Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0014803

Physical Location & Seq

Genomic Coordinates Forward (+)

26319187 .. 26319942

Gene Structure 756 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1155100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGGCGATGAAGGGAGCGGTGAGCGGTGAGGATCGCGTGAAGGGGTCGTGGAGCCCGCAGGAGGACGCCACCCTGATCAAACTGGTGGCCCAGCACGGCCCCCGCAACTGGTCCCTCATCAGCACTGGCATTCCCGGCCGCTCCGGCAAGTCCTGCCGCCTCCGTTGGTGCAATCAGCTCAGCCCCACCGTCCAGCACAAGCCCTTTTCGCCTCAGGACGACTCCGTTATTATCCAGGCTCATGCCCTCCACGGTAATAAGTGGGCCACCATCGCCCGCCTCCTCCCCGGCCGCACCGACAATGCCATCAAAAATCACTGGAACTCCACTCTGCGGCGGGGACGCCAACGCGCCGAGTTTTCTTCCACGTCGTCGGGTTCCGACTTGGCCGCCGCGGTCGGGGACGAGCCGGACATGAAGCGGCAGTGCCTGCGGGCGTCGCCGGAACATGAGAGTCTGAAAGCAAACGCGGGAGGGGAGGGAGTGATAGTTGAGACGTCGCTGACGCTGTCGCCGCCCGGTGAGAAGGCGGAAAACGAGGTCGTATTGAAAAGTGAGGAGGAAGAAGACGGTCACGAAGCGGTGGATAATAACGATGATGTGGAGAACTGTAGGGTGGAGACGGAGGAGACGAGTTTGCTGAAGATCATGCATCGGATGATAGCGCGGGAGGTCAGGAATTACATCGACAGCTTACGGGAGAATGGTGGGCCCACTTTTGGGCTGCAGTCTGCAGCACAACAAAACGACCCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0006952 GO:0006970 GO:0008150 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009737 GO:0009739 GO:0009751 GO:0009753 GO:0009889 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010646 GO:0010647 GO:0010928 GO:0010929 GO:0014070 GO:0019219 GO:0019222 GO:0023051 GO:0023056 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0033993 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0046677 GO:0046686 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048869 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0097305 GO:0098542 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1903506 GO:2000022 GO:2000031 GO:2000112 GO:2001023 GO:2001038 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04151 ko05166 map04151 map05166

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

252

Amino Acids

27.51

Weight (kDa)

5.79

Isoelectric Point (pI)

