 cut(s)	65, 107, 218, 588, 759
MbiI	CCGCTC	1 cut(s)	6
MboI	GATC	5 cut(s)	63, 105, 216, 586, 757
MboII	GAAGA	2 cut(s)	348, 565
MhlI	GDGCHC	3 cut(s)	229, 350, 434
MlyI	GAGTC	3 cut(s)	49, 350, 371
MmeI	TCCRAC	2 cut(s)	384, 390
MroNI	GCCGGC	2 cut(s)	87, 199
MspA1I	CMGCKG	1 cut(s)	667
MspR9I	CCNGG	7 cut(s)	123, 224, 265, 276, 413, 522, 680
MvaI	CCWGG	2 cut(s)	522, 680
MvnI	CGCG	3 cut(s)	233, 377, 436
NaeI	GCCGGC	2 cut(s)	89, 201
NciI	CCSGG	5 cut(s)	123, 224, 265, 276, 413
NdeII	GATC	5 cut(s)	63, 105, 216, 586, 757
NgoMIV	GCCGGC	2 cut(s)	87, 199
NheI	GCTAGC	1 cut(s)	724
NlaIV	GGNNCC	2 cut(s)	269, 397
NmeAIII	GCCGAG	5 cut(s)	229, 350, 364, 475, 739
NmuCI	GTSAC	1 cut(s)	501
PcsI	WCGNNNNNNNCGW	2 cut(s)	216, 440
PdiI	GCCGGC	2 cut(s)	89, 201
PflFI	GACNNNGTC	1 cut(s)	511
PkrI	GCNGC	9 cut(s)	8, 183, 281, 327, 376, 426, 478, 519, 666
Ple19I	CGATCG	1 cut(s)	219
PleI	GAGTC	3 cut(s)	48, 349, 370
PpsI	GAGTC	3 cut(s)	48, 349, 370
Psp124BI	GAGCTC	1 cut(s)	350
Psp6I	CCWGG	2 cut(s)	520, 678
PspGI	CCWGG	2 cut(s)	520, 678
PspN4I	GGNNCC	2 cut(s)	269, 397
PspPI	GGNCC	6 cut(s)	99, 129, 252, 395, 711, 748
PsyI	GACNNNGTC	1 cut(s)	511
PvuI	CGATCG	1 cut(s)	219
RsaI	GTAC	2 cut(s)	83, 625
RsaNI	GTAC	2 cut(s)	82, 624
Rsr2I	CGGWCCG	1 cut(s)	129
RsrII	CGGWCCG	1 cut(s)	129
SacI	GAGCTC	1 cut(s)	350
SalI	GTCGAC	1 cut(s)	742
SatI	GCNGC	9 cut(s)	7, 182, 280, 326, 375, 425, 477, 518, 665
Sau3AI	GATC	5 cut(s)	63, 105, 216, 586, 757
Sau96I	GGNCC	6 cut(s)	99, 129, 252, 395, 711, 748
SchI	GAGTC	3 cut(s)	49, 350, 371
ScrFI	CCNGG	7 cut(s)	123, 224, 265, 276, 413, 522, 680
SduI	GDGCHC	3 cut(s)	229, 350, 434
SfaNI	GCATC	2 cut(s)	126, 651
SfcI	CTRYAG	1 cut(s)	737
SinI	GGWCC	3 cut(s)	99, 129, 748
SspMI	CTAG	1 cut(s)	725
SstI	GAGCTC	1 cut(s)	350
StyD4I	CCNGG	7 cut(s)	121, 222, 263, 274, 411, 520, 678
TaaI	ACNGT	3 cut(s)	628, 741, 748
TaiI	ACGT	4 cut(s)	180, 404, 503, 647
TaqI	TCGA	4 cut(s)	215, 344, 699, 743
TauI	GCSGC	7 cut(s)	9, 282, 328, 377, 427, 479, 520
TscAI	CASTG	3 cut(s)	311, 434, 510
TseFI	GTSAC	1 cut(s)	501
TseI	GCWGC	2 cut(s)	181, 664
Tsp45I	GTSAC	1 cut(s)	501
TspDTI	ATGAA	1 cut(s)	434
TspRI	CASTG	3 cut(s)	311, 434, 510
Tth111I	GACNNNGTC	1 cut(s)	511
VpaK11BI	GGWCC	3 cut(s)	99, 129, 748
XmiI	GTMKAC	1 cut(s)	743
XspI	CTAG	1 cut(s)	725
ZraI	GACGTC	1 cut(s)	501

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.