51.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	14 - 60	3.1e-18	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	17 - 74	1e-14	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	67 - 110	2e-16	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	69 - 122	4.9e-10	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014803)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g24730
malus_domestica	MD01G1155100.v1.1 MD07G1224200.v1.1
prunus_persica	Prupe.2G252700_v2.0.a1
pyrus_communis	pycom01g17250 pycom07g20280
rosa_chinensis	RchiOBHm_Chr1g0370581
rosa_laevigata	RLG00000027025
rosa_multiflora	Rmu_co8167220.1_g000001 Rmu_sc0002021.1_g000013 Rmu_sc0033719.1_g000001
rosa_roxburghii	Rroxscaffold_4G00286410
rosa_rugosa	Rorug01G0357600
rosa_samantha	Rh1AG367100 Rh1BG330600 Rh1DG362100
rosa_wichuraiana	Rw1G032310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	500
AccBSI	CCGCTC	3 cut(s)	17, 24, 141
AccII	CGCG	5 cut(s)	36, 351, 395, 470, 667
AclWI	GGATC	1 cut(s)	39
AcoI	YGGCCR	3 cut(s)	136, 289, 387
AcuI	CTGAAG	1 cut(s)	662
AcyI	GRCGYC	4 cut(s)	66, 343, 437, 497
AfiI	CCNNNNNNNGG	6 cut(s)	61, 108, 333, 399, 719, 720
AgsI	TTSAA	1 cut(s)	550
AjiI	CACGTC	1 cut(s)	369
AjnI	CCWGG	1 cut(s)	234
AluBI	AGCT	2 cut(s)	178, 693
AluI	AGCT	2 cut(s)	178, 693
Alw26I	GTCTC	3 cut(s)	488, 614, 623
AlwI	GGATC	1 cut(s)	39
AlwNI	CAGNNNCTG	1 cut(s)	430
AoxI	GGCC	7 cut(s)	87, 97, 136, 264, 289, 387, 710
ApaI	GGGCCC	1 cut(s)	714
ApeKI	GCWGC	2 cut(s)	724, 734
AspLEI	GCGC	2 cut(s)	353, 667
AspS9I	GGNCC	6 cut(s)	88, 98, 111, 264, 710, 711
AsuC2I	CCSGG	3 cut(s)	135, 288, 519
AsuHPI	GGTGA	3 cut(s)	31, 38, 533
AvaII	GGWCC	1 cut(s)	111
AxyI	CCTNAGG	1 cut(s)	213
BaeGI	GKGCMC	1 cut(s)	714
BanII	GRGCYC	2 cut(s)	56, 714
BbsI	GAAGAC	1 cut(s)	573
BbvI	GCAGC	2 cut(s)	711, 746
BccI	CCATC	2 cut(s)	278, 314
BceAI	ACGGC	1 cut(s)	112
BciT130I	CCWGG	1 cut(s)	236
BclI	TGATCA	1 cut(s)	75
BcnI	CCSGG	3 cut(s)	135, 288, 519
BcoDI	GTCTC	3 cut(s)	488, 614, 623
BfmI	CTRYAG	3 cut(s)	610, 725, 732
BglI	GCCNNNNNGGC	1 cut(s)	144
BlpI	GCTNAGC	1 cut(s)	179
Bme1390I	CCNGG	4 cut(s)	135, 236, 288, 519
Bme18I	GGWCC	1 cut(s)	111
BmgBI	CACGTC	1 cut(s)	369
BmgT120I	GGNCC	6 cut(s)	88, 98, 111, 264, 710, 711
BmiI	GGNNCC	5 cut(s)	53, 100, 113, 379, 712
BmrFI	CCNGG	4 cut(s)	135, 236, 288, 519
BmsI	GCATC	1 cut(s)	661
BpiI	GAAGAC	1 cut(s)	573
Bpu1102I	GCTNAGC	1 cut(s)	179
BpuMI	CCSGG	3 cut(s)	135, 288, 519
BsaHI	GRCGYC	4 cut(s)	66, 343, 437, 497
BsaJI	CCNNGG	3 cut(s)	250, 286, 393
BsaXI	ACNNNNNCTCC	4 cut(s)	308, 338, 474, 504
Bsc4I	CCNNNNNNNGG	6 cut(s)	61, 108, 333, 399, 719, 720
Bse1I	ACTGG	4 cut(s)	87, 113, 130, 323
Bse21I	CCTNAGG	1 cut(s)	213
BseBI	CCWGG	1 cut(s)	236
BseDI	CCNNGG	3 cut(s)	250, 286, 393
BseGI	GGATG	1 cut(s)	663
BseLI	CCNNNNNNNGG	6 cut(s)	61, 108, 333, 399, 719, 720
BseMII	CTCAG	2 cut(s)	193, 227
BseNI	ACTGG	4 cut(s)	87, 113, 130, 323
BseRI	GAGGAG	3 cut(s)	272, 572, 641
BseSI	GKGCMC	1 cut(s)	714
BseX3I	CGGCCG	2 cut(s)	136, 289
BseXI	GCAGC	2 cut(s)	711, 746
BseYI	CCCAGC	1 cut(s)	90
Bsh1236I	CGCG	5 cut(s)	36, 351, 395, 470, 667
Bsh1285I	CGRYCG	3 cut(s)	139, 292, 399
BshFI	GGCC	7 cut(s)	89, 99, 138, 266, 291, 389, 712
BsiEI	CGRYCG	3 cut(s)	139, 292, 399
BsiSI	CCGG	6 cut(s)	135, 144, 288, 410, 443, 519
BslFI	GGGAC	3 cut(s)	97, 354, 416
BslI	CCNNNNNNNGG	6 cut(s)	61, 108, 333, 399, 719, 720
BsmAI	GTCTC	3 cut(s)	488, 614, 623
BsmBI	CGTCTC	3 cut(s)	488, 614, 623
BsmFI	GGGAC	3 cut(s)	97, 354, 416
BsmI	GAATGC	1 cut(s)	129
BsnI	GGCC	7 cut(s)	89, 99, 138, 266, 291, 389, 712
Bsp120I	GGGCCC	1 cut(s)	710
Bsp1286I	GDGCHC	2 cut(s)	56, 714
Bsp143I	GATC	3 cut(s)	31, 75, 645
Bsp1720I	GCTNAGC	1 cut(s)	179
BspANI	GGCC	7 cut(s)	89, 99, 138, 266, 291, 389, 712
BspCNI	CTCAG	2 cut(s)	192, 226
BspFNI	CGCG	5 cut(s)	36, 351, 395, 470, 667
BspLI	GGNNCC	5 cut(s)	53, 100, 113, 379, 712
BspMAI	CTGCAG	2 cut(s)	729, 736
BspPI	GGATC	1 cut(s)	39
BsrBI	CCGCTC	3 cut(s)	17, 24, 141
BsrI	ACTGG	4 cut(s)	87, 113, 130, 323
BssECI	CCNNGG	3 cut(s)	250, 286, 393
BssMI	GATC	3 cut(s)	31, 75, 645
BssNI	GRCGYC	4 cut(s)	66, 343, 437, 497
Bst2UI	CCWGG	1 cut(s)	236
Bst4CI	ACNGT	4 cut(s)	190, 254, 572, 611
BstACI	GRCGYC	4 cut(s)	66, 343, 437, 497
BstAPI	GCANNNNNTGC	2 cut(s)	153, 430
BstC8I	GCNNGC	4 cut(s)	56, 277, 431, 435
BstDEI	CTNAG	2 cut(s)	179, 213
BstDSI	CCRYGG	2 cut(s)	250, 393
BstF5I	GGATG	1 cut(s)	663
BstFNI	CGCG	5 cut(s)	36, 351, 395, 470, 667
BstHHI	GCGC	2 cut(s)	353, 667
BstKTI	GATC	3 cut(s)	34, 78, 648
BstMAI	GTCTC	3 cut(s)	488, 614, 623
BstMBI	GATC	3 cut(s)	31, 75, 645
BstMCI	CGRYCG	3 cut(s)	139, 292, 399
BstMWI	GCNNNNNNNGC	8 cut(s)	135, 144, 153, 208, 272, 430, 439, 514
BstNI	CCWGG	1 cut(s)	236
BstSCI	CCNGG	4 cut(s)	133, 234, 286, 517
BstSFI	CTRYAG	3 cut(s)	610, 725, 732
BstSLI	GKGCMC	1 cut(s)	714
BstUI	CGCG	5 cut(s)	36, 351, 395, 470, 667
BstV1I	GCAGC	2 cut(s)	711, 746
BstV2I	GAAGAC	1 cut(s)	573
BstZI	CGGCCG	2 cut(s)	136, 289
Bsu36I	CCTNAGG	1 cut(s)	213
BsuRI	GGCC	7 cut(s)	89, 99, 138, 266, 291, 389, 712
BtgI	CCRYGG	2 cut(s)	250, 393
BtgZI	GCGATG	2 cut(s)	20, 256
BtrI	CACGTC	1 cut(s)	369
BtsCI	GGATG	1 cut(s)	663
BtsI	GCAGTG	1 cut(s)	431
BtsIMutI	CAGTG	3 cut(s)	123, 316, 431
Cac8I	GCNNGC	4 cut(s)	56, 277, 431, 435
CaiI	CAGNNNCTG	1 cut(s)	430
CfoI	GCGC	2 cut(s)	353, 667
Cfr13I	GGNCC	6 cut(s)	88, 98, 111, 264, 710, 711
Cfr42I	CCGCGG	1 cut(s)	396
CseI	GACGC	4 cut(s)	74, 351, 426, 514
CviAII	CATG	4 cut(s)	242, 415, 449, 649
DdeI	CTNAG	2 cut(s)	179, 213
DpnI	GATC	3 cut(s)	33, 77, 647
DpnII	GATC	3 cut(s)	31, 75, 645
EaeI	YGGCCR	3 cut(s)	136, 289, 387
EagI	CGGCCG	2 cut(s)	136, 289
EciI	GGCGGA	1 cut(s)	545
EclXI	CGGCCG	2 cut(s)	136, 289
Eco24I	GRGCYC	2 cut(s)	56, 714
Eco47I	GGWCC	1 cut(s)	111
Eco52I	CGGCCG	2 cut(s)	136, 289
Eco57I	CTGAAG	1 cut(s)	662
Eco81I	CCTNAGG	1 cut(s)	213
EcoRII	CCWGG	1 cut(s)	234
EcoT22I	ATGCAT	1 cut(s)	654
EcoT38I	GRGCYC	2 cut(s)	56, 714
Esp3I	CGTCTC	3 cut(s)	488, 614, 623
FaeI	CATG	4 cut(s)	245, 418, 452, 652
FaiI	YATR	4 cut(s)	243, 416, 450, 650
FaqI	GGGAC	3 cut(s)	97, 354, 416
FatI	CATG	4 cut(s)	241, 414, 448, 648
FauI	CCCGC	7 cut(s)	63, 110, 284, 330, 426, 463, 660
FbaI	TGATCA	1 cut(s)	75
FokI	GGATG	1 cut(s)	670
FriOI	GRGCYC	2 cut(s)	56, 714
GlaI	GCGC	2 cut(s)	352, 666
GsaI	CCCAGC	1 cut(s)	94
HaeIII	GGCC	7 cut(s)	89, 99, 138, 266, 291, 389, 712
HapII	CCGG	6 cut(s)	135, 144, 288, 410, 443, 519
HgaI	GACGC	4 cut(s)	74, 351, 426, 514
HhaI	GCGC	2 cut(s)	353, 667
Hin1I	GRCGYC	4 cut(s)	66, 343, 437, 497
Hin1II	CATG	4 cut(s)	245, 418, 452, 652
Hin6I	GCGC	2 cut(s)	351, 665
HinP1I	GCGC	2 cut(s)	351, 665
HinfI	GANTC	2 cut(s)	221, 454
HpaII	CCGG	6 cut(s)	135, 144, 288, 410, 443, 519
HphI	GGTGA	3 cut(s)	31, 38, 533
Hpy188I	TCNGA	3 cut(s)	382, 459, 657
Hpy188III	TCNNGA	3 cut(s)	215, 575, 676
Hpy99I	CGWCG	4 cut(s)	373, 376, 442, 502
HpyAV	CCTTC	3 cut(s)	4, 34, 520
HpyCH4III	ACNGT	4 cut(s)	190, 254, 572, 611
HpyCH4IV	ACGT	2 cut(s)	368, 497
HpyCH4V	TGCA	4 cut(s)	171, 652, 727, 734
HpyF10VI	GCNNNNNNNGC	8 cut(s)	135, 144, 153, 208, 272, 430, 439, 514
HpyF3I	CTNAG	2 cut(s)	179, 213
HpySE526I	ACGT	2 cut(s)	368, 497
Hsp92I	GRCGYC	4 cut(s)	66, 343, 437, 497
Hsp92II	CATG	4 cut(s)	245, 418, 452, 652
HspAI	GCGC	2 cut(s)	351, 665
Ksp22I	TGATCA	1 cut(s)	75
KspI	CCGCGG	1 cut(s)	396
Kzo9I	GATC	3 cut(s)	31, 75, 645
LmnI	GCTCC	3 cut(s)	14, 51, 146
Lsp1109I	GCAGC	2 cut(s)	711, 746
LweI	GCATC	1 cut(s)	661
MaeII	ACGT	2 cut(s)	368, 497
MaeIII	GTNAC	1 cut(s)	572
MalI	GATC	3 cut(s)	33, 77, 647
MbiI	CCGCTC	3 cut(s)	17, 24, 141
MboI	GATC	3 cut(s)	31, 75, 645
MboII	GAAGA	4 cut(s)	354, 575, 578, 655
MhlI	GDGCHC	2 cut(s)	56, 714
MluCI	AATT	1 cut(s)	679
MlyI	GAGTC	2 cut(s)	215, 463
MmeI	TCCRAC	1 cut(s)	405
Mph1103I	ATGCAT	1 cut(s)	654
MspA1I	CMGCKG	1 cut(s)	395
MspI	CCGG	6 cut(s)	135, 144, 288, 410, 443, 519
MspR9I	CCNGG	4 cut(s)	135, 236, 288, 519
Mva1269I	GAATGC	1 cut(s)	129
MvaI	CCWGG	1 cut(s)	236
MvnI	CGCG	5 cut(s)	36, 351, 395, 470, 667
MwoI	GCNNNNNNNGC	8 cut(s)	135, 144, 153, 208, 272, 430, 439, 514
NciI	CCSGG	3 cut(s)	135, 288, 519
NdeII	GATC	3 cut(s)	31, 75, 645
NlaIII	CATG	4 cut(s)	245, 418, 452, 652
NlaIV	GGNNCC	5 cut(s)	53, 100, 113, 379, 712
NmeAIII	GCCGAG	1 cut(s)	379
NmuCI	GTSAC	1 cut(s)	572
NsiI	ATGCAT	1 cut(s)	654
PcsI	WCGNNNNNNNCGW	1 cut(s)	629
PctI	GAATGC	1 cut(s)	129
PflFI	GACNNNGTC	1 cut(s)	508
PleI	GAGTC	2 cut(s)	215, 462
PpsI	GAGTC	2 cut(s)	215, 462
Psp6I	CCWGG	1 cut(s)	234
PspFI	CCCAGC	1 cut(s)	90
PspGI	CCWGG	1 cut(s)	234
PspN4I	GGNNCC	5 cut(s)	53, 100, 113, 379, 712
PspOMI	GGGCCC	1 cut(s)	710
PspPI	GGNCC	6 cut(s)	88, 98, 111, 264, 710, 711
PstI	CTGCAG	2 cut(s)	729, 736
PstNI	CAGNNNCTG	1 cut(s)	430
PsyI	GACNNNGTC	1 cut(s)	508
SacII	CCGCGG	1 cut(s)	396
Sau3AI	GATC	3 cut(s)	31, 75, 645
Sau96I	GGNCC	6 cut(s)	88, 98, 111, 264, 710, 711
SchI	GAGTC	2 cut(s)	215, 463
ScrFI	CCNGG	4 cut(s)	135, 236, 288, 519
SduI	GDGCHC	2 cut(s)	56, 714
SetI	ASST	6 cut(s)	180, 371, 500, 543, 675, 695
SfaNI	GCATC	1 cut(s)	661
SfcI	CTRYAG	3 cut(s)	610, 725, 732
Sfr303I	CCGCGG	1 cut(s)	396
SgrBI	CCGCGG	1 cut(s)	396
SinI	GGWCC	1 cut(s)	111
Sse9I	AATT	1 cut(s)	679
StyD4I	CCNGG	4 cut(s)	133, 234, 286, 517
TaaI	ACNGT	4 cut(s)	190, 254, 572, 611
TaiI	ACGT	2 cut(s)	371, 500
TaqI	TCGA	1 cut(s)	687
TasI	AATT	1 cut(s)	679
TauI	GCSGC	8 cut(s)	141, 159, 294, 337, 392, 395, 424, 517
TscAI	CASTG	3 cut(s)	130, 323, 431
TseFI	GTSAC	1 cut(s)	572
TseI	GCWGC	2 cut(s)	724, 734
Tsp45I	GTSAC	1 cut(s)	572
TspDTI	ATGAA	2 cut(s)	23, 431
TspGWI	ACGGA	3 cut(s)	152, 214, 638
TspRI	CASTG	3 cut(s)	130, 323, 431
Tth111I	GACNNNGTC	1 cut(s)	508
VpaK11BI	GGWCC	1 cut(s)	111
ZraI	GACGTC	1 cut(s)	498
Zsp2I	ATGCAT	1 cut(s)	654

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.